Wall clock time and date at job start Tue Mar 31 2020 01:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 115.54514 * 2 1 4 4 C 1.52999 * 117.49957 * 214.33640 * 2 1 3 5 5 C 1.52996 * 117.50180 * 145.71248 * 2 1 3 6 6 H 1.09000 * 117.49720 * 214.97707 * 5 2 1 7 7 C 1.53006 * 117.49782 * 359.97438 * 5 2 1 8 8 H 1.08998 * 115.54809 * 40.18495 * 7 5 2 9 9 C 1.52999 * 117.49654 * 185.85117 * 7 5 2 10 10 C 1.53005 * 117.49866 * 254.47407 * 7 5 2 11 11 H 1.08991 * 117.49572 * 145.01732 * 10 7 5 12 12 C 1.50700 * 117.49683 * 359.97438 * 10 7 5 13 13 O 1.20827 * 120.00361 * 5.41861 * 12 10 7 14 14 O 1.34234 * 119.99793 * 185.40997 * 12 10 7 15 15 C 1.45199 * 116.99877 * 180.02562 * 14 12 10 16 16 C 1.53001 * 109.46997 * 180.02562 * 15 14 12 17 17 C 1.50694 * 113.00195 * 55.25988 * 16 15 14 18 18 H 1.08004 * 120.00231 * 245.03922 * 17 16 15 19 19 C 1.37875 * 120.00037 * 65.04331 * 17 16 15 20 20 N 1.31510 * 120.00106 * 5.07116 * 19 17 16 21 21 Si 1.86798 * 120.00251 * 185.07072 * 19 17 16 22 22 H 1.48508 * 109.47143 * 59.99869 * 21 19 17 23 23 H 1.48502 * 109.47535 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47309 * 300.00198 * 21 19 17 25 25 C 1.54036 * 113.81058 * 283.43849 * 16 15 14 26 26 O 1.44448 * 85.42501 * 223.23652 * 25 16 15 27 27 C 1.44183 * 93.37818 * 24.08947 * 26 25 16 28 28 H 1.08992 * 109.47262 * 149.30436 * 1 2 3 29 29 H 1.09004 * 109.46688 * 269.29984 * 1 2 3 30 30 H 1.09000 * 109.47367 * 29.30101 * 1 2 3 31 31 H 1.08997 * 117.49498 * 359.97438 * 4 2 1 32 32 H 1.09004 * 117.49958 * 145.01827 * 4 2 1 33 33 H 1.08998 * 117.49881 * 214.97739 * 9 7 5 34 34 H 1.09005 * 117.50170 * 359.97438 * 9 7 5 35 35 H 1.09004 * 109.47065 * 300.00236 * 15 14 12 36 36 H 1.08995 * 109.47152 * 60.00071 * 15 14 12 37 37 H 0.96997 * 120.00395 * 180.02562 * 20 19 17 38 38 H 1.09006 * 113.86830 * 337.33515 * 25 16 15 39 39 H 1.08997 * 113.86881 * 109.04900 * 25 16 15 40 40 H 1.09004 * 113.86171 * 221.76978 * 27 26 25 41 41 H 1.08993 * 113.86448 * 90.06446 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9835 0.0000 4 6 2.2365 -1.1206 -0.7655 5 6 2.2365 -1.1212 0.7645 6 1 3.1716 -0.8756 1.2678 7 6 1.3589 -2.1564 1.4711 8 1 0.4736 -2.4759 0.9213 9 6 2.0597 -3.1964 2.3476 10 6 1.2518 -2.0697 2.9949 11 1 0.2958 -2.3320 3.4479 12 6 2.0192 -0.9716 3.6850 13 8 2.6073 -0.1428 3.0315 14 8 2.0493 -0.9142 5.0258 15 6 2.8077 0.1709 5.6222 16 6 2.7270 0.0716 7.1468 17 6 3.1760 -1.2667 7.6744 18 1 2.4700 -1.9158 8.1711 19 6 4.4880 -1.6625 7.5229 20 7 5.3698 -0.8334 7.0085 21 14 5.0132 -3.3764 8.0484 22 1 4.2426 -4.3874 7.2808 23 1 6.4634 -3.5532 7.7822 24 1 4.7509 -3.5513 9.4996 25 6 1.3853 0.5522 7.7312 26 8 2.1902 1.2117 8.7332 27 6 3.3526 1.2718 7.8822 28 1 -0.3633 -0.8836 -0.5246 29 1 -0.3633 -0.0126 1.0277 30 1 -0.3634 0.8962 -0.5029 31 1 1.6112 -1.8581 -1.2687 32 1 3.1716 -0.8746 -1.2687 33 1 1.6351 -4.1999 2.3749 34 1 3.1460 -3.1433 2.4206 35 1 3.8493 0.1016 5.3085 36 1 2.3932 1.1252 5.2975 37 1 6.2927 -1.1119 6.9016 38 1 0.8414 1.2378 7.0813 39 1 0.7619 -0.2513 8.1233 40 1 4.2862 1.0377 8.3939 41 1 3.4107 2.1774 7.2785 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515952851.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:15 Heat of formation + Delta-G solvation = -63.906067 kcal Electronic energy + Delta-G solvation = -22580.301134 eV Core-core repulsion = 19234.881477 eV Total energy + Delta-G solvation = -3345.419657 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.67361 -40.95780 -39.36879 -37.27354 -36.33785 -34.88911 -31.86600 -29.35960 -27.67373 -27.18563 -26.61464 -25.02765 -24.46120 -22.14874 -21.48139 -20.92337 -20.19154 -18.60070 -18.11713 -17.42774 -17.11711 -16.90964 -16.61918 -16.20265 -16.16258 -15.92718 -15.29492 -14.67677 -14.30915 -13.98561 -13.89309 -13.78606 -13.56888 -13.38252 -13.08304 -12.84055 -12.65892 -12.37215 -12.31690 -12.21973 -12.05370 -11.77515 -11.63266 -11.60976 -11.28478 -11.07234 -10.92857 -10.70007 -10.58005 -10.26172 -10.17564 -8.19132 -6.27635 1.25136 1.42242 1.42862 1.50092 1.87115 2.40402 2.58198 2.98815 3.20931 3.21263 3.46147 3.75474 3.80087 3.92625 4.12258 4.18623 4.26502 4.29116 4.38707 4.39449 4.43663 4.47377 4.51114 4.58028 4.74579 4.82956 4.92219 4.94670 4.99521 5.01867 5.14796 5.20098 5.21031 5.24829 5.43250 5.44481 5.48065 5.49837 5.71527 5.81915 6.22136 6.70735 6.97947 7.38277 8.87745 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018860 B = 0.005147 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.237872 B = 5438.568912 C = 6254.572109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.153 4.153 3 H 0.082 0.918 4 C -0.161 4.161 5 C -0.133 4.133 6 H 0.083 0.917 7 C -0.069 4.069 8 H 0.149 0.851 9 C -0.139 4.139 10 C -0.176 4.176 11 H 0.157 0.843 12 C 0.471 3.529 13 O -0.536 6.536 14 O -0.343 6.343 15 C 0.098 3.902 16 C 0.016 3.984 17 C -0.499 4.499 18 H 0.059 0.941 19 C 0.024 3.976 20 N -0.912 5.912 21 Si 0.952 3.048 22 H -0.269 1.269 23 H -0.286 1.286 24 H -0.271 1.271 25 C 0.038 3.962 26 O -0.403 6.403 27 C 0.054 3.946 28 H 0.075 0.925 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.143 0.857 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.448 -3.547 -13.688 17.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.171 4.171 3 H 0.100 0.900 4 C -0.197 4.197 5 C -0.152 4.152 6 H 0.101 0.899 7 C -0.086 4.086 8 H 0.166 0.834 9 C -0.176 4.176 10 C -0.194 4.194 11 H 0.174 0.826 12 C 0.316 3.684 13 O -0.427 6.427 14 O -0.258 6.258 15 C 0.023 3.977 16 C 0.016 3.984 17 C -0.537 4.537 18 H 0.077 0.923 19 C -0.176 4.176 20 N -0.550 5.550 21 Si 0.777 3.223 22 H -0.194 1.194 23 H -0.211 1.211 24 H -0.196 1.196 25 C -0.038 4.038 26 O -0.323 6.323 27 C -0.023 4.023 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.134 0.866 32 H 0.110 0.890 33 H 0.161 0.839 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.115 -3.183 -13.604 16.682 hybrid contribution 1.154 -0.238 0.481 1.273 sum -7.961 -3.421 -13.123 15.725 Atomic orbital electron populations 1.21307 0.91514 1.02778 1.01534 1.22288 0.96379 0.93848 1.04615 0.89989 1.23228 1.02597 1.01109 0.92790 1.21886 1.00502 0.99177 0.93594 0.89935 1.21990 1.01075 0.97484 0.88095 0.83371 1.23201 0.98855 0.95297 1.00281 1.21957 1.02622 0.98220 0.96620 0.82568 1.23454 0.78318 0.85354 0.81232 1.90571 1.44221 1.41573 1.66321 1.86521 1.66605 1.51088 1.21575 1.23047 0.94278 0.85090 0.95244 1.21175 0.92159 0.95975 0.89122 1.20746 0.94956 1.00699 1.37265 0.92322 1.25613 0.96454 1.00623 0.94912 1.69981 1.03245 1.36420 1.45387 0.85698 0.76962 0.80657 0.78955 1.19389 1.21120 1.19637 1.24220 0.95089 0.95176 0.89306 1.89499 1.25711 1.81800 1.35259 1.23810 0.89987 0.96771 0.91702 0.90659 0.93237 0.91810 0.86624 0.89044 0.83932 0.90231 0.93068 0.93663 0.92794 0.90108 0.89555 0.90774 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 9.08 71.98 0.65 -1.49 16 2 C -0.15 -3.65 6.41 -10.80 -0.07 -3.72 16 3 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 4 C -0.16 -3.24 9.90 30.59 0.30 -2.94 16 5 C -0.13 -3.56 4.17 -10.79 -0.04 -3.60 16 6 H 0.08 2.90 6.25 -2.39 -0.01 2.89 16 7 C -0.07 -1.53 4.99 -10.79 -0.05 -1.58 16 8 H 0.15 2.28 7.58 -2.39 -0.02 2.26 16 9 C -0.14 -3.26 9.95 30.60 0.30 -2.96 16 10 C -0.18 -4.84 6.30 -11.54 -0.07 -4.92 16 11 H 0.16 3.49 8.14 -2.39 -0.02 3.47 16 12 C 0.47 18.44 7.71 71.24 0.55 18.99 16 13 O -0.54 -23.08 12.96 21.96 0.28 -22.80 16 14 O -0.34 -15.30 9.87 -51.46 -0.51 -15.81 16 15 C 0.10 4.64 4.64 71.98 0.33 4.98 16 16 C 0.02 0.79 0.60 -52.23 -0.03 0.76 16 17 C -0.50 -26.67 7.96 25.60 0.20 -26.47 16 18 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 19 C 0.02 1.28 5.25 84.65 0.44 1.73 16 20 N -0.91 -50.72 11.29 21.45 0.24 -50.48 16 21 Si 0.95 42.86 29.54 68.60 2.03 44.88 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 25 C 0.04 1.63 8.36 72.30 0.60 2.24 16 26 O -0.40 -19.11 12.41 -148.98 -1.85 -20.96 16 27 C 0.05 2.60 7.93 72.30 0.57 3.17 16 28 H 0.07 1.07 7.67 -2.39 -0.02 1.05 16 29 H 0.05 1.03 8.03 -2.38 -0.02 1.01 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.12 1.76 8.03 -2.39 -0.02 1.74 16 32 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.14 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 35 H 0.05 2.77 7.08 -2.39 -0.02 2.75 16 36 H 0.05 2.00 8.08 -2.39 -0.02 1.98 16 37 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 38 H 0.08 2.98 8.06 -2.38 -0.02 2.96 16 39 H 0.09 3.50 8.08 -2.39 -0.02 3.48 16 40 H 0.07 3.88 7.45 -2.39 -0.02 3.86 16 41 H 0.07 2.89 8.10 -2.39 -0.02 2.87 16 Total: -1.00 -63.83 340.02 4.90 -58.93 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 1.01 Total: 22.04 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 3.70 Total: -15.81 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.24 Total: -50.48 kcal Atomic # 8 Polarization: -57.50 SS G_CDS: -2.07 Total: -59.57 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -63.83 4.90 -58.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515952851.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.976 kcal (2) G-P(sol) polarization free energy of solvation -63.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds