Wall clock time and date at job start Tue Mar 31 2020 01:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 115.55116 * 2 1 4 4 C 1.53009 * 117.51691 * 214.30129 * 2 1 3 5 5 C 1.53007 * 117.49887 * 145.67248 * 2 1 3 6 6 H 1.09000 * 117.49500 * 215.02176 * 5 2 1 7 7 C 1.52995 * 117.49711 * 0.02562 * 5 2 1 8 8 H 1.09001 * 115.56384 * 34.30589 * 7 5 2 9 9 C 1.53072 * 117.49051 * 248.60052 * 7 5 2 10 10 C 1.52994 * 59.98669 * 252.51316 * 9 7 5 11 11 H 1.09003 * 117.49785 * 107.49722 * 10 9 7 12 12 C 1.50699 * 117.50101 * 252.49956 * 10 9 7 13 13 O 1.20826 * 119.99943 * 68.74829 * 12 10 9 14 14 O 1.34228 * 119.99932 * 248.74103 * 12 10 9 15 15 C 1.45198 * 116.99991 * 179.97438 * 14 12 10 16 16 C 1.52997 * 109.47343 * 180.02562 * 15 14 12 17 17 C 1.50703 * 113.07875 * 53.44964 * 16 15 14 18 18 H 1.08003 * 119.99858 * 246.87656 * 17 16 15 19 19 C 1.37872 * 120.00309 * 66.87910 * 17 16 15 20 20 N 1.31517 * 120.00011 * 2.19736 * 19 17 16 21 21 Si 1.86801 * 120.00362 * 182.19957 * 19 17 16 22 22 H 1.48498 * 109.46909 * 89.99690 * 21 19 17 23 23 H 1.48500 * 109.47122 * 209.99871 * 21 19 17 24 24 H 1.48504 * 109.46716 * 329.99772 * 21 19 17 25 25 C 1.54027 * 113.81890 * 281.54250 * 16 15 14 26 26 O 1.44182 * 85.51947 * 223.19392 * 25 16 15 27 27 C 1.44178 * 93.33608 * 24.19480 * 26 25 16 28 28 H 1.09000 * 109.47085 * 274.32716 * 1 2 3 29 29 H 1.08995 * 109.47010 * 34.32794 * 1 2 3 30 30 H 1.09004 * 109.47126 * 154.32696 * 1 2 3 31 31 H 1.09001 * 117.49577 * 145.03057 * 4 2 1 32 32 H 1.08990 * 117.49658 * 0.02562 * 4 2 1 33 33 H 1.09006 * 117.51776 * 145.03528 * 9 7 5 34 34 H 1.09003 * 117.50186 * 0.02562 * 9 7 5 35 35 H 1.09004 * 109.47031 * 60.00434 * 15 14 12 36 36 H 1.08999 * 109.47190 * 300.00964 * 15 14 12 37 37 H 0.96997 * 120.00355 * 180.02562 * 20 19 17 38 38 H 1.09006 * 113.86643 * 337.34011 * 25 16 15 39 39 H 1.08998 * 113.86657 * 109.04668 * 25 16 15 40 40 H 1.09001 * 113.85932 * 221.66060 * 27 26 25 41 41 H 1.08994 * 113.98640 * 89.97330 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1210 -0.7647 5 6 2.2364 -1.1208 0.7654 6 1 3.1712 -0.8746 1.2691 7 6 1.3588 -2.1561 1.4716 8 1 0.4239 -2.4021 0.9680 9 6 1.3588 -2.1561 3.0023 10 6 2.0652 -3.2768 2.2370 11 1 3.1553 -3.2768 2.2369 12 6 1.4153 -4.6365 2.2369 13 8 0.3759 -4.8092 1.6454 14 8 1.9910 -5.6556 2.8939 15 6 1.3088 -6.9366 2.8514 16 6 2.1086 -7.9672 3.6508 17 6 2.4136 -7.5172 5.0564 18 1 3.4332 -7.3146 5.3493 19 6 1.3910 -7.3641 5.9685 20 7 0.1547 -7.6521 5.6248 21 14 1.7616 -6.7474 7.6924 22 1 1.6724 -5.2653 7.7177 23 1 0.7761 -7.3189 8.6450 24 1 3.1307 -7.1678 8.0848 25 6 3.3303 -8.5266 2.8979 26 8 2.9146 -9.8098 3.4072 27 6 1.5422 -9.3970 3.5646 28 1 -0.3633 0.0775 1.0247 29 1 -0.3633 0.8486 -0.5795 30 1 -0.3633 -0.9262 -0.4452 31 1 3.1721 -0.8750 -1.2677 32 1 1.6119 -1.8584 -1.2683 33 1 0.4239 -2.4022 3.5059 34 1 1.9837 -1.4184 3.5056 35 1 1.2213 -7.2675 1.8165 36 1 0.3142 -6.8331 3.2850 37 1 -0.5648 -7.5441 6.2663 38 1 3.2587 -8.4382 1.8138 39 1 4.2867 -8.1841 3.2931 40 1 1.0803 -9.7449 4.4886 41 1 0.9227 -9.5738 2.6854 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001515952849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:11 Heat of formation + Delta-G solvation = -56.149859 kcal Electronic energy + Delta-G solvation = -22107.517458 eV Core-core repulsion = 18762.434135 eV Total energy + Delta-G solvation = -3345.083323 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.08529 -39.23498 -38.43218 -36.03707 -35.03207 -32.89411 -29.98037 -28.66804 -26.03521 -25.37192 -24.86187 -23.78477 -23.13027 -21.50129 -19.86321 -19.31851 -18.98462 -17.07753 -16.62894 -16.03964 -15.72963 -15.41480 -14.93231 -14.63111 -14.36222 -14.31659 -14.02010 -13.38438 -13.21272 -12.80786 -12.59246 -12.47849 -12.03801 -11.88842 -11.64668 -11.55835 -11.31387 -11.05103 -10.99976 -10.76336 -10.67212 -10.46372 -10.09003 -9.93015 -9.89373 -9.65995 -9.42525 -9.38095 -9.04778 -8.73879 -8.32132 -6.16898 -4.20217 2.65106 3.19886 3.26134 3.32779 3.36545 3.55498 4.09730 4.33867 4.44714 4.57533 4.76208 4.88595 4.90679 5.08309 5.15420 5.19181 5.20283 5.24170 5.42963 5.65014 5.66946 5.68512 5.73561 5.88037 5.91339 6.00835 6.06416 6.07218 6.15359 6.19011 6.26578 6.30966 6.39365 6.57475 6.98275 7.12493 7.27747 7.34912 7.39991 7.78844 8.18004 8.52375 8.77005 9.43773 10.91593 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020060 B = 0.004382 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.512307 B = 6388.167739 C = 7158.894328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.147 4.147 3 H 0.103 0.897 4 C -0.173 4.173 5 C -0.121 4.121 6 H 0.107 0.893 7 C -0.092 4.092 8 H 0.119 0.881 9 C -0.141 4.141 10 C -0.156 4.156 11 H 0.132 0.868 12 C 0.483 3.517 13 O -0.527 6.527 14 O -0.325 6.325 15 C 0.083 3.917 16 C 0.033 3.967 17 C -0.484 4.484 18 H 0.066 0.934 19 C 0.066 3.934 20 N -0.891 5.891 21 Si 0.899 3.101 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.272 1.272 25 C 0.028 3.972 26 O -0.388 6.388 27 C 0.050 3.950 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.036 0.964 36 H 0.086 0.914 37 H 0.264 0.736 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.262 13.128 -8.714 15.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.165 4.165 3 H 0.121 0.879 4 C -0.210 4.210 5 C -0.140 4.140 6 H 0.125 0.875 7 C -0.110 4.110 8 H 0.137 0.863 9 C -0.178 4.178 10 C -0.175 4.175 11 H 0.150 0.850 12 C 0.326 3.674 13 O -0.418 6.418 14 O -0.239 6.239 15 C 0.009 3.991 16 C 0.032 3.968 17 C -0.521 4.521 18 H 0.084 0.916 19 C -0.136 4.136 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.049 4.049 26 O -0.307 6.307 27 C -0.027 4.027 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.054 0.946 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.910 12.757 -8.727 15.574 hybrid contribution -0.077 0.336 0.834 0.902 sum 1.833 13.093 -7.893 15.398 Atomic orbital electron populations 1.21366 0.92769 1.01868 1.02113 1.22345 0.95613 0.94095 1.04478 0.87878 1.23130 1.02584 1.01465 0.93852 1.21817 0.99937 0.98518 0.93681 0.87530 1.21861 1.00003 0.95359 0.93793 0.86302 1.23049 1.02430 0.98334 0.94010 1.21755 1.00561 0.86379 1.08838 0.85032 1.22438 0.82757 0.86554 0.75640 1.90587 1.23771 1.84580 1.42820 1.86522 1.51839 1.19863 1.65669 1.23465 0.98763 0.79325 0.97541 1.21108 0.89995 0.90097 0.95567 1.20558 0.93982 1.44793 0.92770 0.91604 1.24953 0.94927 0.94781 0.98986 1.69880 0.99414 1.47847 1.35698 0.86461 0.78297 0.78999 0.83551 1.20544 1.21178 1.19672 1.24098 1.00506 0.84095 0.96220 1.89492 1.23366 1.33243 1.84594 1.23896 0.83624 0.95131 1.00023 0.91890 0.92443 0.92307 0.88789 0.88529 0.87933 0.87446 0.94608 0.89610 0.92591 0.92882 0.90364 0.88343 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.05 37.16 0.34 -0.76 16 2 C -0.15 -1.31 6.41 -90.61 -0.58 -1.89 16 3 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.17 -1.63 9.90 -26.72 -0.26 -1.90 16 5 C -0.12 -1.23 5.85 -90.61 -0.53 -1.76 16 6 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 7 C -0.09 -1.17 4.69 -90.58 -0.43 -1.59 16 8 H 0.12 1.67 6.72 -51.93 -0.35 1.32 16 9 C -0.14 -1.83 9.96 -26.70 -0.27 -2.09 16 10 C -0.16 -2.35 6.02 -91.77 -0.55 -2.90 16 11 H 0.13 1.74 8.14 -51.93 -0.42 1.32 16 12 C 0.48 9.67 7.74 36.01 0.28 9.94 16 13 O -0.53 -11.63 16.01 -18.75 -0.30 -11.93 16 14 O -0.32 -7.30 9.83 -39.25 -0.39 -7.69 16 15 C 0.08 1.95 4.68 37.16 0.17 2.13 16 16 C 0.03 0.80 0.62 -154.58 -0.10 0.70 16 17 C -0.48 -12.84 7.93 -34.44 -0.27 -13.12 16 18 H 0.07 1.76 7.81 -52.48 -0.41 1.35 16 19 C 0.07 1.75 5.24 -17.82 -0.09 1.66 16 20 N -0.89 -24.22 11.30 55.43 0.63 -23.59 16 21 Si 0.90 20.87 29.54 -169.99 -5.02 15.84 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 C 0.03 0.61 8.34 37.60 0.31 0.92 16 26 O -0.39 -9.29 12.40 -35.23 -0.44 -9.73 16 27 C 0.05 1.19 7.91 37.61 0.30 1.49 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.56 7.40 -51.93 -0.38 0.18 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16 33 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 34 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.04 0.79 8.04 -51.93 -0.42 0.37 16 36 H 0.09 2.25 7.15 -51.93 -0.37 1.88 16 37 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.05 1.04 8.03 -51.93 -0.42 0.62 16 39 H 0.08 1.64 8.09 -51.93 -0.42 1.22 16 40 H 0.10 2.51 7.39 -51.93 -0.38 2.12 16 41 H 0.05 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 344.95 15.07 5.20 5.20 Total: -1.00 -29.39 344.95 -8.51 -37.90 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -6.51 Total: 3.17 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -1.68 Total: -9.17 kcal Atomic # 7 Polarization: -24.22 SS G_CDS: 0.63 Total: -23.59 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -1.12 Total: -29.35 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.39 -8.51 -37.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515952849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.253 kcal (2) G-P(sol) polarization free energy of solvation -29.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds