Wall clock time and date at job start Tue Mar 31 2020 02:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86809 * 119.99722 * 2 1 4 4 H 1.48508 * 109.46660 * 269.99551 * 3 2 1 5 5 H 1.48498 * 109.47382 * 29.99576 * 3 2 1 6 6 H 1.48492 * 109.47055 * 150.00161 * 3 2 1 7 7 C 1.38805 * 120.00436 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99550 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00212 * 179.97438 * 7 2 1 10 10 C 1.46505 * 119.99620 * 176.92883 * 9 7 2 11 11 C 1.52996 * 112.85057 * 64.44970 * 10 9 7 12 12 N 1.46508 * 109.47252 * 65.59346 * 11 10 9 13 13 C 1.34776 * 119.99687 * 182.63587 * 12 11 10 14 14 O 1.21276 * 120.00687 * 0.02562 * 13 12 11 15 15 C 1.50709 * 119.99515 * 180.02562 * 13 12 11 16 16 C 1.52999 * 119.80468 * 248.97656 * 15 13 12 17 17 C 1.54504 * 122.36465 * 176.59580 * 15 13 12 18 18 H 1.09000 * 122.36789 * 359.45468 * 17 15 13 19 19 C 1.54476 * 104.06417 * 223.21565 * 17 15 13 20 20 O 1.44426 * 104.80141 * 336.02369 * 19 17 15 21 21 C 1.44426 * 105.27725 * 40.50834 * 20 19 17 22 22 C 1.53773 * 113.61726 * 293.24980 * 10 9 7 23 23 C 1.54056 * 86.98913 * 270.84084 * 22 10 9 24 24 C 1.53780 * 87.07204 * 334.56875 * 23 22 10 25 25 H 0.97000 * 120.00015 * 0.02562 * 1 2 3 26 26 H 0.96991 * 120.00093 * 357.21326 * 9 7 2 27 27 H 1.08997 * 109.47460 * 185.59340 * 11 10 9 28 28 H 1.08997 * 109.47263 * 305.59582 * 11 10 9 29 29 H 0.96997 * 119.99638 * 2.62892 * 12 11 10 30 30 H 1.09000 * 117.43665 * 355.36426 * 16 15 13 31 31 H 1.08997 * 117.43321 * 140.01416 * 16 15 13 32 32 H 1.09003 * 110.37460 * 217.19070 * 19 17 15 33 33 H 1.08995 * 110.46632 * 94.90195 * 19 17 15 34 34 H 1.09002 * 110.37256 * 200.65579 * 21 20 19 35 35 H 1.09003 * 110.36916 * 78.32032 * 21 20 19 36 36 H 1.09001 * 113.61678 * 25.43631 * 22 10 9 37 37 H 1.08997 * 113.61584 * 156.33999 * 22 10 9 38 38 H 1.08992 * 113.62088 * 220.02046 * 23 22 10 39 39 H 1.09003 * 113.68713 * 89.11956 * 23 22 10 40 40 H 1.08998 * 113.61905 * 270.87610 * 24 23 22 41 41 H 1.09008 * 113.61345 * 139.97557 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4689 0.0686 11 6 3.8822 -3.3553 -1.1571 12 7 4.4455 -2.7048 -2.3429 13 6 4.3131 -3.2807 -3.5542 14 8 3.7274 -4.3371 -3.6628 15 6 4.8931 -2.6119 -4.7738 16 6 3.9604 -2.0228 -5.8340 17 6 4.8409 -3.2594 -6.1757 18 1 4.3898 -4.2360 -6.3509 19 6 6.2503 -3.0102 -6.7570 20 8 6.7451 -1.8563 -6.0431 21 6 6.3278 -2.0481 -4.6739 22 6 3.9391 -3.2091 1.4053 23 6 5.1590 -2.4150 1.9099 24 6 5.5954 -2.3035 0.4395 25 1 -0.4850 0.8400 -0.0004 26 1 3.8646 -0.3630 -0.0416 27 1 4.3690 -4.3186 -1.0054 28 1 2.8123 -3.5073 -1.2999 29 1 4.9135 -1.8597 -2.2561 30 1 2.8895 -2.1784 -5.7031 31 1 4.2448 -1.0693 -6.2791 32 1 6.1886 -2.7984 -7.8244 33 1 6.8939 -3.8716 -6.5784 34 1 6.3256 -1.0972 -4.1411 35 1 6.9823 -2.7625 -4.1743 36 1 3.0120 -2.9638 1.9233 37 1 4.1152 -4.2825 1.3360 38 1 5.8399 -3.0042 2.5240 39 1 4.9015 -1.4575 2.3626 40 1 6.2235 -3.1298 0.1066 41 1 6.0046 -1.3275 0.1783 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484634875.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:39 Heat of formation + Delta-G solvation = -8.855862 kcal Electronic energy + Delta-G solvation = -22668.717051 eV Core-core repulsion = 19357.977301 eV Total energy + Delta-G solvation = -3310.739750 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.81949 -39.31215 -38.19171 -34.41587 -34.00043 -33.32250 -30.63444 -29.29381 -27.45418 -25.93743 -25.38860 -23.91183 -22.78555 -21.44236 -20.85753 -19.50605 -18.34130 -17.72615 -17.54879 -16.20878 -15.66109 -15.51021 -15.35933 -14.91962 -14.64976 -14.29491 -14.11392 -13.77865 -13.09819 -12.97756 -12.88360 -12.73838 -12.37831 -12.06073 -11.90584 -11.63638 -11.51038 -11.30617 -10.95208 -10.64386 -10.48810 -10.34928 -10.23636 -10.19422 -9.77981 -9.71874 -9.62978 -9.49915 -8.95840 -8.62780 -7.38625 -5.83271 -3.21125 2.68473 3.25622 3.30257 3.31915 3.39618 3.47003 3.73086 4.32442 4.45120 4.51334 4.71154 4.78111 4.94021 5.03677 5.06321 5.16720 5.19273 5.29919 5.37885 5.39937 5.45832 5.51884 5.60283 5.62645 5.74209 5.90716 5.97536 6.00152 6.07285 6.17471 6.18446 6.44533 6.46319 6.61684 6.77085 6.81476 6.93056 7.84023 7.92238 8.35004 8.50453 9.11645 9.83380 10.01136 11.34554 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015827 B = 0.005555 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.717812 B = 5039.117268 C = 5742.365482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.881 3.119 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.092 0.908 9 N -0.725 5.725 10 C 0.179 3.821 11 C 0.121 3.879 12 N -0.700 5.700 13 C 0.557 3.443 14 O -0.546 6.546 15 C -0.210 4.210 16 C -0.101 4.101 17 C -0.169 4.169 18 H 0.133 0.867 19 C 0.071 3.929 20 O -0.370 6.370 21 C 0.084 3.916 22 C -0.148 4.148 23 C -0.130 4.130 24 C -0.147 4.147 25 H 0.260 0.740 26 H 0.363 0.637 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.398 0.602 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.809 -4.857 -7.732 17.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.187 4.187 3 Si 0.711 3.289 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.109 0.891 9 N -0.367 5.367 10 C 0.086 3.914 11 C -0.005 4.005 12 N -0.348 5.348 13 C 0.342 3.658 14 O -0.425 6.425 15 C -0.213 4.213 16 C -0.138 4.138 17 C -0.188 4.188 18 H 0.151 0.849 19 C -0.006 4.006 20 O -0.288 6.288 21 C 0.007 3.993 22 C -0.188 4.188 23 C -0.168 4.168 24 C -0.185 4.185 25 H 0.070 0.930 26 H 0.197 0.803 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.232 0.768 30 H 0.131 0.869 31 H 0.125 0.875 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.256 -5.481 -7.846 17.171 hybrid contribution 0.483 1.468 0.270 1.569 sum 14.738 -4.013 -7.577 17.051 Atomic orbital electron populations 1.69694 1.05102 1.25845 1.57029 1.24646 0.95150 0.97050 1.01848 0.86621 0.79267 0.85279 0.77738 1.21110 1.21761 1.20307 1.18925 0.80154 0.94709 1.43271 0.89058 1.42415 1.03955 1.00898 1.89397 1.20737 0.90870 0.88122 0.91671 1.21861 0.99643 0.94676 0.84304 1.45677 1.57101 1.25448 1.06589 1.18932 0.79456 0.84431 0.83014 1.90680 1.43160 1.22744 1.85872 1.23192 0.99072 1.07649 0.91416 1.23307 0.97088 0.96927 0.96525 1.24567 0.98492 1.00025 0.95698 0.84928 1.22983 0.91001 0.89147 0.97460 1.89160 1.77265 1.42484 1.19915 1.22825 0.90107 1.01655 0.84727 1.23330 0.99234 0.97903 0.98323 1.22699 0.97785 1.00826 0.95471 1.23199 0.96347 1.01446 0.97494 0.92992 0.80311 0.92469 0.90705 0.76797 0.86939 0.87495 0.88322 0.91131 0.88175 0.91023 0.90152 0.91024 0.92443 0.90204 0.90050 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.45 13.97 55.49 0.78 -27.68 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 3 Si 0.88 21.12 27.71 -169.99 -4.71 16.41 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.17 6.56 56.52 0.37 -5.80 16 7 C -0.24 -6.36 9.61 -15.06 -0.14 -6.50 16 8 H 0.09 2.65 7.82 -52.49 -0.41 2.24 16 9 N -0.72 -15.45 4.99 -46.48 -0.23 -15.68 16 10 C 0.18 3.09 0.79 -131.01 -0.10 2.99 16 11 C 0.12 2.12 5.02 -4.04 -0.02 2.10 16 12 N -0.70 -11.21 5.40 -60.29 -0.33 -11.54 16 13 C 0.56 9.29 7.51 -10.98 -0.08 9.21 16 14 O -0.55 -11.03 16.85 5.56 0.09 -10.93 16 15 C -0.21 -2.79 2.81 -154.09 -0.43 -3.23 16 16 C -0.10 -1.26 9.84 -25.35 -0.25 -1.51 16 17 C -0.17 -1.96 7.04 -87.67 -0.62 -2.58 16 18 H 0.13 1.56 8.14 -51.93 -0.42 1.14 16 19 C 0.07 0.69 7.54 37.93 0.29 0.98 16 20 O -0.37 -4.37 11.32 -35.23 -0.40 -4.77 16 21 C 0.08 0.94 6.97 37.93 0.26 1.21 16 22 C -0.15 -2.43 7.30 -25.78 -0.19 -2.61 16 23 C -0.13 -1.88 8.00 -25.77 -0.21 -2.09 16 24 C -0.15 -2.03 7.11 -25.92 -0.18 -2.22 16 25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.36 7.63 5.74 -40.82 -0.23 7.40 16 27 H 0.06 0.93 8.07 -51.93 -0.42 0.51 16 28 H 0.07 1.59 7.64 -51.93 -0.40 1.19 16 29 H 0.40 5.73 8.10 -40.82 -0.33 5.40 16 30 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.11 1.21 8.07 -51.93 -0.42 0.79 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.53 7.89 -51.93 -0.41 1.12 16 37 H 0.07 1.03 8.05 -51.93 -0.42 0.62 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 41 H 0.06 0.84 8.09 -51.92 -0.42 0.42 16 LS Contribution 337.06 15.07 5.08 5.08 Total: -1.00 -31.97 337.06 -7.92 -39.89 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -6.43 Total: 13.32 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -1.77 Total: -4.10 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.22 Total: -54.89 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.31 Total: -15.71 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.71 Total: 16.41 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.97 -7.92 -39.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484634875.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.035 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds