Wall clock time and date at job start Tue Mar 31 2020 01:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 115.55116 * 2 1 4 4 C 1.53009 * 117.51691 * 214.30129 * 2 1 3 5 5 C 1.53007 * 117.49887 * 145.67248 * 2 1 3 6 6 H 1.09000 * 117.49500 * 215.02176 * 5 2 1 7 7 C 1.52995 * 117.49711 * 0.02562 * 5 2 1 8 8 H 1.09001 * 115.56384 * 34.30589 * 7 5 2 9 9 C 1.53072 * 117.49051 * 248.60052 * 7 5 2 10 10 C 1.52994 * 59.98669 * 252.51316 * 9 7 5 11 11 H 1.09003 * 117.49785 * 107.49722 * 10 9 7 12 12 C 1.50699 * 117.50101 * 252.49956 * 10 9 7 13 13 O 1.20826 * 119.99943 * 68.74829 * 12 10 9 14 14 O 1.34228 * 119.99932 * 248.74103 * 12 10 9 15 15 C 1.45198 * 116.99991 * 179.97438 * 14 12 10 16 16 C 1.52997 * 109.47343 * 180.02562 * 15 14 12 17 17 C 1.50703 * 113.07875 * 53.44964 * 16 15 14 18 18 H 1.08003 * 119.99858 * 246.87656 * 17 16 15 19 19 C 1.37872 * 120.00309 * 66.87910 * 17 16 15 20 20 N 1.31517 * 120.00011 * 2.19736 * 19 17 16 21 21 Si 1.86801 * 120.00362 * 182.19957 * 19 17 16 22 22 H 1.48498 * 109.46909 * 89.99690 * 21 19 17 23 23 H 1.48500 * 109.47122 * 209.99871 * 21 19 17 24 24 H 1.48504 * 109.46716 * 329.99772 * 21 19 17 25 25 C 1.54027 * 113.81890 * 281.54250 * 16 15 14 26 26 O 1.44182 * 85.51947 * 223.19392 * 25 16 15 27 27 C 1.44178 * 93.33608 * 24.19480 * 26 25 16 28 28 H 1.09000 * 109.47085 * 274.32716 * 1 2 3 29 29 H 1.08995 * 109.47010 * 34.32794 * 1 2 3 30 30 H 1.09004 * 109.47126 * 154.32696 * 1 2 3 31 31 H 1.09001 * 117.49577 * 145.03057 * 4 2 1 32 32 H 1.08990 * 117.49658 * 0.02562 * 4 2 1 33 33 H 1.09006 * 117.51776 * 145.03528 * 9 7 5 34 34 H 1.09003 * 117.50186 * 0.02562 * 9 7 5 35 35 H 1.09004 * 109.47031 * 60.00434 * 15 14 12 36 36 H 1.08999 * 109.47190 * 300.00964 * 15 14 12 37 37 H 0.96997 * 120.00355 * 180.02562 * 20 19 17 38 38 H 1.09006 * 113.86643 * 337.34011 * 25 16 15 39 39 H 1.08998 * 113.86657 * 109.04668 * 25 16 15 40 40 H 1.09001 * 113.85932 * 221.66060 * 27 26 25 41 41 H 1.08994 * 113.98640 * 89.97330 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1210 -0.7647 5 6 2.2364 -1.1208 0.7654 6 1 3.1712 -0.8746 1.2691 7 6 1.3588 -2.1561 1.4716 8 1 0.4239 -2.4021 0.9680 9 6 1.3588 -2.1561 3.0023 10 6 2.0652 -3.2768 2.2370 11 1 3.1553 -3.2768 2.2369 12 6 1.4153 -4.6365 2.2369 13 8 0.3759 -4.8092 1.6454 14 8 1.9910 -5.6556 2.8939 15 6 1.3088 -6.9366 2.8514 16 6 2.1086 -7.9672 3.6508 17 6 2.4136 -7.5172 5.0564 18 1 3.4332 -7.3146 5.3493 19 6 1.3910 -7.3641 5.9685 20 7 0.1547 -7.6521 5.6248 21 14 1.7616 -6.7474 7.6924 22 1 1.6724 -5.2653 7.7177 23 1 0.7761 -7.3189 8.6450 24 1 3.1307 -7.1678 8.0848 25 6 3.3303 -8.5266 2.8979 26 8 2.9146 -9.8098 3.4072 27 6 1.5422 -9.3970 3.5646 28 1 -0.3633 0.0775 1.0247 29 1 -0.3633 0.8486 -0.5795 30 1 -0.3633 -0.9262 -0.4452 31 1 3.1721 -0.8750 -1.2677 32 1 1.6119 -1.8584 -1.2683 33 1 0.4239 -2.4022 3.5059 34 1 1.9837 -1.4184 3.5056 35 1 1.2213 -7.2675 1.8165 36 1 0.3142 -6.8331 3.2850 37 1 -0.5648 -7.5441 6.2663 38 1 3.2587 -8.4382 1.8138 39 1 4.2867 -8.1841 3.2931 40 1 1.0803 -9.7449 4.4886 41 1 0.9227 -9.5738 2.6854 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515952849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:10 Heat of formation + Delta-G solvation = -71.200835 kcal Electronic energy + Delta-G solvation = -22108.170117 eV Core-core repulsion = 18762.434135 eV Total energy + Delta-G solvation = -3345.735982 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.66734 -40.95273 -39.51988 -37.49698 -36.29737 -34.88715 -31.88725 -29.38439 -27.74222 -27.19216 -26.67876 -25.18585 -24.31287 -22.29444 -21.31457 -20.86080 -20.21491 -18.59825 -18.35957 -17.62950 -17.35460 -16.77915 -16.59336 -16.21601 -16.20720 -15.98371 -15.26984 -14.67710 -14.25249 -14.05534 -13.95943 -13.70787 -13.64721 -13.36240 -13.15486 -12.86580 -12.62108 -12.37834 -12.36356 -12.24464 -11.92217 -11.87220 -11.78275 -11.64770 -11.32652 -11.27885 -10.93137 -10.71387 -10.69227 -10.37007 -10.22501 -8.18689 -6.27828 1.13918 1.41641 1.43137 1.52724 1.78516 2.40830 2.53063 2.99045 3.15473 3.22224 3.48314 3.62338 3.74622 3.90145 4.03173 4.18366 4.21281 4.25266 4.29153 4.33821 4.43378 4.46739 4.51004 4.56871 4.72018 4.77037 4.89511 4.94702 4.97924 4.98800 5.13104 5.15600 5.19501 5.21958 5.35782 5.45135 5.47943 5.48797 5.69547 5.71912 6.21535 6.70975 6.87065 7.38550 8.88454 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020060 B = 0.004382 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.512307 B = 6388.167739 C = 7158.894328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.137 4.137 3 H 0.124 0.876 4 C -0.177 4.177 5 C -0.129 4.129 6 H 0.125 0.875 7 C -0.076 4.076 8 H 0.099 0.901 9 C -0.132 4.132 10 C -0.173 4.173 11 H 0.154 0.846 12 C 0.476 3.524 13 O -0.555 6.555 14 O -0.337 6.337 15 C 0.094 3.906 16 C 0.017 3.983 17 C -0.499 4.499 18 H 0.059 0.941 19 C 0.023 3.977 20 N -0.913 5.913 21 Si 0.954 3.046 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.268 1.268 25 C 0.037 3.963 26 O -0.401 6.401 27 C 0.054 3.946 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.263 0.737 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.700 15.137 -9.071 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.155 4.155 3 H 0.142 0.858 4 C -0.214 4.214 5 C -0.147 4.147 6 H 0.143 0.857 7 C -0.094 4.094 8 H 0.117 0.883 9 C -0.169 4.169 10 C -0.192 4.192 11 H 0.172 0.828 12 C 0.321 3.679 13 O -0.448 6.448 14 O -0.252 6.252 15 C 0.020 3.980 16 C 0.016 3.984 17 C -0.536 4.536 18 H 0.077 0.923 19 C -0.177 4.177 20 N -0.551 5.551 21 Si 0.780 3.220 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.192 1.192 25 C -0.039 4.039 26 O -0.321 6.321 27 C -0.023 4.023 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.129 0.871 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.158 0.842 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.357 14.773 -9.092 17.668 hybrid contribution -0.568 -0.278 0.890 1.092 sum 2.789 14.494 -8.202 16.886 Atomic orbital electron populations 1.21400 0.93183 1.01827 1.02059 1.22452 0.95357 0.94634 1.03025 0.85780 1.23189 1.03289 1.01510 0.93361 1.21852 1.00401 0.98445 0.93975 0.85698 1.21847 0.99236 0.94480 0.93817 0.88296 1.23199 1.01848 0.97427 0.94454 1.21916 1.01565 0.83918 1.11759 0.82844 1.23445 0.82518 0.87550 0.74355 1.90564 1.25170 1.85097 1.43926 1.86524 1.52099 1.20027 1.66508 1.23147 0.97023 0.80196 0.97647 1.21185 0.91588 0.90362 0.95223 1.20786 0.93701 1.44995 0.94163 0.92273 1.25622 0.94820 0.95002 1.02211 1.69987 0.99975 1.48570 1.36558 0.85603 0.78178 0.78551 0.79689 1.20088 1.21000 1.19204 1.24193 0.99744 0.82397 0.97567 1.89464 1.23363 1.34226 1.85018 1.23813 0.83840 0.94816 0.99844 0.92220 0.90929 0.93723 0.87073 0.89904 0.89565 0.84210 0.93439 0.92952 0.92764 0.90105 0.89575 0.90691 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.05 71.98 0.65 -1.41 16 2 C -0.14 -2.06 6.41 -10.79 -0.07 -2.13 16 3 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 4 C -0.18 -2.93 9.90 30.60 0.30 -2.63 16 5 C -0.13 -2.27 5.85 -10.79 -0.06 -2.33 16 6 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 7 C -0.08 -1.82 4.69 -10.77 -0.05 -1.87 16 8 H 0.10 2.80 6.72 -2.39 -0.02 2.79 16 9 C -0.13 -3.21 9.96 30.62 0.30 -2.91 16 10 C -0.17 -5.00 6.02 -11.54 -0.07 -5.07 16 11 H 0.15 3.72 8.14 -2.39 -0.02 3.70 16 12 C 0.48 19.18 7.74 71.24 0.55 19.73 16 13 O -0.56 -25.11 16.01 21.96 0.35 -24.76 16 14 O -0.34 -15.23 9.83 -51.40 -0.50 -15.73 16 15 C 0.09 4.49 4.68 71.98 0.34 4.83 16 16 C 0.02 0.83 0.62 -52.23 -0.03 0.80 16 17 C -0.50 -26.63 7.93 25.60 0.20 -26.42 16 18 H 0.06 3.16 7.81 -2.91 -0.02 3.13 16 19 C 0.02 1.25 5.24 84.65 0.44 1.69 16 20 N -0.91 -50.56 11.30 21.45 0.24 -50.32 16 21 Si 0.95 42.80 29.54 68.60 2.03 44.83 16 22 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 25 C 0.04 1.59 8.34 72.27 0.60 2.19 16 26 O -0.40 -18.94 12.40 -148.98 -1.85 -20.79 16 27 C 0.05 2.57 7.91 72.27 0.57 3.14 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.04 0.84 7.40 -2.39 -0.02 0.82 16 31 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 1.61 8.05 -2.39 -0.02 1.59 16 33 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 34 H 0.14 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.05 2.10 8.04 -2.39 -0.02 2.08 16 36 H 0.05 2.83 7.15 -2.39 -0.02 2.81 16 37 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 38 H 0.08 2.97 8.03 -2.38 -0.02 2.95 16 39 H 0.09 3.49 8.09 -2.39 -0.02 3.47 16 40 H 0.07 3.90 7.39 -2.39 -0.02 3.89 16 41 H 0.07 2.92 8.10 -2.39 -0.02 2.90 16 Total: -1.00 -63.62 344.95 4.96 -58.66 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 1.01 Total: 20.49 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 3.68 Total: -12.39 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 0.24 Total: -50.32 kcal Atomic # 8 Polarization: -59.28 SS G_CDS: -2.00 Total: -61.28 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -63.62 4.96 -58.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515952849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.538 kcal (2) G-P(sol) polarization free energy of solvation -63.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds