Wall clock time and date at job start Tue Mar 31 2020 02:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86809 * 119.99722 * 2 1 4 4 H 1.48508 * 109.46660 * 269.99551 * 3 2 1 5 5 H 1.48498 * 109.47382 * 29.99576 * 3 2 1 6 6 H 1.48492 * 109.47055 * 150.00161 * 3 2 1 7 7 C 1.38805 * 120.00436 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99550 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00212 * 179.97438 * 7 2 1 10 10 C 1.46505 * 119.99620 * 176.92883 * 9 7 2 11 11 C 1.52996 * 112.85057 * 64.44970 * 10 9 7 12 12 N 1.46508 * 109.47252 * 65.59346 * 11 10 9 13 13 C 1.34776 * 119.99687 * 182.63587 * 12 11 10 14 14 O 1.21276 * 120.00687 * 0.02562 * 13 12 11 15 15 C 1.50709 * 119.99515 * 180.02562 * 13 12 11 16 16 C 1.52999 * 119.80468 * 248.97656 * 15 13 12 17 17 C 1.54504 * 122.36465 * 176.59580 * 15 13 12 18 18 H 1.09000 * 122.36789 * 359.45468 * 17 15 13 19 19 C 1.54476 * 104.06417 * 223.21565 * 17 15 13 20 20 O 1.44426 * 104.80141 * 336.02369 * 19 17 15 21 21 C 1.44426 * 105.27725 * 40.50834 * 20 19 17 22 22 C 1.53773 * 113.61726 * 293.24980 * 10 9 7 23 23 C 1.54056 * 86.98913 * 270.84084 * 22 10 9 24 24 C 1.53780 * 87.07204 * 334.56875 * 23 22 10 25 25 H 0.97000 * 120.00015 * 0.02562 * 1 2 3 26 26 H 0.96991 * 120.00093 * 357.21326 * 9 7 2 27 27 H 1.08997 * 109.47460 * 185.59340 * 11 10 9 28 28 H 1.08997 * 109.47263 * 305.59582 * 11 10 9 29 29 H 0.96997 * 119.99638 * 2.62892 * 12 11 10 30 30 H 1.09000 * 117.43665 * 355.36426 * 16 15 13 31 31 H 1.08997 * 117.43321 * 140.01416 * 16 15 13 32 32 H 1.09003 * 110.37460 * 217.19070 * 19 17 15 33 33 H 1.08995 * 110.46632 * 94.90195 * 19 17 15 34 34 H 1.09002 * 110.37256 * 200.65579 * 21 20 19 35 35 H 1.09003 * 110.36916 * 78.32032 * 21 20 19 36 36 H 1.09001 * 113.61678 * 25.43631 * 22 10 9 37 37 H 1.08997 * 113.61584 * 156.33999 * 22 10 9 38 38 H 1.08992 * 113.62088 * 220.02046 * 23 22 10 39 39 H 1.09003 * 113.68713 * 89.11956 * 23 22 10 40 40 H 1.08998 * 113.61905 * 270.87610 * 24 23 22 41 41 H 1.09008 * 113.61345 * 139.97557 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4689 0.0686 11 6 3.8822 -3.3553 -1.1571 12 7 4.4455 -2.7048 -2.3429 13 6 4.3131 -3.2807 -3.5542 14 8 3.7274 -4.3371 -3.6628 15 6 4.8931 -2.6119 -4.7738 16 6 3.9604 -2.0228 -5.8340 17 6 4.8409 -3.2594 -6.1757 18 1 4.3898 -4.2360 -6.3509 19 6 6.2503 -3.0102 -6.7570 20 8 6.7451 -1.8563 -6.0431 21 6 6.3278 -2.0481 -4.6739 22 6 3.9391 -3.2091 1.4053 23 6 5.1590 -2.4150 1.9099 24 6 5.5954 -2.3035 0.4395 25 1 -0.4850 0.8400 -0.0004 26 1 3.8646 -0.3630 -0.0416 27 1 4.3690 -4.3186 -1.0054 28 1 2.8123 -3.5073 -1.2999 29 1 4.9135 -1.8597 -2.2561 30 1 2.8895 -2.1784 -5.7031 31 1 4.2448 -1.0693 -6.2791 32 1 6.1886 -2.7984 -7.8244 33 1 6.8939 -3.8716 -6.5784 34 1 6.3256 -1.0972 -4.1411 35 1 6.9823 -2.7625 -4.1743 36 1 3.0120 -2.9638 1.9233 37 1 4.1152 -4.2825 1.3360 38 1 5.8399 -3.0042 2.5240 39 1 4.9015 -1.4575 2.3626 40 1 6.2235 -3.1298 0.1066 41 1 6.0046 -1.3275 0.1783 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484634875.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:38 Heat of formation + Delta-G solvation = -32.424169 kcal Electronic energy + Delta-G solvation = -22669.739050 eV Core-core repulsion = 19357.977301 eV Total energy + Delta-G solvation = -3311.761749 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.86268 -40.61825 -39.48802 -35.48374 -35.29576 -35.24237 -32.58219 -30.30228 -28.72951 -26.83698 -26.70259 -25.64692 -24.15278 -22.76351 -21.77039 -20.75337 -19.93369 -19.53314 -18.68902 -17.26342 -16.84507 -16.73295 -16.47636 -16.21340 -16.15671 -15.81059 -15.43819 -14.95341 -14.75345 -14.54124 -14.05523 -13.86215 -13.74724 -13.24445 -13.14052 -13.04170 -12.98658 -12.64122 -12.51635 -12.12763 -11.81759 -11.71339 -11.60847 -11.54998 -11.24088 -11.03812 -10.89571 -10.76226 -10.64330 -10.05585 -9.31777 -8.00159 -5.34999 1.37282 1.41573 1.42710 1.48943 2.07396 2.42440 2.49218 2.83310 3.28732 3.39068 3.43269 3.51621 3.68188 3.75130 3.82627 3.94738 4.00763 4.10410 4.16807 4.42778 4.56128 4.62270 4.63670 4.69515 4.70735 4.74645 4.80075 4.85070 4.90311 4.98121 5.03194 5.11885 5.29113 5.37385 5.47101 5.62965 5.63842 5.83220 6.23278 6.54584 7.09601 7.19738 7.83226 8.02726 9.21635 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015827 B = 0.005555 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.717812 B = 5039.117268 C = 5742.365482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.988 5.988 2 C -0.066 4.066 3 Si 0.954 3.046 4 H -0.279 1.279 5 H -0.304 1.304 6 H -0.244 1.244 7 C -0.213 4.213 8 H 0.048 0.952 9 N -0.723 5.723 10 C 0.160 3.840 11 C 0.130 3.870 12 N -0.693 5.693 13 C 0.552 3.448 14 O -0.589 6.589 15 C -0.223 4.223 16 C -0.107 4.107 17 C -0.158 4.158 18 H 0.127 0.873 19 C 0.073 3.927 20 O -0.380 6.380 21 C 0.090 3.910 22 C -0.153 4.153 23 C -0.122 4.122 24 C -0.124 4.124 25 H 0.255 0.745 26 H 0.370 0.630 27 H 0.075 0.925 28 H 0.024 0.976 29 H 0.409 0.591 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.110 0.890 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.024 -4.209 -8.218 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.257 4.257 3 Si 0.781 3.219 4 H -0.205 1.205 5 H -0.231 1.231 6 H -0.168 1.168 7 C -0.344 4.344 8 H 0.066 0.934 9 N -0.365 5.365 10 C 0.069 3.931 11 C 0.004 3.996 12 N -0.341 5.341 13 C 0.339 3.661 14 O -0.471 6.471 15 C -0.227 4.227 16 C -0.144 4.144 17 C -0.176 4.176 18 H 0.145 0.855 19 C -0.003 4.003 20 O -0.298 6.298 21 C 0.013 3.987 22 C -0.193 4.193 23 C -0.159 4.159 24 C -0.162 4.162 25 H 0.064 0.936 26 H 0.204 0.796 27 H 0.093 0.907 28 H 0.042 0.958 29 H 0.245 0.755 30 H 0.113 0.887 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.104 0.896 34 H 0.130 0.870 35 H 0.102 0.898 36 H 0.060 0.940 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.129 0.871 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 18.555 -4.845 -8.326 20.906 hybrid contribution -0.898 1.079 0.407 1.461 sum 17.656 -3.766 -7.919 19.714 Atomic orbital electron populations 1.69905 1.07413 1.26473 1.60046 1.25486 0.95973 1.01259 1.02933 0.85429 0.78884 0.79535 0.78009 1.20505 1.23127 1.16766 1.18751 0.82476 0.92833 1.40380 0.93412 1.42287 1.02063 1.02903 1.89282 1.21087 0.93779 0.86563 0.91640 1.21658 0.96880 0.95907 0.85161 1.45625 1.56665 1.25709 1.06131 1.19532 0.78652 0.83931 0.83960 1.90654 1.45066 1.24791 1.86557 1.23195 1.00410 1.08707 0.90355 1.23318 0.96272 0.98221 0.96580 1.24695 0.99325 0.99286 0.94342 0.85490 1.23152 0.89443 0.89297 0.98364 1.89156 1.77232 1.43316 1.20124 1.22874 0.88362 1.02499 0.84943 1.23387 0.98880 0.99618 0.97434 1.22647 0.96771 1.00037 0.96444 1.23154 0.93264 1.03521 0.96212 0.93604 0.79583 0.90730 0.95778 0.75501 0.88726 0.86000 0.86106 0.89558 0.86958 0.89785 0.93974 0.88841 0.89359 0.91630 0.87144 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.29 13.97 21.65 0.30 -62.99 16 2 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 3 Si 0.95 43.76 27.71 68.60 1.90 45.67 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 6 H -0.24 -9.71 6.56 99.48 0.65 -9.05 16 7 C -0.21 -11.64 9.61 84.03 0.81 -10.83 16 8 H 0.05 2.98 7.82 -2.91 -0.02 2.96 16 9 N -0.72 -30.34 4.99 -300.98 -1.50 -31.84 16 10 C 0.16 5.34 0.79 4.12 0.00 5.34 16 11 C 0.13 4.56 5.02 86.38 0.43 4.99 16 12 N -0.69 -21.51 5.40 -463.05 -2.50 -24.01 16 13 C 0.55 18.26 7.51 87.66 0.66 18.92 16 14 O -0.59 -24.32 16.85 -3.02 -0.05 -24.37 16 15 C -0.22 -5.62 2.81 -51.91 -0.15 -5.77 16 16 C -0.11 -2.57 9.84 31.49 0.31 -2.26 16 17 C -0.16 -3.42 7.04 -8.88 -0.06 -3.48 16 18 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 19 C 0.07 1.20 7.54 72.48 0.55 1.75 16 20 O -0.38 -7.69 11.32 -148.98 -1.69 -9.38 16 21 C 0.09 1.75 6.97 72.48 0.51 2.25 16 22 C -0.15 -4.88 7.30 31.21 0.23 -4.65 16 23 C -0.12 -3.09 8.00 31.21 0.25 -2.84 16 24 C -0.12 -2.89 7.11 31.12 0.22 -2.67 16 25 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 26 H 0.37 14.62 5.74 -92.71 -0.53 14.08 16 27 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 28 H 0.02 1.08 7.64 -2.39 -0.02 1.06 16 29 H 0.41 10.84 8.10 -92.71 -0.75 10.09 16 30 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.12 2.55 8.07 -2.39 -0.02 2.53 16 32 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.04 1.65 7.89 -2.39 -0.02 1.63 16 37 H 0.09 2.54 8.05 -2.39 -0.02 2.52 16 38 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.11 2.04 8.10 -2.39 -0.02 2.02 16 41 H 0.08 1.67 8.09 -2.38 -0.02 1.65 16 Total: -1.00 -73.81 337.06 0.39 -73.43 By element: Atomic # 1 Polarization: 36.36 SS G_CDS: -0.30 Total: 36.07 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 4.22 Total: -2.57 kcal Atomic # 7 Polarization: -115.14 SS G_CDS: -3.70 Total: -118.84 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -1.74 Total: -33.74 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.90 Total: 45.67 kcal Total: -73.81 0.39 -73.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484634875.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.001 kcal (2) G-P(sol) polarization free energy of solvation -73.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds