Wall clock time and date at job start Tue Mar 31 2020 02:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99801 * 2 1 4 4 H 1.48498 * 109.47097 * 270.00156 * 3 2 1 5 5 H 1.48500 * 109.47061 * 30.00455 * 3 2 1 6 6 H 1.48501 * 109.46949 * 150.00155 * 3 2 1 7 7 C 1.38811 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00001 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99927 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99949 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47028 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46937 * 179.97438 * 11 10 9 13 13 O 1.42902 * 109.46914 * 180.02562 * 12 11 10 14 14 C 1.42894 * 114.00080 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47496 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47023 * 65.00079 * 15 14 13 17 17 C 1.34777 * 120.00195 * 179.97438 * 16 15 14 18 18 O 1.21613 * 119.99966 * 0.02562 * 17 16 15 19 19 C 1.43207 * 119.99984 * 180.27897 * 17 16 15 20 20 C 9.59581 * 121.11049 * 206.81448 * 9 1 2 21 21 C 9.89432 * 107.78316 * 211.81357 * 10 1 2 22 22 C 1.52996 * 117.49849 * 67.80466 * 21 20 19 23 23 C 1.52999 * 117.50110 * 359.14272 * 21 20 19 24 24 H 0.97003 * 120.00128 * 359.97438 * 1 2 3 25 25 H 0.96999 * 119.99531 * 359.97438 * 9 7 2 26 26 H 1.08999 * 109.47876 * 59.99617 * 10 9 7 27 27 H 1.09003 * 109.47214 * 299.99187 * 10 9 7 28 28 H 1.08999 * 109.47012 * 59.99786 * 11 10 9 29 29 H 1.08996 * 109.46779 * 299.99414 * 11 10 9 30 30 H 1.08995 * 109.47677 * 59.99401 * 12 11 10 31 31 H 1.09010 * 109.46937 * 299.99454 * 12 11 10 32 32 H 1.09002 * 109.47063 * 59.99956 * 14 13 12 33 33 H 1.08999 * 109.47467 * 300.00417 * 14 13 12 34 34 H 1.08998 * 109.47328 * 305.00414 * 15 14 13 35 35 H 1.08997 * 109.47540 * 185.00160 * 15 14 13 36 36 H 0.97000 * 120.00069 * 0.02562 * 16 15 14 37 37 H 1.09006 * 115.54513 * 213.47418 * 21 20 19 38 38 H 1.08998 * 117.49944 * 0.02562 * 22 21 20 39 39 H 1.09008 * 117.49634 * 145.01839 * 22 21 20 40 40 H 1.08994 * 117.49923 * 214.98032 * 23 21 20 41 41 H 1.09000 * 117.49171 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 6 1.0638 -4.8197 -0.0022 12 6 1.8289 -6.1447 -0.0029 13 8 0.9003 -7.2309 -0.0041 14 6 1.5148 -8.5209 -0.0054 15 6 0.4319 -9.6018 -0.0059 16 7 -0.3264 -9.5325 -1.2575 17 6 -1.3376 -10.3951 -1.4813 18 8 -1.6207 -11.2306 -0.6442 19 6 -2.0750 -10.3312 -2.7073 20 6 -2.6790 -10.2791 -3.7130 21 6 -3.4368 -10.2148 -4.9711 22 6 -2.6860 -9.7640 -6.2257 23 6 -3.7035 -8.8303 -5.5652 24 1 -0.4850 0.8401 0.0004 25 1 0.3556 -2.3880 -0.0016 26 1 2.6841 -3.7149 0.8888 27 1 2.6853 -3.7141 -0.8912 28 1 0.4375 -4.7617 -0.8924 29 1 0.4369 -4.7622 0.8875 30 1 2.4556 -6.2029 0.8870 31 1 2.4555 -6.2020 -0.8930 32 1 2.1349 -8.6289 0.8846 33 1 2.1351 -8.6271 -0.8953 34 1 -0.2414 -9.4419 0.8362 35 1 0.8979 -10.5831 0.0827 36 1 -0.1004 -8.8664 -1.9253 37 1 -4.2111 -10.9724 -5.0928 38 1 -1.6302 -9.5156 -6.1184 39 1 -2.9667 -10.2247 -7.1729 40 1 -4.6529 -8.6771 -6.0781 41 1 -3.3174 -7.9672 -5.0229 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506993351.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:47 Heat of formation + Delta-G solvation = -26.661001 kcal Electronic energy + Delta-G solvation = -19919.579202 eV Core-core repulsion = 16608.067363 eV Total energy + Delta-G solvation = -3311.511839 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.87624 -39.17877 -38.52559 -37.06405 -35.93167 -34.18833 -33.81275 -31.77539 -30.27409 -26.87905 -25.97603 -24.29914 -23.73035 -23.31162 -22.65982 -22.31206 -19.98215 -19.14273 -17.89239 -17.68703 -17.54980 -16.91968 -16.65289 -16.32430 -16.00877 -15.64088 -15.46587 -15.26532 -15.01056 -14.53556 -14.07711 -13.55354 -13.38838 -13.15901 -13.02518 -12.81601 -12.67126 -12.44246 -12.43591 -12.37827 -12.08302 -12.03585 -11.94729 -11.75526 -11.60650 -11.11207 -10.95133 -10.80264 -10.56567 -10.27330 -9.03573 -7.96792 -5.27099 0.33878 1.13795 1.47410 1.49851 1.58383 1.96258 2.21359 2.49233 2.64390 3.05095 3.08398 3.36973 3.78424 3.81446 3.98883 4.01032 4.06511 4.08000 4.18213 4.35105 4.41114 4.43216 4.50753 4.60957 4.72738 4.74618 4.76405 4.80059 4.85223 4.95787 5.07476 5.19620 5.20095 5.31686 5.32908 5.48076 6.09072 6.21758 6.26266 6.27359 6.92481 7.30965 8.06401 8.29034 9.27121 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014173 B = 0.002492 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.099894 B =11232.161864 C =12808.164564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.978 3.022 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.249 4.249 8 H 0.079 0.921 9 N -0.751 5.751 10 C 0.155 3.845 11 C -0.115 4.115 12 C 0.078 3.922 13 O -0.409 6.409 14 C 0.049 3.951 15 C 0.121 3.879 16 N -0.699 5.699 17 C 0.634 3.366 18 O -0.571 6.571 19 C -0.268 4.268 20 C -0.026 4.026 21 C -0.090 4.090 22 C -0.146 4.146 23 C -0.156 4.156 24 H 0.252 0.748 25 H 0.373 0.627 26 H 0.026 0.974 27 H 0.028 0.972 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.416 0.584 37 H 0.156 0.844 38 H 0.097 0.903 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.472 -23.492 -10.684 25.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.807 3.193 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.381 4.381 8 H 0.097 0.903 9 N -0.394 5.394 10 C 0.029 3.971 11 C -0.153 4.153 12 C 0.001 3.999 13 O -0.329 6.329 14 C -0.027 4.027 15 C -0.002 4.002 16 N -0.350 5.350 17 C 0.421 3.579 18 O -0.452 6.452 19 C -0.271 4.271 20 C -0.028 4.028 21 C -0.108 4.108 22 C -0.183 4.183 23 C -0.193 4.193 24 H 0.061 0.939 25 H 0.204 0.796 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.120 0.880 36 H 0.253 0.747 37 H 0.173 0.827 38 H 0.115 0.885 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.635 -23.938 -10.039 25.965 hybrid contribution 0.110 1.273 0.086 1.280 sum -0.525 -22.665 -9.953 24.760 Atomic orbital electron populations 1.69832 1.06789 1.26233 1.59377 1.25665 0.96470 1.01430 1.03520 0.85071 0.77682 0.79027 0.77556 1.21162 1.22182 1.19197 1.19683 0.91664 0.85248 1.41476 0.90265 1.42620 1.05735 1.01441 1.89582 1.20675 0.93818 0.84403 0.98238 1.21489 0.98641 0.92972 1.02184 1.22322 0.91157 0.84698 1.01701 1.87887 1.34779 1.14528 1.95751 1.22887 0.94651 0.81581 1.03580 1.21606 0.93659 0.99260 0.85633 1.45762 1.32736 1.34854 1.21644 1.14787 0.79394 0.80961 0.82713 1.90819 1.68919 1.38657 1.46812 1.20635 1.03858 1.06497 0.96139 1.22103 0.93375 0.94357 0.93011 1.19278 1.02474 1.02724 0.86308 1.23257 0.98370 1.01615 0.95016 1.23250 1.02696 0.91258 1.02089 0.93914 0.79570 0.95611 0.95361 0.92212 0.92547 0.91753 0.91449 0.89229 0.90433 0.91554 0.87952 0.74743 0.82693 0.88478 0.84898 0.85185 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.38 13.06 21.65 0.28 -60.09 16 2 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 3 Si 0.98 46.11 29.55 68.60 2.03 48.14 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.25 -14.07 9.99 84.03 0.84 -13.23 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 9 N -0.75 -39.07 5.60 -343.45 -1.92 -41.00 16 10 C 0.15 6.08 6.26 86.38 0.54 6.62 16 11 C -0.11 -3.71 5.70 30.60 0.17 -3.54 16 12 C 0.08 1.82 5.94 71.98 0.43 2.24 16 13 O -0.41 -9.46 10.29 -148.98 -1.53 -11.00 16 14 C 0.05 0.74 6.07 71.98 0.44 1.18 16 15 C 0.12 2.14 6.06 86.38 0.52 2.67 16 16 N -0.70 -14.26 5.49 -470.75 -2.59 -16.84 16 17 C 0.63 16.77 7.65 85.49 0.65 17.42 16 18 O -0.57 -19.05 17.09 -4.07 -0.07 -19.11 16 19 C -0.27 -6.52 13.62 30.01 0.41 -6.11 16 20 C -0.03 -0.52 13.46 31.07 0.42 -0.10 16 21 C -0.09 -1.08 6.21 -12.66 -0.08 -1.16 16 22 C -0.15 -1.20 10.21 30.62 0.31 -0.88 16 23 C -0.16 -1.51 10.21 30.62 0.31 -1.20 16 24 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 25 H 0.37 20.77 7.67 -92.71 -0.71 20.06 16 26 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.42 7.19 8.44 -92.71 -0.78 6.41 16 37 H 0.16 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.13 0.47 8.14 -2.38 -0.02 0.45 16 40 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -75.33 363.65 1.18 -74.15 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -0.46 Total: 25.97 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 5.44 Total: -0.20 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -4.23 Total: -117.94 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -1.60 Total: -30.11 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -75.33 1.18 -74.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506993351.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.488 kcal (2) G-P(sol) polarization free energy of solvation -75.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds