Wall clock time and date at job start Tue Mar 31 2020 01:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 115.56322 * 2 1 4 4 C 1.53005 * 117.49746 * 214.31321 * 2 1 3 5 5 C 1.53007 * 117.49473 * 145.69208 * 2 1 3 6 6 H 1.09002 * 117.51534 * 214.96499 * 5 2 1 7 7 C 1.52996 * 117.49995 * 0.02562 * 5 2 1 8 8 H 1.08995 * 115.56708 * 85.70123 * 7 5 2 9 9 C 1.53002 * 117.49644 * 231.39186 * 7 5 2 10 10 C 1.53004 * 60.00187 * 107.48688 * 9 7 5 11 11 H 1.08998 * 117.49840 * 252.51545 * 10 9 7 12 12 C 1.50700 * 117.49794 * 107.48757 * 10 9 7 13 13 O 1.20823 * 119.99843 * 291.37920 * 12 10 9 14 14 O 1.34231 * 119.99943 * 111.37600 * 12 10 9 15 15 C 1.45195 * 116.99944 * 179.97438 * 14 12 10 16 16 C 1.53001 * 109.46895 * 180.02562 * 15 14 12 17 17 C 1.50697 * 113.00088 * 53.52223 * 16 15 14 18 18 H 1.07997 * 120.00117 * 245.39475 * 17 16 15 19 19 C 1.37877 * 120.00030 * 65.39406 * 17 16 15 20 20 N 1.31507 * 120.00173 * 6.61404 * 19 17 16 21 21 Si 1.86798 * 119.99958 * 186.61067 * 19 17 16 22 22 H 1.48502 * 109.47041 * 89.99856 * 21 19 17 23 23 H 1.48504 * 109.47302 * 210.00147 * 21 19 17 24 24 H 1.48503 * 109.47154 * 330.00275 * 21 19 17 25 25 C 1.54029 * 113.81405 * 281.53016 * 16 15 14 26 26 O 1.44171 * 85.51948 * 223.19691 * 25 16 15 27 27 C 1.44171 * 93.34250 * 24.19801 * 26 25 16 28 28 H 1.09000 * 109.47272 * 274.31081 * 1 2 3 29 29 H 1.09003 * 109.46931 * 34.31283 * 1 2 3 30 30 H 1.08993 * 109.47254 * 154.30722 * 1 2 3 31 31 H 1.08992 * 117.50111 * 145.02502 * 4 2 1 32 32 H 1.08998 * 117.51796 * 359.97438 * 4 2 1 33 33 H 1.08994 * 117.49883 * 214.98036 * 9 7 5 34 34 H 1.09008 * 117.49758 * 359.97438 * 9 7 5 35 35 H 1.09002 * 109.47282 * 300.00629 * 15 14 12 36 36 H 1.09001 * 109.46992 * 60.00379 * 15 14 12 37 37 H 0.97002 * 120.00582 * 179.97438 * 20 19 17 38 38 H 1.08997 * 113.87241 * 337.34763 * 25 16 15 39 39 H 1.09006 * 113.86144 * 109.05313 * 25 16 15 40 40 H 1.08998 * 113.86608 * 221.66372 * 27 26 25 41 41 H 1.08996 * 113.87023 * 89.94940 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7651 5 6 2.2364 -1.1211 0.7650 6 1 3.1716 -0.8757 1.2682 7 6 1.3587 -2.1566 1.4708 8 1 1.0289 -2.9925 0.8540 9 6 1.6467 -2.4383 2.9469 10 6 0.3970 -1.6509 2.5481 11 1 0.3896 -0.5805 2.7537 12 6 -0.9338 -2.3467 2.6749 13 8 -1.2066 -3.2669 1.9411 14 8 -1.8158 -1.9441 3.6032 15 6 -3.0775 -2.6598 3.6679 16 6 -3.9460 -2.0629 4.7771 17 6 -4.1290 -0.5730 4.6442 18 1 -3.7208 0.0901 5.3926 19 6 -4.8176 -0.0563 3.5672 20 7 -5.4256 -0.8643 2.7265 21 14 -4.8871 1.7915 3.3024 22 1 -3.7422 2.2137 2.4561 23 1 -6.1604 2.1472 2.6260 24 1 -4.8139 2.4828 4.6147 25 6 -3.5473 -2.5196 6.1930 26 8 -4.9632 -2.6653 6.4222 27 6 -5.2585 -2.8315 5.0209 28 1 -0.3634 0.0772 1.0247 29 1 -0.3633 0.8489 -0.5793 30 1 -0.3633 -0.9260 -0.4455 31 1 3.1715 -0.8753 -1.2683 32 1 1.6115 -1.8589 -1.2681 33 1 1.5065 -3.4595 3.3010 34 1 2.4618 -1.8862 3.4149 35 1 -3.5955 -2.5700 2.7131 36 1 -2.8879 -3.7118 3.8809 37 1 -5.9104 -0.5009 1.9689 38 1 -2.9979 -3.4607 6.2146 39 1 -3.0815 -1.7382 6.7936 40 1 -6.1499 -2.2975 4.6917 41 1 -5.2317 -3.8679 4.6844 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515952848.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:08 Heat of formation + Delta-G solvation = -68.900346 kcal Electronic energy + Delta-G solvation = -22574.133666 eV Core-core repulsion = 19228.497440 eV Total energy + Delta-G solvation = -3345.636225 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.69570 -40.97348 -39.59096 -37.45454 -36.15703 -34.89750 -31.89604 -29.67267 -27.68348 -27.18292 -26.64191 -25.12954 -24.32591 -22.29515 -21.41824 -20.87336 -20.12375 -18.62561 -18.37481 -17.50122 -17.36276 -16.77330 -16.65668 -16.29255 -16.22122 -15.94146 -15.39740 -14.65498 -14.54161 -14.05591 -13.91942 -13.77093 -13.57303 -13.30535 -13.05031 -12.88675 -12.63052 -12.40137 -12.37308 -12.28136 -11.89412 -11.85352 -11.78635 -11.59260 -11.30945 -11.27052 -10.93262 -10.74996 -10.71176 -10.44333 -10.21738 -8.20270 -6.28029 1.14696 1.39750 1.41476 1.50562 1.80981 2.39448 2.60800 2.96220 2.99095 3.20957 3.53894 3.65992 3.70996 3.89264 4.04777 4.09120 4.21063 4.24264 4.31112 4.39578 4.43443 4.46163 4.50140 4.56572 4.71983 4.78071 4.83633 4.87518 4.95704 4.98916 5.12312 5.15790 5.19909 5.21549 5.32630 5.41048 5.45570 5.48729 5.69737 5.71281 6.21318 6.70403 6.87818 7.37715 8.87003 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017016 B = 0.005582 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.075319 B = 5015.222871 C = 6080.924314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.152 4.152 3 H 0.123 0.877 4 C -0.165 4.165 5 C -0.121 4.121 6 H 0.138 0.862 7 C -0.084 4.084 8 H 0.098 0.902 9 C -0.117 4.117 10 C -0.176 4.176 11 H 0.140 0.860 12 C 0.477 3.523 13 O -0.554 6.554 14 O -0.338 6.338 15 C 0.095 3.905 16 C 0.016 3.984 17 C -0.498 4.498 18 H 0.059 0.941 19 C 0.024 3.976 20 N -0.911 5.911 21 Si 0.950 3.050 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.267 1.267 25 C 0.039 3.961 26 O -0.402 6.402 27 C 0.054 3.946 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.144 0.856 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.263 0.737 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.607 0.040 -3.358 16.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.170 4.170 3 H 0.141 0.859 4 C -0.202 4.202 5 C -0.139 4.139 6 H 0.156 0.844 7 C -0.103 4.103 8 H 0.116 0.884 9 C -0.153 4.153 10 C -0.195 4.195 11 H 0.158 0.842 12 C 0.322 3.678 13 O -0.447 6.447 14 O -0.252 6.252 15 C 0.020 3.980 16 C 0.015 3.985 17 C -0.535 4.535 18 H 0.077 0.923 19 C -0.176 4.176 20 N -0.549 5.549 21 Si 0.775 3.225 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.191 1.191 25 C -0.038 4.038 26 O -0.321 6.321 27 C -0.023 4.023 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.137 0.863 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.162 0.838 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 16.190 -0.219 -3.464 16.558 hybrid contribution -0.952 0.587 -0.640 1.289 sum 15.238 0.369 -4.104 15.785 Atomic orbital electron populations 1.21392 0.94734 1.01126 1.01291 1.22380 0.93964 0.95384 1.05287 0.85923 1.23204 1.02994 1.00766 0.93192 1.21943 1.00097 0.97874 0.93957 0.84446 1.21861 0.97319 0.99547 0.91545 0.88389 1.23309 0.94933 1.00850 0.96234 1.21895 0.85641 1.01141 1.10836 0.84180 1.23429 0.86618 0.80855 0.76857 1.90565 1.78978 1.30978 1.44140 1.86530 1.27246 1.58744 1.52719 1.23124 0.80490 0.92458 1.01897 1.21197 0.90856 0.96609 0.89807 1.20761 1.34676 0.89985 1.08112 0.92296 1.25599 0.94415 1.01967 0.95578 1.69986 1.33583 1.36142 1.15228 0.85669 0.77401 0.80869 0.78515 1.20107 1.21026 1.19101 1.24183 0.83207 0.99777 0.96624 1.89461 1.22237 1.94031 1.26408 1.23828 1.00764 0.97804 0.79903 0.93514 0.91916 0.94357 0.86322 0.89878 0.88225 0.83844 0.93167 0.93307 0.92778 0.90038 0.89597 0.90631 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 8.97 71.98 0.65 -2.81 16 2 C -0.15 -3.02 6.39 -10.79 -0.07 -3.09 16 3 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 4 C -0.16 -2.86 9.90 30.60 0.30 -2.56 16 5 C -0.12 -2.18 5.87 -10.79 -0.06 -2.24 16 6 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 7 C -0.08 -1.99 4.77 -10.79 -0.05 -2.04 16 8 H 0.10 2.74 7.67 -2.39 -0.02 2.72 16 9 C -0.12 -2.38 9.95 30.60 0.30 -2.08 16 10 C -0.18 -5.07 4.31 -11.54 -0.05 -5.12 16 11 H 0.14 3.85 7.29 -2.39 -0.02 3.83 16 12 C 0.48 19.05 7.74 71.24 0.55 19.60 16 13 O -0.55 -24.82 16.01 21.97 0.35 -24.47 16 14 O -0.34 -15.20 9.82 -51.43 -0.51 -15.71 16 15 C 0.09 4.50 4.67 71.98 0.34 4.83 16 16 C 0.02 0.77 0.62 -52.23 -0.03 0.74 16 17 C -0.50 -26.60 7.92 25.60 0.20 -26.40 16 18 H 0.06 3.15 7.82 -2.91 -0.02 3.13 16 19 C 0.02 1.31 5.25 84.66 0.44 1.76 16 20 N -0.91 -50.72 11.31 21.45 0.24 -50.48 16 21 Si 0.95 43.02 29.54 68.60 2.03 45.05 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 C 0.04 1.63 8.35 72.27 0.60 2.23 16 26 O -0.40 -18.97 12.40 -148.98 -1.85 -20.81 16 27 C 0.05 2.58 7.91 72.28 0.57 3.15 16 28 H 0.05 1.43 5.95 -2.39 -0.01 1.41 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.04 1.14 7.90 -2.39 -0.02 1.12 16 31 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 1.67 8.05 -2.39 -0.02 1.65 16 33 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.14 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.05 2.71 7.21 -2.39 -0.02 2.70 16 36 H 0.05 2.14 8.04 -2.39 -0.02 2.12 16 37 H 0.26 14.13 8.31 -92.71 -0.77 13.35 16 38 H 0.08 2.97 8.03 -2.39 -0.02 2.95 16 39 H 0.09 3.47 8.09 -2.38 -0.02 3.45 16 40 H 0.08 3.95 7.36 -2.39 -0.02 3.94 16 41 H 0.07 2.90 8.10 -2.39 -0.02 2.88 16 Total: -1.00 -64.05 341.71 4.98 -59.07 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 1.01 Total: 21.37 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: 3.70 Total: -14.02 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.24 Total: -50.48 kcal Atomic # 8 Polarization: -58.99 SS G_CDS: -2.00 Total: -60.99 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -64.05 4.98 -59.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515952848.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.828 kcal (2) G-P(sol) polarization free energy of solvation -64.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds