Wall clock time and date at job start Tue Mar 31 2020 01:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99592 * 2 1 4 4 H 1.48503 * 109.47250 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47664 * 300.00348 * 3 2 1 6 6 H 1.48504 * 109.47206 * 60.00479 * 3 2 1 7 7 C 1.37871 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99904 * 185.20787 * 7 2 1 9 9 C 1.50703 * 120.00249 * 5.20502 * 7 2 1 10 10 C 1.52998 * 112.99548 * 65.16300 * 9 7 2 11 11 O 1.45207 * 109.47459 * 62.81315 * 10 9 7 12 12 C 1.34226 * 117.00214 * 179.97438 * 11 10 9 13 13 O 1.20829 * 119.99756 * 359.97438 * 12 11 10 14 14 C 1.50695 * 120.00196 * 179.97438 * 12 11 10 15 15 H 1.09001 * 115.60932 * 34.09317 * 14 12 11 16 16 C 1.52306 * 117.54263 * 179.97438 * 14 12 11 17 17 H 1.09000 * 115.91204 * 0.84986 * 16 14 12 18 18 C 1.52067 * 119.23143 * 217.43858 * 16 14 12 19 19 C 1.52293 * 110.83075 * 309.46156 * 18 16 14 20 20 C 1.53308 * 109.02873 * 306.12135 * 19 18 16 21 21 C 1.52882 * 108.57674 * 74.00135 * 20 19 18 22 22 C 1.52062 * 60.63721 * 107.37695 * 16 14 12 23 23 H 1.09001 * 117.25903 * 253.96902 * 22 16 14 24 24 C 1.54036 * 113.81669 * 196.98505 * 9 7 2 25 25 O 1.44452 * 85.42328 * 91.81196 * 24 9 7 26 26 C 1.44177 * 93.37985 * 24.08751 * 25 24 9 27 27 H 0.96996 * 120.00282 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47321 * 302.81539 * 10 9 7 29 29 H 1.09003 * 109.46949 * 182.81196 * 10 9 7 30 30 H 1.09010 * 109.26880 * 69.75159 * 18 16 14 31 31 H 1.08998 * 109.26883 * 189.21632 * 18 16 14 32 32 H 1.09001 * 109.76203 * 186.04182 * 19 18 16 33 33 H 1.09002 * 109.18580 * 65.85629 * 19 18 16 34 34 H 1.08995 * 109.61660 * 314.27879 * 20 19 18 35 35 H 1.08996 * 109.76959 * 193.81542 * 20 19 18 36 36 H 1.09006 * 109.35416 * 185.26593 * 21 20 19 37 37 H 1.08993 * 109.24480 * 65.62145 * 21 20 19 38 38 H 1.08996 * 113.86564 * 205.91714 * 24 9 7 39 39 H 1.08996 * 113.86375 * 337.62447 * 24 9 7 40 40 H 1.08996 * 113.86499 * 221.77197 * 26 25 24 41 41 H 1.08998 * 113.86623 * 90.06008 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0812 -1.1959 0.0844 9 6 1.2558 -2.4964 -0.1195 10 6 0.5480 -2.6580 -1.4662 11 8 1.5341 -2.6802 -2.5319 12 6 1.0739 -2.8176 -3.7853 13 8 -0.1136 -2.9165 -3.9854 14 6 2.0382 -2.8485 -4.9429 15 1 3.0006 -3.3193 -4.7420 16 6 1.4554 -3.0071 -6.3410 17 1 0.3689 -3.0729 -6.3995 18 6 2.1976 -3.8535 -7.3633 19 6 3.6610 -3.4404 -7.4484 20 6 3.7401 -1.9329 -7.7156 21 6 3.3777 -1.1906 -6.4292 22 6 2.0180 -1.6598 -5.9162 23 1 1.3029 -0.8673 -5.6954 24 6 2.0792 -3.7280 0.3022 25 8 1.5106 -3.5152 1.6129 26 6 0.3626 -2.8136 1.0947 27 1 -0.4850 0.8400 0.0004 28 1 -0.1348 -1.8225 -1.6205 29 1 -0.0138 -3.5921 -1.4716 30 1 2.1389 -4.9025 -7.0726 31 1 1.7336 -3.7254 -8.3413 32 1 4.1503 -3.9818 -8.2581 33 1 4.1538 -3.6710 -6.5038 34 1 3.0373 -1.6636 -8.5040 35 1 4.7519 -1.6651 -8.0200 36 1 3.3386 -0.1197 -6.6289 37 1 4.1374 -1.3895 -5.6734 38 1 1.7592 -4.6558 -0.1720 39 1 3.1573 -3.5741 0.2574 40 1 0.0823 -1.9360 1.6771 41 1 -0.4827 -3.4615 0.8630 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515973096.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:02 Heat of formation + Delta-G solvation = -107.843994 kcal Electronic energy + Delta-G solvation = -22552.692922 eV Core-core repulsion = 19205.367973 eV Total energy + Delta-G solvation = -3347.324949 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.85171 -41.06286 -39.93540 -37.34500 -34.93764 -34.10761 -31.88132 -31.72210 -27.84724 -27.21326 -26.80524 -25.62241 -23.56380 -23.42076 -21.26499 -20.90237 -19.30468 -18.85148 -18.38909 -17.61937 -17.32933 -16.79578 -16.49103 -16.21920 -16.09248 -15.63742 -15.02644 -14.90311 -14.85892 -14.38353 -14.03554 -13.79671 -13.57685 -13.27485 -13.09690 -12.90311 -12.74569 -12.63299 -12.38777 -12.08106 -11.91381 -11.81116 -11.75270 -11.36226 -11.27727 -11.16919 -10.97423 -10.81672 -10.74041 -10.69575 -10.24480 -8.22172 -6.31137 1.10080 1.37621 1.40614 1.51523 1.77837 2.37922 2.67265 2.96412 3.18939 3.55094 3.58558 3.67643 3.91364 3.97461 4.15873 4.18348 4.22650 4.33492 4.36977 4.42948 4.43475 4.55700 4.60816 4.67351 4.72630 4.83795 4.92989 5.05889 5.09991 5.12450 5.19529 5.24639 5.33245 5.34119 5.43483 5.43881 5.48011 5.55780 5.66426 5.69616 6.19348 6.68561 6.83716 7.35150 8.85038 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017808 B = 0.005164 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.911964 B = 5420.534771 C = 6242.585465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.022 3.978 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.016 3.984 10 C 0.093 3.907 11 O -0.341 6.341 12 C 0.475 3.525 13 O -0.555 6.555 14 C -0.180 4.180 15 H 0.150 0.850 16 C -0.091 4.091 17 H 0.096 0.904 18 C -0.085 4.085 19 C -0.124 4.124 20 C -0.114 4.114 21 C -0.091 4.091 22 C -0.109 4.109 23 H 0.087 0.913 24 C 0.040 3.960 25 O -0.403 6.403 26 C 0.055 3.945 27 H 0.264 0.736 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.098 -5.372 -15.950 18.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.178 4.178 3 Si 0.779 3.221 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.015 3.985 10 C 0.019 3.981 11 O -0.256 6.256 12 C 0.321 3.679 13 O -0.447 6.447 14 C -0.199 4.199 15 H 0.168 0.832 16 C -0.109 4.109 17 H 0.114 0.886 18 C -0.122 4.122 19 C -0.162 4.162 20 C -0.151 4.151 21 C -0.129 4.129 22 C -0.127 4.127 23 H 0.105 0.895 24 C -0.036 4.036 25 O -0.322 6.322 26 C -0.022 4.022 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.688 -5.342 -15.670 17.856 hybrid contribution -0.584 1.105 0.564 1.372 sum 6.104 -4.237 -15.106 16.834 Atomic orbital electron populations 1.69992 1.06979 1.27663 1.50347 1.25649 0.95689 1.02219 0.94249 0.85561 0.79413 0.79606 0.77522 1.18828 1.20834 1.20520 1.20852 0.93149 0.89667 1.50166 0.92225 1.21190 0.93374 0.95106 0.88823 1.23163 0.89942 0.99103 0.85906 1.86489 1.41811 1.81626 1.15631 1.23503 0.88360 0.71232 0.84783 1.90567 1.19640 1.48257 1.86261 1.22139 1.00666 1.10000 0.87047 0.83247 1.22093 1.00114 0.97277 0.91410 0.88615 1.20840 0.95544 0.98421 0.97393 1.21570 0.95574 0.96350 1.02667 1.21561 1.02389 0.94876 0.96280 1.21159 0.92435 1.00752 0.98515 1.22535 1.00776 0.90872 0.98547 0.89461 1.24165 0.99659 0.97350 0.82415 1.89499 1.37617 1.77827 1.27245 1.23808 0.88840 0.94132 0.95396 0.92684 0.92846 0.93577 0.90528 0.89347 0.89510 0.92125 0.91142 0.90061 0.90516 0.90965 0.90125 0.89537 0.90652 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.89 11.22 21.45 0.24 -50.65 16 2 C 0.02 1.18 5.24 84.65 0.44 1.62 16 3 Si 0.95 43.16 29.54 68.60 2.03 45.19 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.50 -26.97 8.13 25.60 0.21 -26.76 16 8 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 9 C 0.02 0.77 0.56 -52.23 -0.03 0.74 16 10 C 0.09 4.50 4.63 71.98 0.33 4.83 16 11 O -0.34 -15.40 10.01 -51.38 -0.51 -15.91 16 12 C 0.48 19.31 7.75 71.23 0.55 19.86 16 13 O -0.55 -25.36 15.94 21.96 0.35 -25.01 16 14 C -0.18 -5.28 5.41 -11.55 -0.06 -5.35 16 15 H 0.15 3.79 7.27 -2.39 -0.02 3.77 16 16 C -0.09 -2.18 5.60 -11.64 -0.07 -2.24 16 17 H 0.10 2.66 7.56 -2.39 -0.02 2.64 16 18 C -0.08 -1.37 5.90 30.05 0.18 -1.19 16 19 C -0.12 -1.69 5.67 30.46 0.17 -1.52 16 20 C -0.11 -1.59 5.93 30.66 0.18 -1.40 16 21 C -0.09 -1.76 5.83 30.46 0.18 -1.58 16 22 C -0.11 -2.79 5.90 -10.98 -0.06 -2.85 16 23 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 24 C 0.04 1.73 8.34 72.30 0.60 2.34 16 25 O -0.40 -19.11 12.41 -148.98 -1.85 -20.96 16 26 C 0.06 2.65 7.92 72.30 0.57 3.23 16 27 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 28 H 0.05 2.94 6.96 -2.39 -0.02 2.93 16 29 H 0.05 2.09 8.12 -2.39 -0.02 2.07 16 30 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 0.90 7.12 -2.39 -0.02 0.89 16 34 H 0.07 0.93 8.06 -2.39 -0.02 0.91 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.07 1.42 8.06 -2.39 -0.02 1.40 16 38 H 0.08 3.01 8.10 -2.39 -0.02 2.99 16 39 H 0.09 3.54 8.08 -2.39 -0.02 3.52 16 40 H 0.08 3.95 7.43 -2.39 -0.02 3.93 16 41 H 0.07 2.93 8.09 -2.39 -0.02 2.91 16 Total: -1.00 -64.13 333.06 4.46 -59.66 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 1.01 Total: 17.94 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 3.20 Total: -10.27 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.24 Total: -50.65 kcal Atomic # 8 Polarization: -59.87 SS G_CDS: -2.01 Total: -61.88 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -64.13 4.46 -59.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515973096.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.181 kcal (2) G-P(sol) polarization free energy of solvation -64.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds