Wall clock time and date at job start Tue Mar 31 2020 01:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99592 * 2 1 4 4 H 1.48503 * 109.47250 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47664 * 300.00348 * 3 2 1 6 6 H 1.48504 * 109.47206 * 60.00479 * 3 2 1 7 7 C 1.37871 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99904 * 185.20787 * 7 2 1 9 9 C 1.50703 * 120.00249 * 5.20502 * 7 2 1 10 10 C 1.52998 * 112.99548 * 65.16300 * 9 7 2 11 11 O 1.45207 * 109.47459 * 62.81315 * 10 9 7 12 12 C 1.34226 * 117.00214 * 179.97438 * 11 10 9 13 13 O 1.20829 * 119.99756 * 359.97438 * 12 11 10 14 14 C 1.50695 * 120.00196 * 179.97438 * 12 11 10 15 15 H 1.09001 * 115.60932 * 34.09317 * 14 12 11 16 16 C 1.52306 * 117.54263 * 179.97438 * 14 12 11 17 17 H 1.09000 * 115.91204 * 0.84986 * 16 14 12 18 18 C 1.52067 * 119.23143 * 217.43858 * 16 14 12 19 19 C 1.52293 * 110.83075 * 309.46156 * 18 16 14 20 20 C 1.53308 * 109.02873 * 306.12135 * 19 18 16 21 21 C 1.52882 * 108.57674 * 74.00135 * 20 19 18 22 22 C 1.52062 * 60.63721 * 107.37695 * 16 14 12 23 23 H 1.09001 * 117.25903 * 253.96902 * 22 16 14 24 24 C 1.54036 * 113.81669 * 196.98505 * 9 7 2 25 25 O 1.44452 * 85.42328 * 91.81196 * 24 9 7 26 26 C 1.44177 * 93.37985 * 24.08751 * 25 24 9 27 27 H 0.96996 * 120.00282 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47321 * 302.81539 * 10 9 7 29 29 H 1.09003 * 109.46949 * 182.81196 * 10 9 7 30 30 H 1.09010 * 109.26880 * 69.75159 * 18 16 14 31 31 H 1.08998 * 109.26883 * 189.21632 * 18 16 14 32 32 H 1.09001 * 109.76203 * 186.04182 * 19 18 16 33 33 H 1.09002 * 109.18580 * 65.85629 * 19 18 16 34 34 H 1.08995 * 109.61660 * 314.27879 * 20 19 18 35 35 H 1.08996 * 109.76959 * 193.81542 * 20 19 18 36 36 H 1.09006 * 109.35416 * 185.26593 * 21 20 19 37 37 H 1.08993 * 109.24480 * 65.62145 * 21 20 19 38 38 H 1.08996 * 113.86564 * 205.91714 * 24 9 7 39 39 H 1.08996 * 113.86375 * 337.62447 * 24 9 7 40 40 H 1.08996 * 113.86499 * 221.77197 * 26 25 24 41 41 H 1.08998 * 113.86623 * 90.06008 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0812 -1.1959 0.0844 9 6 1.2558 -2.4964 -0.1195 10 6 0.5480 -2.6580 -1.4662 11 8 1.5341 -2.6802 -2.5319 12 6 1.0739 -2.8176 -3.7853 13 8 -0.1136 -2.9165 -3.9854 14 6 2.0382 -2.8485 -4.9429 15 1 3.0006 -3.3193 -4.7420 16 6 1.4554 -3.0071 -6.3410 17 1 0.3689 -3.0729 -6.3995 18 6 2.1976 -3.8535 -7.3633 19 6 3.6610 -3.4404 -7.4484 20 6 3.7401 -1.9329 -7.7156 21 6 3.3777 -1.1906 -6.4292 22 6 2.0180 -1.6598 -5.9162 23 1 1.3029 -0.8673 -5.6954 24 6 2.0792 -3.7280 0.3022 25 8 1.5106 -3.5152 1.6129 26 6 0.3626 -2.8136 1.0947 27 1 -0.4850 0.8400 0.0004 28 1 -0.1348 -1.8225 -1.6205 29 1 -0.0138 -3.5921 -1.4716 30 1 2.1389 -4.9025 -7.0726 31 1 1.7336 -3.7254 -8.3413 32 1 4.1503 -3.9818 -8.2581 33 1 4.1538 -3.6710 -6.5038 34 1 3.0373 -1.6636 -8.5040 35 1 4.7519 -1.6651 -8.0200 36 1 3.3386 -0.1197 -6.6289 37 1 4.1374 -1.3895 -5.6734 38 1 1.7592 -4.6558 -0.1720 39 1 3.1573 -3.5741 0.2574 40 1 0.0823 -1.9360 1.6771 41 1 -0.4827 -3.4615 0.8630 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001515973096.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:03 Heat of formation + Delta-G solvation = -92.172216 kcal Electronic energy + Delta-G solvation = -22552.013342 eV Core-core repulsion = 19205.367973 eV Total energy + Delta-G solvation = -3346.645369 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.43724 -39.34835 -38.53990 -35.63635 -33.19780 -32.91675 -30.92524 -29.95609 -26.28641 -25.38227 -25.02796 -24.06339 -22.67475 -22.28286 -19.87811 -19.01253 -18.32065 -17.40276 -16.57656 -15.93002 -15.56263 -15.24387 -14.84022 -14.45989 -14.35663 -14.17187 -14.09649 -13.98126 -13.75870 -12.67704 -12.51251 -12.38327 -12.13844 -11.95447 -11.81945 -11.52528 -11.26104 -11.02172 -10.97488 -10.76179 -10.46999 -10.44559 -10.15534 -9.96393 -9.86682 -9.77626 -9.48108 -9.35442 -9.06834 -8.75161 -8.31701 -6.18684 -4.21861 2.63184 3.23728 3.29388 3.32152 3.36766 3.82256 4.32635 4.59707 4.63446 4.64451 4.86291 4.88486 4.96669 5.13328 5.17175 5.25798 5.39373 5.45291 5.47455 5.57858 5.79546 5.82946 5.90178 5.97256 6.04371 6.07642 6.12585 6.15157 6.18104 6.21546 6.30849 6.31516 6.39595 6.58220 6.97985 7.15372 7.27622 7.36336 7.38941 7.77841 8.17992 8.50632 8.76004 9.42081 10.89590 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017808 B = 0.005164 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.911964 B = 5420.534771 C = 6242.585465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.485 4.485 8 H 0.067 0.933 9 C 0.032 3.968 10 C 0.081 3.919 11 O -0.331 6.331 12 C 0.482 3.518 13 O -0.526 6.526 14 C -0.165 4.165 15 H 0.131 0.869 16 C -0.108 4.108 17 H 0.114 0.886 18 C -0.088 4.088 19 C -0.125 4.125 20 C -0.118 4.118 21 C -0.092 4.092 22 C -0.113 4.113 23 H 0.109 0.891 24 C 0.030 3.970 25 O -0.390 6.390 26 C 0.051 3.949 27 H 0.264 0.736 28 H 0.088 0.912 29 H 0.036 0.964 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.349 -4.803 -14.124 15.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.726 3.274 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.523 4.523 8 H 0.085 0.915 9 C 0.032 3.968 10 C 0.007 3.993 11 O -0.245 6.245 12 C 0.325 3.675 13 O -0.416 6.416 14 C -0.184 4.184 15 H 0.149 0.851 16 C -0.126 4.126 17 H 0.132 0.868 18 C -0.125 4.125 19 C -0.163 4.163 20 C -0.155 4.155 21 C -0.130 4.130 22 C -0.131 4.131 23 H 0.127 0.873 24 C -0.047 4.047 25 O -0.309 6.309 26 C -0.026 4.026 27 H 0.074 0.926 28 H 0.106 0.894 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.926 -4.764 -13.840 15.443 hybrid contribution 0.005 0.937 0.020 0.937 sum 4.931 -3.827 -13.820 15.164 Atomic orbital electron populations 1.69892 1.05927 1.27138 1.49757 1.24974 0.94958 0.99384 0.94438 0.86418 0.80264 0.83112 0.77608 1.19496 1.20932 1.20892 1.20633 0.93289 0.88292 1.50057 0.91518 1.21106 0.92592 0.94650 0.88483 1.23506 0.90209 1.00157 0.85378 1.86483 1.42086 1.81171 1.14782 1.22500 0.87696 0.72596 0.84660 1.90592 1.18067 1.46899 1.86092 1.21992 1.00798 1.07527 0.88057 0.85128 1.21983 1.00679 0.97408 0.92545 0.86826 1.20771 0.94980 0.98854 0.97895 1.21547 0.96461 0.96249 1.02025 1.21560 1.01286 0.95124 0.97566 1.21106 0.94394 1.00059 0.97394 1.22395 0.99582 0.91458 0.99679 0.87333 1.24076 0.99465 0.97399 0.83736 1.89527 1.37436 1.77823 1.26076 1.23898 0.88181 0.94425 0.96093 0.92589 0.89374 0.94573 0.91227 0.91068 0.91686 0.91636 0.91676 0.91770 0.91092 0.90859 0.92840 0.90333 0.88318 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.30 11.22 55.43 0.62 -23.68 16 2 C 0.06 1.73 5.24 -17.82 -0.09 1.64 16 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.91 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.49 -12.95 8.13 -34.44 -0.28 -13.23 16 8 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.03 0.79 0.56 -154.58 -0.09 0.70 16 10 C 0.08 1.93 4.63 37.16 0.17 2.10 16 11 O -0.33 -7.40 10.01 -39.25 -0.39 -7.79 16 12 C 0.48 9.65 7.75 36.00 0.28 9.93 16 13 O -0.53 -11.70 15.94 -18.75 -0.30 -12.00 16 14 C -0.16 -2.47 5.41 -91.79 -0.50 -2.97 16 15 H 0.13 1.76 7.27 -51.93 -0.38 1.38 16 16 C -0.11 -1.36 5.60 -91.93 -0.51 -1.87 16 17 H 0.11 1.58 7.56 -51.93 -0.39 1.19 16 18 C -0.09 -0.83 5.90 -27.57 -0.16 -1.00 16 19 C -0.13 -1.08 5.67 -26.93 -0.15 -1.23 16 20 C -0.12 -1.02 5.93 -26.63 -0.16 -1.18 16 21 C -0.09 -0.98 5.83 -26.94 -0.16 -1.14 16 22 C -0.11 -1.49 5.90 -90.91 -0.54 -2.02 16 23 H 0.11 1.58 8.14 -51.93 -0.42 1.15 16 24 C 0.03 0.66 8.34 37.64 0.31 0.98 16 25 O -0.39 -9.38 12.41 -35.23 -0.44 -9.82 16 26 C 0.05 1.22 7.92 37.64 0.30 1.52 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.09 2.35 6.96 -51.93 -0.36 1.98 16 29 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 30 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.60 7.12 -51.93 -0.37 0.23 16 34 H 0.06 0.55 8.06 -51.93 -0.42 0.13 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.80 8.06 -51.93 -0.42 0.38 16 38 H 0.05 1.06 8.10 -51.93 -0.42 0.64 16 39 H 0.08 1.66 8.08 -51.93 -0.42 1.24 16 40 H 0.10 2.53 7.43 -51.93 -0.39 2.14 16 41 H 0.05 1.03 8.09 -51.93 -0.42 0.61 16 LS Contribution 333.06 15.07 5.02 5.02 Total: -1.00 -29.52 333.06 -8.57 -38.09 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.49 Total: 2.03 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -1.58 Total: -7.77 kcal Atomic # 7 Polarization: -24.30 SS G_CDS: 0.62 Total: -23.68 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -1.13 Total: -29.61 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.52 -8.57 -38.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515973096.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.078 kcal (2) G-P(sol) polarization free energy of solvation -29.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds