Wall clock time and date at job start Tue Mar 31 2020 01:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 115.54514 * 2 1 4 4 C 1.52999 * 117.49957 * 214.33640 * 2 1 3 5 5 C 1.52996 * 117.50180 * 145.71248 * 2 1 3 6 6 H 1.09000 * 117.49720 * 214.97707 * 5 2 1 7 7 C 1.53006 * 117.49782 * 359.97438 * 5 2 1 8 8 H 1.08998 * 115.54809 * 40.18495 * 7 5 2 9 9 C 1.52999 * 117.49654 * 185.85117 * 7 5 2 10 10 C 1.53005 * 117.49866 * 254.47407 * 7 5 2 11 11 H 1.08991 * 117.49572 * 145.01732 * 10 7 5 12 12 C 1.50700 * 117.49683 * 359.97438 * 10 7 5 13 13 O 1.20827 * 120.00361 * 5.41861 * 12 10 7 14 14 O 1.34234 * 119.99793 * 185.40997 * 12 10 7 15 15 C 1.45199 * 116.99877 * 180.02562 * 14 12 10 16 16 C 1.53001 * 109.46997 * 180.02562 * 15 14 12 17 17 C 1.50694 * 113.00195 * 55.25988 * 16 15 14 18 18 H 1.08004 * 120.00231 * 245.03922 * 17 16 15 19 19 C 1.37875 * 120.00037 * 65.04331 * 17 16 15 20 20 N 1.31510 * 120.00106 * 5.07116 * 19 17 16 21 21 Si 1.86798 * 120.00251 * 185.07072 * 19 17 16 22 22 H 1.48508 * 109.47143 * 59.99869 * 21 19 17 23 23 H 1.48502 * 109.47535 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47309 * 300.00198 * 21 19 17 25 25 C 1.54036 * 113.81058 * 283.43849 * 16 15 14 26 26 O 1.44448 * 85.42501 * 223.23652 * 25 16 15 27 27 C 1.44183 * 93.37818 * 24.08947 * 26 25 16 28 28 H 1.08992 * 109.47262 * 149.30436 * 1 2 3 29 29 H 1.09004 * 109.46688 * 269.29984 * 1 2 3 30 30 H 1.09000 * 109.47367 * 29.30101 * 1 2 3 31 31 H 1.08997 * 117.49498 * 359.97438 * 4 2 1 32 32 H 1.09004 * 117.49958 * 145.01827 * 4 2 1 33 33 H 1.08998 * 117.49881 * 214.97739 * 9 7 5 34 34 H 1.09005 * 117.50170 * 359.97438 * 9 7 5 35 35 H 1.09004 * 109.47065 * 300.00236 * 15 14 12 36 36 H 1.08995 * 109.47152 * 60.00071 * 15 14 12 37 37 H 0.96997 * 120.00395 * 180.02562 * 20 19 17 38 38 H 1.09006 * 113.86830 * 337.33515 * 25 16 15 39 39 H 1.08997 * 113.86881 * 109.04900 * 25 16 15 40 40 H 1.09004 * 113.86171 * 221.76978 * 27 26 25 41 41 H 1.08993 * 113.86448 * 90.06446 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9835 0.0000 4 6 2.2365 -1.1206 -0.7655 5 6 2.2365 -1.1212 0.7645 6 1 3.1716 -0.8756 1.2678 7 6 1.3589 -2.1564 1.4711 8 1 0.4736 -2.4759 0.9213 9 6 2.0597 -3.1964 2.3476 10 6 1.2518 -2.0697 2.9949 11 1 0.2958 -2.3320 3.4479 12 6 2.0192 -0.9716 3.6850 13 8 2.6073 -0.1428 3.0315 14 8 2.0493 -0.9142 5.0258 15 6 2.8077 0.1709 5.6222 16 6 2.7270 0.0716 7.1468 17 6 3.1760 -1.2667 7.6744 18 1 2.4700 -1.9158 8.1711 19 6 4.4880 -1.6625 7.5229 20 7 5.3698 -0.8334 7.0085 21 14 5.0132 -3.3764 8.0484 22 1 4.2426 -4.3874 7.2808 23 1 6.4634 -3.5532 7.7822 24 1 4.7509 -3.5513 9.4996 25 6 1.3853 0.5522 7.7312 26 8 2.1902 1.2117 8.7332 27 6 3.3526 1.2718 7.8822 28 1 -0.3633 -0.8836 -0.5246 29 1 -0.3633 -0.0126 1.0277 30 1 -0.3634 0.8962 -0.5029 31 1 1.6112 -1.8581 -1.2687 32 1 3.1716 -0.8746 -1.2687 33 1 1.6351 -4.1999 2.3749 34 1 3.1460 -3.1433 2.4206 35 1 3.8493 0.1016 5.3085 36 1 2.3932 1.1252 5.2975 37 1 6.2927 -1.1119 6.9016 38 1 0.8414 1.2378 7.0813 39 1 0.7619 -0.2513 8.1233 40 1 4.2862 1.0377 8.3939 41 1 3.4107 2.1774 7.2785 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001515952851.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:16 Heat of formation + Delta-G solvation = -49.012901 kcal Electronic energy + Delta-G solvation = -22579.655318 eV Core-core repulsion = 19234.881477 eV Total energy + Delta-G solvation = -3344.773841 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.17991 -39.22020 -38.12759 -35.85056 -35.07894 -32.90042 -29.96886 -28.49409 -25.94878 -25.36647 -24.80382 -23.67933 -23.23486 -21.21422 -20.15905 -19.18943 -18.82825 -17.03907 -16.33756 -15.98514 -15.63033 -15.37436 -14.90919 -14.57067 -14.35139 -14.29595 -13.98966 -13.41768 -13.12188 -12.69237 -12.49426 -12.38663 -12.05172 -11.87190 -11.54329 -11.42367 -11.24337 -10.99585 -10.97310 -10.80356 -10.62389 -10.45215 -9.97253 -9.89571 -9.71088 -9.46503 -9.38625 -9.14999 -9.03162 -8.74734 -8.30956 -6.17389 -4.20243 2.69973 3.27524 3.28429 3.31762 3.34943 3.68626 4.22421 4.33650 4.47927 4.80279 4.87592 4.90386 5.07314 5.18087 5.21216 5.28083 5.35563 5.43263 5.46330 5.75101 5.77384 5.82414 5.86193 5.93601 6.06536 6.06876 6.08925 6.14527 6.18987 6.31331 6.36187 6.39569 6.52256 6.60693 6.99285 7.13820 7.26930 7.35951 7.43465 7.78453 8.18447 8.56312 8.76440 9.43400 10.91000 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018860 B = 0.005147 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.237872 B = 5438.568912 C = 6254.572109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.145 4.145 3 H 0.100 0.900 4 C -0.185 4.185 5 C -0.107 4.107 6 H 0.124 0.876 7 C -0.090 4.090 8 H 0.112 0.888 9 C -0.145 4.145 10 C -0.157 4.157 11 H 0.132 0.868 12 C 0.481 3.519 13 O -0.514 6.514 14 O -0.328 6.328 15 C 0.084 3.916 16 C 0.033 3.967 17 C -0.485 4.485 18 H 0.065 0.935 19 C 0.067 3.933 20 N -0.890 5.890 21 Si 0.898 3.102 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.028 3.972 26 O -0.389 6.389 27 C 0.051 3.949 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.035 0.965 37 H 0.265 0.735 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.462 -2.023 -12.222 14.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.163 4.163 3 H 0.118 0.882 4 C -0.222 4.222 5 C -0.125 4.125 6 H 0.142 0.858 7 C -0.108 4.108 8 H 0.130 0.870 9 C -0.182 4.182 10 C -0.176 4.176 11 H 0.149 0.851 12 C 0.325 3.675 13 O -0.404 6.404 14 O -0.243 6.243 15 C 0.010 3.990 16 C 0.032 3.968 17 C -0.522 4.522 18 H 0.083 0.917 19 C -0.136 4.136 20 N -0.528 5.528 21 Si 0.725 3.275 22 H -0.200 1.200 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.049 4.049 26 O -0.308 6.308 27 C -0.027 4.027 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.119 -1.660 -12.133 14.165 hybrid contribution 0.501 -0.768 0.077 0.920 sum -6.618 -2.428 -12.056 13.966 Atomic orbital electron populations 1.21312 0.93313 1.01184 1.01739 1.22206 0.94969 0.94587 1.04507 0.88162 1.23159 1.02431 1.01823 0.94815 1.22011 1.01340 0.97373 0.91770 0.85809 1.21845 1.00548 0.98757 0.89633 0.86968 1.23054 1.00026 0.93982 1.01137 1.21770 1.01954 0.98751 0.95168 0.85053 1.22417 0.78450 0.84412 0.82256 1.90568 1.43185 1.40358 1.66330 1.86521 1.66659 1.51412 1.19669 1.23426 0.95919 0.84050 0.95590 1.21095 0.90362 0.96655 0.88658 1.20514 0.94837 0.99623 1.37220 0.91686 1.24945 0.96334 0.97558 0.94740 1.69870 1.03251 1.35113 1.44547 0.86548 0.77367 0.84330 0.79217 1.20018 1.21256 1.20047 1.24128 0.96060 0.94707 0.89964 1.89529 1.25428 1.81518 1.34363 1.23904 0.90894 0.95935 0.91921 0.92892 0.92207 0.92689 0.89246 0.89191 0.87440 0.87962 0.89590 0.94647 0.92536 0.92857 0.90359 0.88360 0.93507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.08 37.16 0.34 -0.93 16 2 C -0.14 -1.81 6.41 -90.62 -0.58 -2.39 16 3 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 4 C -0.19 -2.08 9.90 -26.73 -0.26 -2.35 16 5 C -0.11 -1.47 4.17 -90.62 -0.38 -1.85 16 6 H 0.12 2.07 6.25 -51.93 -0.32 1.75 16 7 C -0.09 -1.11 4.99 -90.61 -0.45 -1.57 16 8 H 0.11 1.14 7.58 -51.93 -0.39 0.75 16 9 C -0.14 -1.85 9.95 -26.73 -0.27 -2.11 16 10 C -0.16 -2.30 6.30 -91.77 -0.58 -2.88 16 11 H 0.13 1.65 8.14 -51.93 -0.42 1.23 16 12 C 0.48 9.32 7.71 36.01 0.28 9.60 16 13 O -0.51 -10.68 12.96 -18.75 -0.24 -10.93 16 14 O -0.33 -7.25 9.87 -39.27 -0.39 -7.63 16 15 C 0.08 1.95 4.64 37.16 0.17 2.12 16 16 C 0.03 0.80 0.60 -154.58 -0.09 0.70 16 17 C -0.48 -12.82 7.96 -34.44 -0.27 -13.09 16 18 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 19 C 0.07 1.76 5.25 -17.82 -0.09 1.67 16 20 N -0.89 -24.11 11.29 55.43 0.63 -23.48 16 21 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 C 0.03 0.62 8.36 37.64 0.31 0.93 16 26 O -0.39 -9.32 12.41 -35.23 -0.44 -9.76 16 27 C 0.05 1.20 7.93 37.64 0.30 1.49 16 28 H 0.05 0.49 7.67 -51.93 -0.40 0.09 16 29 H 0.06 0.69 8.03 -51.93 -0.42 0.27 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.88 8.03 -51.93 -0.42 0.46 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.09 2.23 7.08 -51.93 -0.37 1.86 16 36 H 0.04 0.77 8.08 -51.93 -0.42 0.35 16 37 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.05 1.04 8.06 -51.93 -0.42 0.62 16 39 H 0.08 1.64 8.08 -51.93 -0.42 1.22 16 40 H 0.10 2.50 7.45 -51.93 -0.39 2.11 16 41 H 0.05 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 340.02 15.07 5.12 5.12 Total: -1.00 -28.77 340.02 -8.38 -37.15 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.46 Total: 4.39 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -1.58 Total: -10.63 kcal Atomic # 7 Polarization: -24.11 SS G_CDS: 0.63 Total: -23.48 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -1.07 Total: -28.32 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.77 -8.38 -37.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515952851.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.862 kcal (2) G-P(sol) polarization free energy of solvation -28.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds