Wall clock time and date at job start Tue Mar 31 2020 02:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99801 * 2 1 4 4 H 1.48498 * 109.47097 * 270.00156 * 3 2 1 5 5 H 1.48500 * 109.47061 * 30.00455 * 3 2 1 6 6 H 1.48501 * 109.46949 * 150.00155 * 3 2 1 7 7 C 1.38811 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00001 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99927 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99949 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47028 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46937 * 179.97438 * 11 10 9 13 13 O 1.42902 * 109.46914 * 180.02562 * 12 11 10 14 14 C 1.42894 * 114.00080 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47496 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47023 * 65.00079 * 15 14 13 17 17 C 1.34777 * 120.00195 * 179.97438 * 16 15 14 18 18 O 1.21613 * 119.99966 * 0.02562 * 17 16 15 19 19 C 1.43207 * 119.99984 * 180.27897 * 17 16 15 20 20 C 9.59581 * 121.11049 * 206.81448 * 9 1 2 21 21 C 9.89432 * 107.78316 * 211.81357 * 10 1 2 22 22 C 1.52996 * 117.49849 * 67.80466 * 21 20 19 23 23 C 1.52999 * 117.50110 * 359.14272 * 21 20 19 24 24 H 0.97003 * 120.00128 * 359.97438 * 1 2 3 25 25 H 0.96999 * 119.99531 * 359.97438 * 9 7 2 26 26 H 1.08999 * 109.47876 * 59.99617 * 10 9 7 27 27 H 1.09003 * 109.47214 * 299.99187 * 10 9 7 28 28 H 1.08999 * 109.47012 * 59.99786 * 11 10 9 29 29 H 1.08996 * 109.46779 * 299.99414 * 11 10 9 30 30 H 1.08995 * 109.47677 * 59.99401 * 12 11 10 31 31 H 1.09010 * 109.46937 * 299.99454 * 12 11 10 32 32 H 1.09002 * 109.47063 * 59.99956 * 14 13 12 33 33 H 1.08999 * 109.47467 * 300.00417 * 14 13 12 34 34 H 1.08998 * 109.47328 * 305.00414 * 15 14 13 35 35 H 1.08997 * 109.47540 * 185.00160 * 15 14 13 36 36 H 0.97000 * 120.00069 * 0.02562 * 16 15 14 37 37 H 1.09006 * 115.54513 * 213.47418 * 21 20 19 38 38 H 1.08998 * 117.49944 * 0.02562 * 22 21 20 39 39 H 1.09008 * 117.49634 * 145.01839 * 22 21 20 40 40 H 1.08994 * 117.49923 * 214.98032 * 23 21 20 41 41 H 1.09000 * 117.49171 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 6 1.0638 -4.8197 -0.0022 12 6 1.8289 -6.1447 -0.0029 13 8 0.9003 -7.2309 -0.0041 14 6 1.5148 -8.5209 -0.0054 15 6 0.4319 -9.6018 -0.0059 16 7 -0.3264 -9.5325 -1.2575 17 6 -1.3376 -10.3951 -1.4813 18 8 -1.6207 -11.2306 -0.6442 19 6 -2.0750 -10.3312 -2.7073 20 6 -2.6790 -10.2791 -3.7130 21 6 -3.4368 -10.2148 -4.9711 22 6 -2.6860 -9.7640 -6.2257 23 6 -3.7035 -8.8303 -5.5652 24 1 -0.4850 0.8401 0.0004 25 1 0.3556 -2.3880 -0.0016 26 1 2.6841 -3.7149 0.8888 27 1 2.6853 -3.7141 -0.8912 28 1 0.4375 -4.7617 -0.8924 29 1 0.4369 -4.7622 0.8875 30 1 2.4556 -6.2029 0.8870 31 1 2.4555 -6.2020 -0.8930 32 1 2.1349 -8.6289 0.8846 33 1 2.1351 -8.6271 -0.8953 34 1 -0.2414 -9.4419 0.8362 35 1 0.8979 -10.5831 0.0827 36 1 -0.1004 -8.8664 -1.9253 37 1 -4.2111 -10.9724 -5.0928 38 1 -1.6302 -9.5156 -6.1184 39 1 -2.9667 -10.2247 -7.1729 40 1 -4.6529 -8.6771 -6.0781 41 1 -3.3174 -7.9672 -5.0229 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506993351.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:48 Heat of formation + Delta-G solvation = -2.760073 kcal Electronic energy + Delta-G solvation = -19918.542780 eV Core-core repulsion = 16608.067363 eV Total energy + Delta-G solvation = -3310.475417 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.92536 -38.23394 -38.00332 -35.49496 -34.76531 -33.09666 -32.32756 -30.28707 -29.09071 -25.45180 -24.94152 -23.06682 -22.90190 -22.54717 -21.82393 -20.86807 -19.13408 -17.09578 -16.96861 -16.94486 -16.76327 -15.88750 -15.45547 -15.39903 -14.79961 -14.53915 -14.25870 -13.73614 -13.37552 -13.06236 -13.04457 -13.01867 -12.36754 -12.24213 -12.01715 -11.82236 -11.66913 -11.34320 -10.93356 -10.78874 -10.73161 -10.69736 -10.59253 -10.43053 -10.12893 -10.06975 -9.72573 -9.67723 -9.40930 -8.88789 -6.94181 -5.77285 -3.06712 1.20711 1.95056 2.78688 2.99362 3.42969 3.45333 3.49177 3.50502 3.65877 3.77574 4.28924 4.46655 4.52854 4.59377 4.66360 4.84826 5.05645 5.09481 5.14552 5.22962 5.25093 5.35542 5.36674 5.52562 5.55606 5.56136 5.59372 5.60489 5.92746 6.03232 6.05925 6.23979 6.33849 6.79363 6.83882 6.90253 7.12026 7.13460 7.68428 7.83215 8.41420 9.52351 10.10082 10.44749 11.45645 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014173 B = 0.002492 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.099894 B =11232.161864 C =12808.164564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.157 3.843 11 C -0.125 4.125 12 C 0.068 3.932 13 O -0.387 6.387 14 C 0.048 3.952 15 C 0.123 3.877 16 N -0.710 5.710 17 C 0.636 3.364 18 O -0.528 6.528 19 C -0.220 4.220 20 C -0.049 4.049 21 C -0.070 4.070 22 C -0.159 4.159 23 C -0.157 4.157 24 H 0.256 0.744 25 H 0.385 0.615 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.409 0.591 37 H 0.135 0.865 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.803 -23.049 -9.400 24.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.029 3.971 11 C -0.163 4.163 12 C -0.009 4.009 13 O -0.307 6.307 14 C -0.029 4.029 15 C 0.000 4.000 16 N -0.362 5.362 17 C 0.422 3.578 18 O -0.405 6.405 19 C -0.223 4.223 20 C -0.051 4.051 21 C -0.088 4.088 22 C -0.195 4.195 23 C -0.194 4.194 24 H 0.065 0.935 25 H 0.218 0.782 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.244 0.756 37 H 0.153 0.847 38 H 0.120 0.880 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.028 -23.481 -8.743 25.138 hybrid contribution 0.528 1.201 -0.257 1.337 sum -1.501 -22.280 -9.001 24.076 Atomic orbital electron populations 1.69666 1.05141 1.25716 1.57629 1.24768 0.95558 0.97773 1.02956 0.86164 0.78628 0.83718 0.77525 1.21680 1.21713 1.20741 1.19233 0.91047 0.84117 1.42868 0.91136 1.42341 1.05970 0.99917 1.89539 1.20510 0.93288 0.85464 0.97837 1.21674 0.99433 0.91810 1.03359 1.22517 0.91799 0.86423 1.00128 1.87933 1.33962 1.13312 1.95475 1.22718 0.94877 0.83778 1.01570 1.21491 0.93763 0.98030 0.86709 1.45753 1.33567 1.35600 1.21247 1.14606 0.79171 0.81237 0.82757 1.90860 1.67509 1.36811 1.45368 1.20561 1.02076 1.04342 0.95312 1.21316 0.94685 0.96273 0.92825 1.18908 1.01540 1.01213 0.87115 1.23124 0.98726 1.02659 0.95036 1.23153 1.01481 0.92399 1.02384 0.93453 0.78175 0.96315 0.96345 0.91218 0.91115 0.93140 0.93267 0.91278 0.92561 0.89955 0.89565 0.75571 0.84729 0.87995 0.87324 0.87226 0.87751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.57 13.06 55.49 0.72 -27.85 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -19.02 5.60 -59.91 -0.34 -19.36 16 10 C 0.16 3.15 6.26 -4.04 -0.03 3.13 16 11 C -0.12 -2.06 5.70 -26.73 -0.15 -2.21 16 12 C 0.07 0.87 5.94 37.16 0.22 1.09 16 13 O -0.39 -4.81 10.29 -35.23 -0.36 -5.17 16 14 C 0.05 0.41 6.07 37.16 0.23 0.64 16 15 C 0.12 1.14 6.06 -4.04 -0.02 1.11 16 16 N -0.71 -7.27 5.49 -62.77 -0.34 -7.62 16 17 C 0.64 8.11 7.65 -14.33 -0.11 8.00 16 18 O -0.53 -8.43 17.09 5.27 0.09 -8.34 16 19 C -0.22 -2.60 13.62 -38.83 -0.53 -3.13 16 20 C -0.05 -0.49 13.46 -37.20 -0.50 -0.99 16 21 C -0.07 -0.47 6.21 -93.49 -0.58 -1.05 16 22 C -0.16 -0.83 10.21 -26.69 -0.27 -1.10 16 23 C -0.16 -0.90 10.21 -26.69 -0.27 -1.17 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.38 10.49 7.67 -40.82 -0.31 10.17 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.41 3.63 8.44 -40.82 -0.34 3.29 16 37 H 0.14 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.11 0.37 8.14 -51.92 -0.42 -0.05 16 40 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 363.65 15.07 5.48 5.48 Total: -1.00 -34.53 363.65 -8.58 -43.11 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.54 Total: 5.49 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -2.27 Total: -3.21 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.04 Total: -54.82 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.27 Total: -13.51 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.53 -8.58 -43.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506993351.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.355 kcal (2) G-P(sol) polarization free energy of solvation -34.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds