Wall clock time and date at job start Tue Mar 31 2020 01:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 115.56322 * 2 1 4 4 C 1.53005 * 117.49746 * 214.31321 * 2 1 3 5 5 C 1.53007 * 117.49473 * 145.69208 * 2 1 3 6 6 H 1.09002 * 117.51534 * 214.96499 * 5 2 1 7 7 C 1.52996 * 117.49995 * 0.02562 * 5 2 1 8 8 H 1.08995 * 115.56708 * 85.70123 * 7 5 2 9 9 C 1.53002 * 117.49644 * 231.39186 * 7 5 2 10 10 C 1.53004 * 60.00187 * 107.48688 * 9 7 5 11 11 H 1.08998 * 117.49840 * 252.51545 * 10 9 7 12 12 C 1.50700 * 117.49794 * 107.48757 * 10 9 7 13 13 O 1.20823 * 119.99843 * 291.37920 * 12 10 9 14 14 O 1.34231 * 119.99943 * 111.37600 * 12 10 9 15 15 C 1.45195 * 116.99944 * 179.97438 * 14 12 10 16 16 C 1.53001 * 109.46895 * 180.02562 * 15 14 12 17 17 C 1.50697 * 113.00088 * 53.52223 * 16 15 14 18 18 H 1.07997 * 120.00117 * 245.39475 * 17 16 15 19 19 C 1.37877 * 120.00030 * 65.39406 * 17 16 15 20 20 N 1.31507 * 120.00173 * 6.61404 * 19 17 16 21 21 Si 1.86798 * 119.99958 * 186.61067 * 19 17 16 22 22 H 1.48502 * 109.47041 * 89.99856 * 21 19 17 23 23 H 1.48504 * 109.47302 * 210.00147 * 21 19 17 24 24 H 1.48503 * 109.47154 * 330.00275 * 21 19 17 25 25 C 1.54029 * 113.81405 * 281.53016 * 16 15 14 26 26 O 1.44171 * 85.51948 * 223.19691 * 25 16 15 27 27 C 1.44171 * 93.34250 * 24.19801 * 26 25 16 28 28 H 1.09000 * 109.47272 * 274.31081 * 1 2 3 29 29 H 1.09003 * 109.46931 * 34.31283 * 1 2 3 30 30 H 1.08993 * 109.47254 * 154.30722 * 1 2 3 31 31 H 1.08992 * 117.50111 * 145.02502 * 4 2 1 32 32 H 1.08998 * 117.51796 * 359.97438 * 4 2 1 33 33 H 1.08994 * 117.49883 * 214.98036 * 9 7 5 34 34 H 1.09008 * 117.49758 * 359.97438 * 9 7 5 35 35 H 1.09002 * 109.47282 * 300.00629 * 15 14 12 36 36 H 1.09001 * 109.46992 * 60.00379 * 15 14 12 37 37 H 0.97002 * 120.00582 * 179.97438 * 20 19 17 38 38 H 1.08997 * 113.87241 * 337.34763 * 25 16 15 39 39 H 1.09006 * 113.86144 * 109.05313 * 25 16 15 40 40 H 1.08998 * 113.86608 * 221.66372 * 27 26 25 41 41 H 1.08996 * 113.87023 * 89.94940 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7651 5 6 2.2364 -1.1211 0.7650 6 1 3.1716 -0.8757 1.2682 7 6 1.3587 -2.1566 1.4708 8 1 1.0289 -2.9925 0.8540 9 6 1.6467 -2.4383 2.9469 10 6 0.3970 -1.6509 2.5481 11 1 0.3896 -0.5805 2.7537 12 6 -0.9338 -2.3467 2.6749 13 8 -1.2066 -3.2669 1.9411 14 8 -1.8158 -1.9441 3.6032 15 6 -3.0775 -2.6598 3.6679 16 6 -3.9460 -2.0629 4.7771 17 6 -4.1290 -0.5730 4.6442 18 1 -3.7208 0.0901 5.3926 19 6 -4.8176 -0.0563 3.5672 20 7 -5.4256 -0.8643 2.7265 21 14 -4.8871 1.7915 3.3024 22 1 -3.7422 2.2137 2.4561 23 1 -6.1604 2.1472 2.6260 24 1 -4.8139 2.4828 4.6147 25 6 -3.5473 -2.5196 6.1930 26 8 -4.9632 -2.6653 6.4222 27 6 -5.2585 -2.8315 5.0209 28 1 -0.3634 0.0772 1.0247 29 1 -0.3633 0.8489 -0.5793 30 1 -0.3633 -0.9260 -0.4455 31 1 3.1715 -0.8753 -1.2683 32 1 1.6115 -1.8589 -1.2681 33 1 1.5065 -3.4595 3.3010 34 1 2.4618 -1.8862 3.4149 35 1 -3.5955 -2.5700 2.7131 36 1 -2.8879 -3.7118 3.8809 37 1 -5.9104 -0.5009 1.9689 38 1 -2.9979 -3.4607 6.2146 39 1 -3.0815 -1.7382 6.7936 40 1 -6.1499 -2.2975 4.6917 41 1 -5.2317 -3.8679 4.6844 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001515952848.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:08 Heat of formation + Delta-G solvation = -53.802202 kcal Electronic energy + Delta-G solvation = -22573.478961 eV Core-core repulsion = 19228.497440 eV Total energy + Delta-G solvation = -3344.981521 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.16074 -39.25811 -38.41179 -35.94246 -34.95204 -32.90321 -29.99623 -28.64040 -25.96324 -25.36618 -24.83464 -23.75280 -23.18363 -21.43785 -19.98983 -19.16104 -18.95130 -17.10853 -16.57222 -15.92610 -15.71155 -15.59239 -14.90501 -14.66843 -14.40771 -14.24607 -14.12636 -13.42763 -12.92252 -12.90289 -12.41134 -12.28154 -12.00604 -11.85746 -11.56168 -11.53501 -11.32315 -11.00992 -10.85938 -10.76977 -10.67470 -10.46637 -10.10871 -9.93207 -9.82541 -9.65093 -9.42904 -9.40103 -9.05710 -8.76379 -8.30431 -6.17921 -4.20289 2.62923 3.24275 3.25623 3.32483 3.35816 3.64241 3.91869 4.33418 4.51035 4.68726 4.74284 4.89059 4.96799 5.01290 5.17690 5.23605 5.30931 5.37815 5.44973 5.64398 5.71274 5.82913 5.88290 5.94648 6.03827 6.05218 6.05988 6.13871 6.18498 6.22319 6.30633 6.38726 6.42676 6.56076 6.97150 7.13153 7.28011 7.34693 7.39001 7.78503 8.17842 8.50900 8.76714 9.43252 10.90652 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017016 B = 0.005582 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.075319 B = 5015.222871 C = 6080.924314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.145 4.145 3 H 0.103 0.897 4 C -0.172 4.172 5 C -0.126 4.126 6 H 0.108 0.892 7 C -0.090 4.090 8 H 0.118 0.882 9 C -0.145 4.145 10 C -0.155 4.155 11 H 0.134 0.866 12 C 0.482 3.518 13 O -0.526 6.526 14 O -0.325 6.325 15 C 0.083 3.917 16 C 0.033 3.967 17 C -0.484 4.484 18 H 0.066 0.934 19 C 0.067 3.933 20 N -0.889 5.889 21 Si 0.897 3.103 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.272 1.272 25 C 0.028 3.972 26 O -0.388 6.388 27 C 0.050 3.950 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.036 0.964 37 H 0.265 0.735 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.872 -0.618 -3.693 14.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.163 4.163 3 H 0.121 0.879 4 C -0.209 4.209 5 C -0.144 4.144 6 H 0.126 0.874 7 C -0.108 4.108 8 H 0.136 0.864 9 C -0.182 4.182 10 C -0.174 4.174 11 H 0.152 0.848 12 C 0.326 3.674 13 O -0.416 6.416 14 O -0.239 6.239 15 C 0.009 3.991 16 C 0.032 3.968 17 C -0.521 4.521 18 H 0.084 0.916 19 C -0.136 4.136 20 N -0.527 5.527 21 Si 0.725 3.275 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.049 4.049 26 O -0.307 6.307 27 C -0.027 4.027 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.443 -0.877 -3.807 14.000 hybrid contribution -0.100 0.843 -0.512 0.991 sum 13.344 -0.034 -4.319 14.025 Atomic orbital electron populations 1.21435 0.92262 1.02019 1.02795 1.22387 0.95882 0.93990 1.04034 0.87914 1.23136 1.02431 1.01954 0.93392 1.21839 0.99811 0.99103 0.93602 0.87359 1.21822 0.98192 0.99728 0.91029 0.86360 1.23092 0.96698 1.01094 0.97267 1.21837 0.87277 1.00940 1.07336 0.84809 1.22454 0.85701 0.81144 0.78149 1.90589 1.78268 1.29430 1.43363 1.86528 1.27417 1.58394 1.51558 1.23452 0.79951 0.91715 1.03965 1.21116 0.90199 0.97489 0.88009 1.20541 1.34787 0.88630 1.08187 0.91594 1.24944 0.94560 0.98385 0.95679 1.69884 1.33033 1.34804 1.14950 0.86497 0.77451 0.85074 0.78514 1.20465 1.21207 1.19681 1.24088 0.83938 0.98247 0.98592 1.89489 1.20857 1.93838 1.26550 1.23922 1.01916 0.96989 0.79862 0.91471 0.92378 0.92303 0.88886 0.88599 0.88139 0.87480 0.89726 0.94576 0.92571 0.92906 0.90368 0.88190 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 8.97 37.16 0.33 -1.39 16 2 C -0.14 -1.59 6.39 -90.61 -0.58 -2.17 16 3 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.17 -1.71 9.90 -26.72 -0.26 -1.98 16 5 C -0.13 -1.32 5.87 -90.61 -0.53 -1.85 16 6 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 7 C -0.09 -1.13 4.77 -90.62 -0.43 -1.56 16 8 H 0.12 1.66 7.67 -51.93 -0.40 1.26 16 9 C -0.14 -1.68 9.95 -26.73 -0.27 -1.95 16 10 C -0.15 -2.30 4.31 -91.77 -0.40 -2.70 16 11 H 0.13 1.91 7.29 -51.93 -0.38 1.53 16 12 C 0.48 9.50 7.74 36.01 0.28 9.78 16 13 O -0.53 -11.44 16.01 -18.75 -0.30 -11.74 16 14 O -0.32 -7.22 9.82 -39.26 -0.39 -7.61 16 15 C 0.08 1.94 4.67 37.16 0.17 2.11 16 16 C 0.03 0.79 0.62 -154.58 -0.10 0.69 16 17 C -0.48 -12.79 7.92 -34.44 -0.27 -13.06 16 18 H 0.07 1.75 7.82 -52.49 -0.41 1.34 16 19 C 0.07 1.77 5.25 -17.82 -0.09 1.67 16 20 N -0.89 -24.11 11.31 55.43 0.63 -23.48 16 21 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 C 0.03 0.62 8.35 37.60 0.31 0.93 16 26 O -0.39 -9.29 12.40 -35.23 -0.44 -9.72 16 27 C 0.05 1.19 7.91 37.61 0.30 1.48 16 28 H 0.07 1.01 5.95 -51.93 -0.31 0.70 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.85 7.90 -51.93 -0.41 0.44 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16 33 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.11 0.99 8.14 -51.92 -0.42 0.56 16 35 H 0.08 2.20 7.21 -51.93 -0.37 1.83 16 36 H 0.04 0.79 8.04 -51.93 -0.42 0.37 16 37 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.05 1.03 8.03 -51.93 -0.42 0.61 16 39 H 0.08 1.63 8.09 -51.93 -0.42 1.21 16 40 H 0.10 2.55 7.36 -51.93 -0.38 2.17 16 41 H 0.05 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 341.71 15.07 5.15 5.15 Total: -1.00 -29.07 341.71 -8.33 -37.40 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.43 Total: 4.21 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -1.54 Total: -9.99 kcal Atomic # 7 Polarization: -24.11 SS G_CDS: 0.63 Total: -23.48 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -1.12 Total: -29.07 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.07 -8.33 -37.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515952848.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.404 kcal (2) G-P(sol) polarization free energy of solvation -29.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds