Wall clock time and date at job start Tue Mar 31 2020 01:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47239 * 2 1 4 4 C 1.52994 * 109.47297 * 176.45654 * 3 2 1 5 5 H 1.09005 * 109.47239 * 54.17346 * 4 3 2 6 6 C 1.52995 * 109.47310 * 294.16758 * 4 3 2 7 7 C 1.53001 * 109.47353 * 173.71417 * 6 4 3 8 8 C 1.50704 * 109.47255 * 174.16742 * 4 3 2 9 9 O 1.20824 * 119.99814 * 359.97438 * 8 4 3 10 10 O 1.34230 * 120.00055 * 179.72510 * 8 4 3 11 11 C 1.45203 * 116.99794 * 180.27415 * 10 8 4 12 12 H 1.09003 * 109.47255 * 330.00382 * 11 10 8 13 13 C 1.50699 * 109.46948 * 209.99817 * 11 10 8 14 14 H 1.07996 * 119.99723 * 0.02562 * 13 11 10 15 15 C 1.37875 * 119.99549 * 180.02562 * 13 11 10 16 16 N 1.31511 * 120.00186 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99748 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46989 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47461 * 119.99815 * 17 15 13 20 20 H 1.48504 * 109.46945 * 239.99926 * 17 15 13 21 21 C 1.50705 * 109.46816 * 89.99947 * 11 10 8 22 22 C 1.34515 * 125.78937 * 219.71446 * 21 11 10 23 23 C 1.41376 * 106.83999 * 179.89294 * 22 21 11 24 24 C 1.34516 * 106.84271 * 0.36794 * 23 22 21 25 25 O 1.34302 * 108.41934 * 359.77699 * 24 23 22 26 26 H 1.08993 * 109.47132 * 300.00213 * 1 2 3 27 27 H 1.09002 * 109.47037 * 60.00753 * 1 2 3 28 28 H 1.09000 * 109.46856 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47394 * 239.99751 * 2 1 3 30 30 H 1.09001 * 109.47217 * 120.00193 * 2 1 3 31 31 H 1.09001 * 109.46699 * 56.45372 * 3 2 1 32 32 H 1.09010 * 109.46804 * 296.45772 * 3 2 1 33 33 H 1.08999 * 109.47195 * 293.71785 * 6 4 3 34 34 H 1.09005 * 109.47019 * 53.71917 * 6 4 3 35 35 H 1.08993 * 109.47460 * 307.47993 * 7 6 4 36 36 H 1.09001 * 109.46934 * 67.47892 * 7 6 4 37 37 H 1.08994 * 109.47207 * 187.47528 * 7 6 4 38 38 H 0.97003 * 120.00009 * 180.02562 * 16 15 13 39 39 H 1.08004 * 126.57656 * 0.02563 * 22 21 11 40 40 H 1.08000 * 126.57850 * 180.16637 * 23 22 21 41 41 H 1.07998 * 125.79521 * 179.74843 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5674 1.4435 0.0892 5 1 3.9783 0.8251 -0.7089 6 6 3.9995 0.8805 1.4445 7 6 5.5223 0.7349 1.4743 8 6 4.0781 2.8540 -0.0548 9 8 3.3003 3.7649 -0.2130 10 8 5.3968 3.0989 -0.0023 11 6 5.8165 4.4819 -0.1423 12 1 5.1029 5.0165 -0.7693 13 6 7.1810 4.5306 -0.7802 14 1 7.6823 3.6139 -1.0535 15 6 7.7891 5.7455 -1.0149 16 7 7.1783 6.8618 -0.6826 17 14 9.4801 5.8060 -1.8063 18 1 9.9471 4.4237 -2.0827 19 1 9.4041 6.5670 -3.0792 20 1 10.4339 6.4754 -0.8856 21 6 5.8742 5.1294 1.2173 22 6 5.4842 6.3834 1.5086 23 6 5.7098 6.5716 2.8915 24 6 6.2318 5.4242 3.3610 25 8 6.3291 4.5542 2.3425 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6257 1.9743 0.8565 32 1 1.7294 1.9377 -0.9201 33 1 3.6838 1.5588 2.2371 34 1 3.5382 -0.0954 1.5964 35 1 5.8499 0.1654 0.6046 36 1 5.9821 1.7229 1.4559 37 1 5.8196 0.2126 2.3836 38 1 7.6060 7.7165 -0.8481 39 1 5.0750 7.1067 0.8189 40 1 5.5055 7.4662 3.4610 41 1 6.5236 5.2348 4.3834 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518000534.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:57 Heat of formation + Delta-G solvation = -114.846402 kcal Electronic energy + Delta-G solvation = -22870.483746 eV Core-core repulsion = 19522.855150 eV Total energy + Delta-G solvation = -3347.628596 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.17731 -41.46641 -38.05698 -37.08062 -35.30368 -33.97808 -33.54798 -31.54188 -30.05146 -28.60629 -26.16201 -24.80519 -23.61724 -22.52283 -22.19825 -21.32780 -20.68691 -18.99098 -18.47777 -18.30832 -17.20347 -16.94879 -16.51137 -16.30497 -15.97169 -15.27199 -15.07163 -14.68468 -14.45660 -14.15488 -13.83140 -13.60931 -13.57000 -13.48427 -13.24376 -13.03175 -12.84620 -12.82058 -12.55106 -12.33869 -12.16792 -11.93090 -11.85413 -11.73601 -11.64306 -11.38928 -11.28699 -11.04421 -10.81402 -10.52635 -9.11913 -8.24399 -6.52939 1.09989 1.31301 1.38595 1.39975 1.52841 1.88507 2.12167 2.39816 2.42442 3.00819 3.65650 3.79132 3.85237 4.16770 4.24407 4.26255 4.35132 4.39042 4.52413 4.56041 4.61571 4.69600 4.75727 4.84282 4.92076 5.03280 5.10540 5.14307 5.16068 5.27316 5.31064 5.33874 5.41478 5.43016 5.45400 5.52656 5.64031 5.68899 5.83969 5.98484 6.48756 6.58927 6.94860 7.19663 8.72685 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018423 B = 0.005423 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.451044 B = 5162.244839 C = 5700.800546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.101 4.101 4 C -0.075 4.075 5 H 0.124 0.876 6 C -0.105 4.105 7 C -0.160 4.160 8 C 0.446 3.554 9 O -0.554 6.554 10 O -0.343 6.343 11 C 0.297 3.703 12 H 0.036 0.964 13 C -0.553 4.553 14 H 0.075 0.925 15 C 0.024 3.976 16 N -0.892 5.892 17 Si 0.980 3.020 18 H -0.261 1.261 19 H -0.272 1.272 20 H -0.277 1.277 21 C 0.002 3.998 22 C -0.198 4.198 23 C -0.228 4.228 24 C -0.070 4.070 25 O -0.191 6.191 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.115 0.885 35 H 0.063 0.937 36 H 0.041 0.959 37 H 0.069 0.931 38 H 0.270 0.730 39 H 0.119 0.881 40 H 0.164 0.836 41 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.493 -12.313 5.336 14.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.138 4.138 4 C -0.094 4.094 5 H 0.142 0.858 6 C -0.142 4.142 7 C -0.217 4.217 8 C 0.291 3.709 9 O -0.445 6.445 10 O -0.259 6.259 11 C 0.243 3.757 12 H 0.054 0.946 13 C -0.590 4.590 14 H 0.093 0.907 15 C -0.179 4.179 16 N -0.527 5.527 17 Si 0.803 3.197 18 H -0.185 1.185 19 H -0.197 1.197 20 H -0.203 1.203 21 C -0.049 4.049 22 C -0.217 4.217 23 C -0.247 4.247 24 C -0.137 4.137 25 O -0.088 6.088 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.133 0.867 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.137 0.863 40 H 0.182 0.818 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -6.570 -12.102 5.298 14.755 hybrid contribution 0.708 1.486 -0.561 1.739 sum -5.862 -10.617 4.737 13.020 Atomic orbital electron populations 1.21769 0.95207 1.02373 1.01646 1.21583 0.96380 0.93951 1.03571 1.21495 0.90971 0.99099 1.02280 1.21399 0.97647 0.87681 1.02684 0.85784 1.21537 0.97100 1.02412 0.93122 1.21918 0.95276 1.02112 1.02421 1.24853 0.81021 0.93859 0.71171 1.90575 1.57961 1.48836 1.47123 1.86629 1.25210 1.32702 1.81352 1.18703 0.96004 0.75157 0.85809 0.94619 1.21177 1.01654 0.94295 1.41855 0.90730 1.25828 1.02459 0.94415 0.95223 1.70181 1.39452 0.98145 1.44952 0.85182 0.77709 0.78857 0.77994 1.18456 1.19684 1.20307 1.23302 0.99395 0.95019 0.87179 1.21281 1.07820 0.96681 0.95965 1.22023 1.07511 1.00755 0.94417 1.24660 1.06016 0.89361 0.93654 1.83960 1.65929 1.42007 1.16879 0.92986 0.93282 0.91073 0.90711 0.89931 0.92469 0.92659 0.93128 0.86734 0.91766 0.94014 0.91188 0.92134 0.86304 0.81827 0.74421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.91 71.98 0.71 -1.72 16 2 C -0.12 -2.03 5.79 30.59 0.18 -1.85 16 3 C -0.10 -2.59 4.04 30.59 0.12 -2.47 16 4 C -0.08 -2.20 2.30 -11.54 -0.03 -2.22 16 5 H 0.12 3.12 8.12 -2.38 -0.02 3.10 16 6 C -0.10 -2.61 5.28 30.59 0.16 -2.45 16 7 C -0.16 -4.46 9.35 71.98 0.67 -3.78 16 8 C 0.45 19.15 7.21 71.24 0.51 19.66 16 9 O -0.55 -27.48 15.12 21.97 0.33 -27.15 16 10 O -0.34 -16.62 7.18 -49.47 -0.36 -16.98 16 11 C 0.30 16.60 2.42 29.10 0.07 16.67 16 12 H 0.04 2.24 7.15 -2.39 -0.02 2.22 16 13 C -0.55 -31.57 8.89 25.60 0.23 -31.34 16 14 H 0.07 4.16 7.81 -2.91 -0.02 4.14 16 15 C 0.02 1.31 5.30 84.65 0.45 1.76 16 16 N -0.89 -51.16 10.92 21.45 0.23 -50.92 16 17 Si 0.98 43.27 29.54 68.60 2.03 45.30 16 18 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 21 C 0.00 0.09 5.54 24.83 0.14 0.23 16 22 C -0.20 -10.28 9.16 22.19 0.20 -10.07 16 23 C -0.23 -9.60 10.91 22.19 0.24 -9.36 16 24 C -0.07 -2.76 12.09 66.97 0.81 -1.95 16 25 O -0.19 -9.31 10.65 -1.32 -0.01 -9.32 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.08 1.17 6.32 -2.39 -0.02 1.16 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 1.60 7.93 -2.38 -0.02 1.58 16 33 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.11 1.96 6.26 -2.38 -0.01 1.94 16 35 H 0.06 1.63 8.12 -2.39 -0.02 1.61 16 36 H 0.04 1.54 5.96 -2.39 -0.01 1.53 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 38 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 39 H 0.12 6.55 7.85 -2.91 -0.02 6.53 16 40 H 0.16 5.61 8.06 -2.91 -0.02 5.58 16 41 H 0.24 6.34 8.06 -2.91 -0.02 6.32 16 Total: -1.00 -70.54 339.84 7.70 -62.84 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 1.00 Total: 25.14 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: 4.47 Total: -28.90 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.23 Total: -50.92 kcal Atomic # 8 Polarization: -53.42 SS G_CDS: -0.04 Total: -53.46 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -70.54 7.70 -62.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518000534.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.010 kcal (2) G-P(sol) polarization free energy of solvation -70.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds