Wall clock time and date at job start Tue Mar 31 2020 01:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47028 * 2 1 4 4 C 1.53001 * 109.47543 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.46897 * 305.00549 * 4 3 2 6 6 C 1.53006 * 109.46866 * 65.00330 * 4 3 2 7 7 C 1.52996 * 109.46998 * 185.00371 * 6 4 3 8 8 C 1.50699 * 109.47626 * 185.00407 * 4 3 2 9 9 O 1.20826 * 119.99870 * 359.97438 * 8 4 3 10 10 O 1.34218 * 120.00192 * 180.02562 * 8 4 3 11 11 C 1.45202 * 117.00377 * 179.97438 * 10 8 4 12 12 H 1.09001 * 109.46505 * 329.99873 * 11 10 8 13 13 C 1.50706 * 109.47182 * 89.99319 * 11 10 8 14 14 H 1.07995 * 120.00167 * 239.72684 * 13 11 10 15 15 C 1.37879 * 119.99394 * 60.00383 * 13 11 10 16 16 N 1.31514 * 119.99350 * 179.97438 * 15 13 11 17 17 Si 1.86798 * 120.00608 * 0.02562 * 15 13 11 18 18 H 1.48500 * 109.47353 * 89.99430 * 17 15 13 19 19 H 1.48494 * 109.47031 * 209.99977 * 17 15 13 20 20 H 1.48504 * 109.46680 * 329.99678 * 17 15 13 21 21 C 1.50698 * 109.47680 * 209.99909 * 11 10 8 22 22 C 1.34506 * 125.79470 * 144.99723 * 21 11 10 23 23 C 1.41380 * 106.84518 * 179.97438 * 22 21 11 24 24 C 1.34518 * 106.83764 * 0.02562 * 23 22 21 25 25 O 1.34305 * 108.42220 * 359.73222 * 24 23 22 26 26 H 1.09000 * 109.46485 * 299.99303 * 1 2 3 27 27 H 1.08990 * 109.47478 * 59.99632 * 1 2 3 28 28 H 1.08997 * 109.46806 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47155 * 240.00706 * 2 1 3 30 30 H 1.08997 * 109.47742 * 120.00689 * 2 1 3 31 31 H 1.09005 * 109.47077 * 60.00506 * 3 2 1 32 32 H 1.09000 * 109.47850 * 300.00599 * 3 2 1 33 33 H 1.09007 * 109.46580 * 304.99790 * 6 4 3 34 34 H 1.08991 * 109.47115 * 65.00253 * 6 4 3 35 35 H 1.08998 * 109.47255 * 299.99962 * 7 6 4 36 36 H 1.09004 * 109.47523 * 59.99831 * 7 6 4 37 37 H 1.09002 * 109.47048 * 180.02562 * 7 6 4 38 38 H 0.97005 * 119.99656 * 180.02562 * 16 15 13 39 39 H 1.08002 * 126.57595 * 0.03875 * 22 21 11 40 40 H 1.07998 * 126.58318 * 179.97438 * 23 22 21 41 41 H 1.08004 * 125.78607 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0794 0.8333 -1.3084 7 6 5.6043 0.7186 -1.2576 8 6 4.0724 2.8580 0.1233 9 8 3.2872 3.7729 0.2034 10 8 5.3919 3.1024 0.1436 11 6 5.8037 4.4895 0.2646 12 1 5.0529 5.1327 -0.1945 13 6 5.9471 4.8458 1.7219 14 1 5.3499 5.6399 2.1450 15 6 6.8450 4.1615 2.5136 16 7 6.9705 4.4728 3.7852 17 14 7.8841 2.7936 1.7799 18 1 9.1544 3.3610 1.2606 19 1 8.1841 1.7841 2.8268 20 1 7.1395 2.1482 0.6688 21 6 7.1256 4.6839 -0.4325 22 6 7.5068 5.7857 -1.1032 23 6 8.8099 5.5374 -1.5922 24 6 9.1469 4.2983 -1.1914 25 8 8.1251 3.7882 -0.4847 26 1 -0.3632 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6766 1.9565 -0.8899 33 1 3.6448 -0.1575 -1.4411 34 1 3.7907 1.4716 -2.1433 35 1 6.0389 1.7093 -1.1248 36 1 5.8931 0.0803 -0.4225 37 1 5.9672 0.2849 -2.1894 38 1 7.6024 3.9916 4.3422 39 1 6.9287 6.6875 -1.2409 40 1 9.4178 6.2126 -2.1761 41 1 10.0826 3.8002 -1.3985 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518000535.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:00 Heat of formation + Delta-G solvation = -82.851023 kcal Electronic energy + Delta-G solvation = -23218.698286 eV Core-core repulsion = 19872.457114 eV Total energy + Delta-G solvation = -3346.241172 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.95152 -39.74400 -36.65241 -35.42651 -33.26575 -32.72086 -32.34729 -30.45655 -28.94403 -26.89362 -24.76906 -23.06755 -22.34888 -21.40106 -20.89815 -19.83628 -19.39211 -17.65977 -17.02107 -16.32918 -16.00517 -15.57009 -15.16509 -14.78717 -14.25770 -14.03835 -13.78462 -13.25979 -13.08906 -12.95188 -12.67842 -12.46099 -12.32354 -11.97861 -11.80066 -11.58758 -11.43755 -11.38871 -11.04188 -10.88745 -10.65196 -10.57629 -10.52130 -10.23105 -10.16152 -9.61963 -9.33422 -9.18276 -9.00611 -8.67750 -7.68657 -6.33445 -4.47239 2.41301 3.08003 3.17413 3.23701 3.42856 3.49116 3.77945 4.12482 4.39134 4.85771 4.95508 5.00346 5.06941 5.17240 5.29715 5.38116 5.52461 5.62512 5.64284 5.68126 5.80091 5.85045 5.87525 5.96534 6.00295 6.10505 6.18791 6.19619 6.28103 6.33905 6.42123 6.45433 6.51266 6.58697 6.80183 6.89839 7.11968 7.23716 7.53704 7.85445 8.16513 8.63410 8.78320 9.25922 10.73509 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019430 B = 0.006280 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.727116 B = 4457.277764 C = 4839.683694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.104 4.104 4 C -0.088 4.088 5 H 0.102 0.898 6 C -0.110 4.110 7 C -0.168 4.168 8 C 0.464 3.536 9 O -0.519 6.519 10 O -0.350 6.350 11 C 0.247 3.753 12 H 0.089 0.911 13 C -0.535 4.535 14 H 0.089 0.911 15 C 0.087 3.913 16 N -0.869 5.869 17 Si 0.883 3.117 18 H -0.275 1.275 19 H -0.300 1.300 20 H -0.211 1.211 21 C 0.036 3.964 22 C -0.230 4.230 23 C -0.205 4.205 24 C -0.076 4.076 25 O -0.163 6.163 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.270 0.730 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.350 -8.467 -10.585 13.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.141 4.141 4 C -0.107 4.107 5 H 0.120 0.880 6 C -0.148 4.148 7 C -0.225 4.225 8 C 0.307 3.693 9 O -0.408 6.408 10 O -0.267 6.267 11 C 0.195 3.805 12 H 0.106 0.894 13 C -0.571 4.571 14 H 0.107 0.893 15 C -0.121 4.121 16 N -0.503 5.503 17 Si 0.716 3.284 18 H -0.203 1.203 19 H -0.229 1.229 20 H -0.136 1.136 21 C -0.015 4.015 22 C -0.249 4.249 23 C -0.224 4.224 24 C -0.143 4.143 25 O -0.061 6.061 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.160 0.840 40 H 0.157 0.843 41 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -3.481 -8.447 -10.253 13.733 hybrid contribution 0.913 -0.176 -0.057 0.931 sum -2.568 -8.623 -10.310 13.684 Atomic orbital electron populations 1.21755 0.95897 1.01231 1.01975 1.21600 0.95810 0.96751 1.02116 1.21477 0.92393 0.96598 1.03674 1.21206 0.96518 0.92051 1.00920 0.88045 1.21495 0.97070 1.00668 0.95534 1.22120 0.94995 1.04680 1.00729 1.23247 0.82162 0.91412 0.72431 1.90558 1.57205 1.46952 1.46116 1.86966 1.23659 1.34503 1.81553 1.19250 0.85593 0.79383 0.96290 0.89354 1.21092 1.24292 1.21326 0.90350 0.89328 1.25203 0.95714 0.96625 0.94609 1.69936 1.34469 1.40031 1.05905 0.86639 0.81217 0.81708 0.78873 1.20271 1.22949 1.13609 1.23093 0.90994 0.89519 0.97882 1.21221 0.97593 1.00166 1.05966 1.21620 0.97404 0.97178 1.06229 1.23778 0.94171 0.96357 0.99976 1.84496 1.22883 1.42054 1.56660 0.92641 0.92785 0.92996 0.91754 0.91915 0.90807 0.91329 0.90985 0.91897 0.89417 0.92839 0.93394 0.92030 0.84028 0.84287 0.79567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.13 -1.35 5.70 -26.73 -0.15 -1.50 16 3 C -0.10 -1.44 4.03 -26.73 -0.11 -1.55 16 4 C -0.09 -1.39 2.32 -91.77 -0.21 -1.60 16 5 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 6 C -0.11 -1.49 5.26 -26.73 -0.14 -1.63 16 7 C -0.17 -2.52 9.49 37.16 0.35 -2.16 16 8 C 0.46 9.70 7.20 36.00 0.26 9.95 16 9 O -0.52 -12.09 15.14 -18.75 -0.28 -12.37 16 10 O -0.35 -7.91 3.97 -41.98 -0.17 -8.07 16 11 C 0.25 6.02 2.55 -29.03 -0.07 5.94 16 12 H 0.09 2.12 7.16 -51.93 -0.37 1.75 16 13 C -0.54 -15.20 9.51 -34.44 -0.33 -15.53 16 14 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 15 C 0.09 2.49 5.45 -17.82 -0.10 2.40 16 16 N -0.87 -26.26 13.96 55.43 0.77 -25.49 16 17 Si 0.88 21.98 22.92 -169.99 -3.90 18.08 16 18 H -0.27 -6.79 6.01 56.52 0.34 -6.45 16 19 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 20 H -0.21 -4.90 4.15 56.52 0.23 -4.67 16 21 C 0.04 0.81 5.34 -35.63 -0.19 0.62 16 22 C -0.23 -4.67 10.81 -39.71 -0.43 -5.09 16 23 C -0.21 -3.65 10.91 -39.70 -0.43 -4.08 16 24 C -0.08 -1.40 11.72 29.42 0.34 -1.05 16 25 O -0.16 -3.60 4.85 2.17 0.01 -3.59 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.63 6.46 -51.93 -0.34 0.29 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.13 7.96 -51.93 -0.41 0.72 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.79 6.34 -51.93 -0.33 0.46 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.59 4.76 -51.93 -0.25 1.35 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 39 H 0.14 2.59 8.06 -52.49 -0.42 2.17 16 40 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 41 H 0.19 2.62 8.06 -52.48 -0.42 2.20 16 LS Contribution 324.80 15.07 4.89 4.89 Total: -1.00 -31.91 324.80 -6.06 -37.97 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.56 Total: 4.96 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -0.84 Total: -16.38 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.77 Total: -25.49 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.44 Total: -24.04 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -3.90 Total: 18.08 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.91 -6.06 -37.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518000535.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.879 kcal (2) G-P(sol) polarization free energy of solvation -31.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds