Wall clock time and date at job start Tue Mar 31 2020 01:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47239 * 2 1 4 4 C 1.52994 * 109.47297 * 176.45654 * 3 2 1 5 5 H 1.09005 * 109.47239 * 54.17346 * 4 3 2 6 6 C 1.52995 * 109.47310 * 294.16758 * 4 3 2 7 7 C 1.53001 * 109.47353 * 173.71417 * 6 4 3 8 8 C 1.50704 * 109.47255 * 174.16742 * 4 3 2 9 9 O 1.20824 * 119.99814 * 359.97438 * 8 4 3 10 10 O 1.34230 * 120.00055 * 179.72510 * 8 4 3 11 11 C 1.45203 * 116.99794 * 180.27415 * 10 8 4 12 12 H 1.09003 * 109.47255 * 330.00382 * 11 10 8 13 13 C 1.50699 * 109.46948 * 209.99817 * 11 10 8 14 14 H 1.07996 * 119.99723 * 0.02562 * 13 11 10 15 15 C 1.37875 * 119.99549 * 180.02562 * 13 11 10 16 16 N 1.31511 * 120.00186 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99748 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46989 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47461 * 119.99815 * 17 15 13 20 20 H 1.48504 * 109.46945 * 239.99926 * 17 15 13 21 21 C 1.50705 * 109.46816 * 89.99947 * 11 10 8 22 22 C 1.34515 * 125.78937 * 219.71446 * 21 11 10 23 23 C 1.41376 * 106.83999 * 179.89294 * 22 21 11 24 24 C 1.34516 * 106.84271 * 0.36794 * 23 22 21 25 25 O 1.34302 * 108.41934 * 359.77699 * 24 23 22 26 26 H 1.08993 * 109.47132 * 300.00213 * 1 2 3 27 27 H 1.09002 * 109.47037 * 60.00753 * 1 2 3 28 28 H 1.09000 * 109.46856 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47394 * 239.99751 * 2 1 3 30 30 H 1.09001 * 109.47217 * 120.00193 * 2 1 3 31 31 H 1.09001 * 109.46699 * 56.45372 * 3 2 1 32 32 H 1.09010 * 109.46804 * 296.45772 * 3 2 1 33 33 H 1.08999 * 109.47195 * 293.71785 * 6 4 3 34 34 H 1.09005 * 109.47019 * 53.71917 * 6 4 3 35 35 H 1.08993 * 109.47460 * 307.47993 * 7 6 4 36 36 H 1.09001 * 109.46934 * 67.47892 * 7 6 4 37 37 H 1.08994 * 109.47207 * 187.47528 * 7 6 4 38 38 H 0.97003 * 120.00009 * 180.02562 * 16 15 13 39 39 H 1.08004 * 126.57656 * 0.02563 * 22 21 11 40 40 H 1.08000 * 126.57850 * 180.16637 * 23 22 21 41 41 H 1.07998 * 125.79521 * 179.74843 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5674 1.4435 0.0892 5 1 3.9783 0.8251 -0.7089 6 6 3.9995 0.8805 1.4445 7 6 5.5223 0.7349 1.4743 8 6 4.0781 2.8540 -0.0548 9 8 3.3003 3.7649 -0.2130 10 8 5.3968 3.0989 -0.0023 11 6 5.8165 4.4819 -0.1423 12 1 5.1029 5.0165 -0.7693 13 6 7.1810 4.5306 -0.7802 14 1 7.6823 3.6139 -1.0535 15 6 7.7891 5.7455 -1.0149 16 7 7.1783 6.8618 -0.6826 17 14 9.4801 5.8060 -1.8063 18 1 9.9471 4.4237 -2.0827 19 1 9.4041 6.5670 -3.0792 20 1 10.4339 6.4754 -0.8856 21 6 5.8742 5.1294 1.2173 22 6 5.4842 6.3834 1.5086 23 6 5.7098 6.5716 2.8915 24 6 6.2318 5.4242 3.3610 25 8 6.3291 4.5542 2.3425 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6257 1.9743 0.8565 32 1 1.7294 1.9377 -0.9201 33 1 3.6838 1.5588 2.2371 34 1 3.5382 -0.0954 1.5964 35 1 5.8499 0.1654 0.6046 36 1 5.9821 1.7229 1.4559 37 1 5.8196 0.2126 2.3836 38 1 7.6060 7.7165 -0.8481 39 1 5.0750 7.1067 0.8189 40 1 5.5055 7.4662 3.4610 41 1 6.5236 5.2348 4.3834 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518000534.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:58 Heat of formation + Delta-G solvation = -99.112345 kcal Electronic energy + Delta-G solvation = -22869.801466 eV Core-core repulsion = 19522.855150 eV Total energy + Delta-G solvation = -3346.946316 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.33906 -39.80208 -36.65955 -35.46629 -33.39710 -32.88542 -31.69973 -29.64258 -28.94854 -26.68675 -24.82403 -23.14902 -22.33101 -21.19687 -20.52572 -19.70783 -19.08164 -17.12585 -16.64718 -16.63220 -15.47293 -15.29428 -14.99476 -14.67471 -14.45517 -14.07525 -13.71566 -13.16968 -12.99312 -12.78509 -12.64361 -12.02636 -11.97069 -11.74213 -11.56065 -11.52682 -11.36655 -11.18979 -11.08001 -10.99064 -10.89939 -10.67600 -10.57519 -10.35374 -10.28136 -9.94915 -9.50662 -9.36068 -8.81531 -8.64563 -7.24590 -6.20864 -4.38622 2.87903 2.97021 3.20598 3.27048 3.31353 3.55291 3.96394 4.19631 4.28316 4.80089 4.92194 5.01198 5.08629 5.14922 5.30222 5.37386 5.61182 5.67533 5.77533 5.82685 5.83831 5.87918 5.93692 6.00414 6.07622 6.13481 6.23346 6.30543 6.37719 6.39551 6.48717 6.75512 6.87912 7.00008 7.16495 7.24338 7.42817 7.70662 7.71241 7.88366 8.37618 8.55117 8.81553 9.28460 10.77866 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018423 B = 0.005423 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.451044 B = 5162.244839 C = 5700.800546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.083 4.083 5 H 0.103 0.897 6 C -0.111 4.111 7 C -0.162 4.162 8 C 0.456 3.544 9 O -0.518 6.518 10 O -0.342 6.342 11 C 0.294 3.706 12 H 0.077 0.923 13 C -0.529 4.529 14 H 0.078 0.922 15 C 0.069 3.931 16 N -0.868 5.868 17 Si 0.912 3.088 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.281 1.281 21 C 0.029 3.971 22 C -0.180 4.180 23 C -0.217 4.217 24 C -0.089 4.089 25 O -0.176 6.176 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.268 0.732 39 H 0.140 0.860 40 H 0.130 0.870 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.040 -10.281 3.975 13.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.143 4.143 4 C -0.102 4.102 5 H 0.121 0.879 6 C -0.149 4.149 7 C -0.219 4.219 8 C 0.299 3.701 9 O -0.407 6.407 10 O -0.257 6.257 11 C 0.241 3.759 12 H 0.094 0.906 13 C -0.566 4.566 14 H 0.096 0.904 15 C -0.136 4.136 16 N -0.502 5.502 17 Si 0.739 3.261 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.207 1.207 21 C -0.022 4.022 22 C -0.200 4.200 23 C -0.237 4.237 24 C -0.157 4.157 25 O -0.073 6.073 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.158 0.842 40 H 0.148 0.852 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -7.101 -10.054 3.935 12.922 hybrid contribution 0.956 0.837 -0.198 1.286 sum -6.144 -9.217 3.737 11.691 Atomic orbital electron populations 1.21758 0.95871 1.01280 1.01991 1.21603 0.95843 0.96618 1.02189 1.21494 0.92392 0.96716 1.03667 1.21160 0.96629 0.91635 1.00801 0.87936 1.21510 0.97642 1.00826 0.94912 1.21957 0.94780 1.04308 1.00838 1.23519 0.82225 0.91646 0.72682 1.90601 1.57546 1.47044 1.45519 1.86599 1.23463 1.34592 1.81093 1.19163 0.97319 0.73907 0.85502 0.90584 1.20931 1.00971 0.93969 1.40763 0.90407 1.24942 0.98709 0.94993 0.95005 1.70044 1.38017 0.97729 1.44439 0.86206 0.82606 0.78528 0.78794 1.19278 1.20581 1.20705 1.23544 0.97412 0.94592 0.86690 1.21210 1.07479 0.97169 0.94102 1.21684 1.07166 0.98807 0.96040 1.23583 1.08843 0.90658 0.92607 1.83981 1.65690 1.41014 1.16574 0.92723 0.92701 0.92939 0.91932 0.91597 0.91229 0.90937 0.91809 0.90941 0.92744 0.89710 0.93284 0.92260 0.84194 0.85221 0.79954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.13 -1.25 5.79 -26.73 -0.15 -1.41 16 3 C -0.11 -1.38 4.04 -26.73 -0.11 -1.49 16 4 C -0.08 -1.24 2.30 -91.78 -0.21 -1.45 16 5 H 0.10 1.37 8.12 -51.93 -0.42 0.95 16 6 C -0.11 -1.50 5.28 -26.73 -0.14 -1.64 16 7 C -0.16 -2.37 9.35 37.16 0.35 -2.02 16 8 C 0.46 9.38 7.21 36.01 0.26 9.64 16 9 O -0.52 -12.05 15.12 -18.75 -0.28 -12.33 16 10 O -0.34 -7.87 7.18 -41.28 -0.30 -8.17 16 11 C 0.29 7.75 2.42 -29.03 -0.07 7.68 16 12 H 0.08 2.17 7.15 -51.93 -0.37 1.80 16 13 C -0.53 -14.51 8.89 -34.44 -0.31 -14.82 16 14 H 0.08 2.10 7.81 -52.49 -0.41 1.69 16 15 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 16 N -0.87 -24.03 10.92 55.43 0.61 -23.42 16 17 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 C 0.03 0.74 5.54 -35.62 -0.20 0.54 16 22 C -0.18 -4.51 9.16 -39.70 -0.36 -4.88 16 23 C -0.22 -4.68 10.91 -39.70 -0.43 -5.11 16 24 C -0.09 -1.84 12.09 29.42 0.36 -1.49 16 25 O -0.18 -4.28 10.65 4.48 0.05 -4.23 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.61 6.32 -51.93 -0.33 0.28 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.03 7.93 -51.92 -0.41 0.62 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.77 6.26 -51.93 -0.33 0.45 16 35 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 36 H 0.08 1.56 5.96 -51.93 -0.31 1.25 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.14 3.61 7.85 -52.48 -0.41 3.20 16 40 H 0.13 2.37 8.06 -52.49 -0.42 1.95 16 41 H 0.18 2.85 8.06 -52.49 -0.42 2.43 16 LS Contribution 339.84 15.07 5.12 5.12 Total: -1.00 -30.33 339.84 -6.93 -37.26 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.35 Total: 5.58 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -0.75 Total: -15.68 kcal Atomic # 7 Polarization: -24.03 SS G_CDS: 0.61 Total: -23.42 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.53 Total: -24.72 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.33 -6.93 -37.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518000534.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.854 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds