Wall clock time and date at job start Tue Mar 31 2020 01:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47028 * 2 1 4 4 C 1.53001 * 109.47543 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.46897 * 305.00549 * 4 3 2 6 6 C 1.53006 * 109.46866 * 65.00330 * 4 3 2 7 7 C 1.52996 * 109.46998 * 185.00371 * 6 4 3 8 8 C 1.50699 * 109.47626 * 185.00407 * 4 3 2 9 9 O 1.20826 * 119.99870 * 359.97438 * 8 4 3 10 10 O 1.34218 * 120.00192 * 180.02562 * 8 4 3 11 11 C 1.45202 * 117.00377 * 179.97438 * 10 8 4 12 12 H 1.09001 * 109.46505 * 329.99873 * 11 10 8 13 13 C 1.50706 * 109.47182 * 89.99319 * 11 10 8 14 14 H 1.07995 * 120.00167 * 239.72684 * 13 11 10 15 15 C 1.37879 * 119.99394 * 60.00383 * 13 11 10 16 16 N 1.31514 * 119.99350 * 179.97438 * 15 13 11 17 17 Si 1.86798 * 120.00608 * 0.02562 * 15 13 11 18 18 H 1.48500 * 109.47353 * 89.99430 * 17 15 13 19 19 H 1.48494 * 109.47031 * 209.99977 * 17 15 13 20 20 H 1.48504 * 109.46680 * 329.99678 * 17 15 13 21 21 C 1.50698 * 109.47680 * 209.99909 * 11 10 8 22 22 C 1.34506 * 125.79470 * 144.99723 * 21 11 10 23 23 C 1.41380 * 106.84518 * 179.97438 * 22 21 11 24 24 C 1.34518 * 106.83764 * 0.02562 * 23 22 21 25 25 O 1.34305 * 108.42220 * 359.73222 * 24 23 22 26 26 H 1.09000 * 109.46485 * 299.99303 * 1 2 3 27 27 H 1.08990 * 109.47478 * 59.99632 * 1 2 3 28 28 H 1.08997 * 109.46806 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47155 * 240.00706 * 2 1 3 30 30 H 1.08997 * 109.47742 * 120.00689 * 2 1 3 31 31 H 1.09005 * 109.47077 * 60.00506 * 3 2 1 32 32 H 1.09000 * 109.47850 * 300.00599 * 3 2 1 33 33 H 1.09007 * 109.46580 * 304.99790 * 6 4 3 34 34 H 1.08991 * 109.47115 * 65.00253 * 6 4 3 35 35 H 1.08998 * 109.47255 * 299.99962 * 7 6 4 36 36 H 1.09004 * 109.47523 * 59.99831 * 7 6 4 37 37 H 1.09002 * 109.47048 * 180.02562 * 7 6 4 38 38 H 0.97005 * 119.99656 * 180.02562 * 16 15 13 39 39 H 1.08002 * 126.57595 * 0.03875 * 22 21 11 40 40 H 1.07998 * 126.58318 * 179.97438 * 23 22 21 41 41 H 1.08004 * 125.78607 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0794 0.8333 -1.3084 7 6 5.6043 0.7186 -1.2576 8 6 4.0724 2.8580 0.1233 9 8 3.2872 3.7729 0.2034 10 8 5.3919 3.1024 0.1436 11 6 5.8037 4.4895 0.2646 12 1 5.0529 5.1327 -0.1945 13 6 5.9471 4.8458 1.7219 14 1 5.3499 5.6399 2.1450 15 6 6.8450 4.1615 2.5136 16 7 6.9705 4.4728 3.7852 17 14 7.8841 2.7936 1.7799 18 1 9.1544 3.3610 1.2606 19 1 8.1841 1.7841 2.8268 20 1 7.1395 2.1482 0.6688 21 6 7.1256 4.6839 -0.4325 22 6 7.5068 5.7857 -1.1032 23 6 8.8099 5.5374 -1.5922 24 6 9.1469 4.2983 -1.1914 25 8 8.1251 3.7882 -0.4847 26 1 -0.3632 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6766 1.9565 -0.8899 33 1 3.6448 -0.1575 -1.4411 34 1 3.7907 1.4716 -2.1433 35 1 6.0389 1.7093 -1.1248 36 1 5.8931 0.0803 -0.4225 37 1 5.9672 0.2849 -2.1894 38 1 7.6024 3.9916 4.3422 39 1 6.9287 6.6875 -1.2409 40 1 9.4178 6.2126 -2.1761 41 1 10.0826 3.8002 -1.3985 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518000535.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:59 Heat of formation + Delta-G solvation = -101.652807 kcal Electronic energy + Delta-G solvation = -23219.513592 eV Core-core repulsion = 19872.457114 eV Total energy + Delta-G solvation = -3347.056479 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.53066 -41.42449 -38.08779 -37.03983 -35.10497 -34.01665 -33.91230 -32.24452 -30.05433 -28.68482 -26.11622 -24.73660 -23.63037 -22.86231 -22.15787 -21.46192 -20.84916 -19.44810 -18.76359 -18.07524 -17.71945 -17.17249 -16.65046 -16.22138 -15.80830 -15.36391 -15.16263 -14.98470 -14.58566 -14.09052 -13.99064 -13.95273 -13.72238 -13.41135 -13.36044 -13.15718 -12.80700 -12.76101 -12.53337 -12.18025 -12.05650 -11.85169 -11.81385 -11.69062 -11.53875 -11.27217 -11.14364 -11.01746 -10.77801 -10.53632 -9.29488 -8.53675 -6.73472 0.81492 1.24735 1.37418 1.49142 1.57728 1.77497 2.06767 2.33678 2.46554 2.91378 3.64628 3.75530 3.85378 4.13480 4.20873 4.22936 4.26609 4.32485 4.33850 4.50516 4.55687 4.61550 4.77485 4.84110 4.92721 4.94012 5.02591 5.06648 5.09849 5.10878 5.13902 5.26068 5.27640 5.32925 5.41088 5.51817 5.60433 5.70515 5.78039 6.00798 6.28180 6.36089 6.96383 7.08654 8.57526 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019430 B = 0.006280 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.727116 B = 4457.277764 C = 4839.683694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.100 4.100 4 C -0.083 4.083 5 H 0.109 0.891 6 C -0.103 4.103 7 C -0.169 4.169 8 C 0.452 3.548 9 O -0.552 6.552 10 O -0.346 6.346 11 C 0.258 3.742 12 H 0.077 0.923 13 C -0.552 4.552 14 H 0.040 0.960 15 C 0.039 3.961 16 N -0.919 5.919 17 Si 0.945 3.055 18 H -0.267 1.267 19 H -0.305 1.305 20 H -0.191 1.191 21 C -0.005 4.005 22 C -0.226 4.226 23 C -0.204 4.204 24 C -0.071 4.071 25 O -0.182 6.182 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.273 0.727 39 H 0.152 0.848 40 H 0.180 0.820 41 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.124 -11.008 -13.361 17.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.137 4.137 4 C -0.102 4.102 5 H 0.127 0.873 6 C -0.140 4.140 7 C -0.226 4.226 8 C 0.297 3.703 9 O -0.443 6.443 10 O -0.262 6.262 11 C 0.205 3.795 12 H 0.095 0.905 13 C -0.587 4.587 14 H 0.058 0.942 15 C -0.164 4.164 16 N -0.556 5.556 17 Si 0.774 3.226 18 H -0.195 1.195 19 H -0.234 1.234 20 H -0.115 1.115 21 C -0.055 4.055 22 C -0.245 4.245 23 C -0.223 4.223 24 C -0.137 4.137 25 O -0.080 6.080 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.128 0.872 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.170 0.830 40 H 0.197 0.803 41 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -2.273 -10.982 -13.047 17.204 hybrid contribution 0.478 0.729 0.713 1.127 sum -1.795 -10.253 -12.333 16.139 Atomic orbital electron populations 1.21762 0.95106 1.02340 1.01702 1.21583 0.96472 0.94196 1.03341 1.21475 0.90957 0.98895 1.02411 1.21419 0.97663 0.88270 1.02860 0.87280 1.21527 0.96390 1.02378 0.93693 1.22099 0.95667 1.02758 1.02121 1.24495 0.81253 0.93504 0.71047 1.90540 1.57637 1.48596 1.47535 1.86947 1.24884 1.32704 1.81713 1.18781 0.86896 0.79986 0.93857 0.90520 1.21164 1.23946 1.20513 0.93127 0.94167 1.26026 0.96765 0.98940 0.94689 1.70050 1.36054 1.42018 1.07438 0.85719 0.79855 0.78652 0.78367 1.19493 1.23439 1.11498 1.22657 0.90950 0.90980 1.00916 1.21648 0.98925 0.99506 1.04428 1.22046 0.96316 0.97770 1.06146 1.24793 0.94238 0.96700 0.97931 1.84368 1.23485 1.42463 1.57733 0.93537 0.92575 0.91155 0.89698 0.91411 0.93239 0.91607 0.87156 0.91812 0.92841 0.92615 0.91032 0.91771 0.83035 0.80300 0.75036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.91 71.98 0.71 -1.88 16 2 C -0.12 -2.23 5.70 30.59 0.17 -2.06 16 3 C -0.10 -2.67 4.03 30.59 0.12 -2.55 16 4 C -0.08 -2.53 2.32 -11.54 -0.03 -2.56 16 5 H 0.11 3.19 8.14 -2.38 -0.02 3.17 16 6 C -0.10 -2.46 5.26 30.59 0.16 -2.30 16 7 C -0.17 -4.57 9.49 71.98 0.68 -3.89 16 8 C 0.45 19.24 7.20 71.24 0.51 19.75 16 9 O -0.55 -26.92 15.14 21.96 0.33 -26.58 16 10 O -0.35 -15.85 3.97 -48.67 -0.19 -16.05 16 11 C 0.26 13.02 2.55 29.10 0.07 13.10 16 12 H 0.08 3.92 7.16 -2.39 -0.02 3.90 16 13 C -0.55 -33.17 9.51 25.60 0.24 -32.92 16 14 H 0.04 2.70 8.06 -2.91 -0.02 2.68 16 15 C 0.04 2.31 5.45 84.66 0.46 2.77 16 16 N -0.92 -58.10 13.96 21.45 0.30 -57.80 16 17 Si 0.94 46.07 22.92 68.60 1.57 47.64 16 18 H -0.27 -12.53 6.01 99.48 0.60 -11.94 16 19 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 20 H -0.19 -8.55 4.15 99.48 0.41 -8.14 16 21 C -0.01 -0.24 5.34 24.83 0.13 -0.11 16 22 C -0.23 -8.85 10.81 22.19 0.24 -8.61 16 23 C -0.20 -6.49 10.91 22.19 0.24 -6.25 16 24 C -0.07 -2.32 11.72 66.97 0.79 -1.53 16 25 O -0.18 -7.63 4.85 0.80 0.00 -7.63 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 1.27 6.46 -2.38 -0.02 1.26 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.55 7.96 -2.38 -0.02 1.53 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.11 1.87 6.34 -2.38 -0.02 1.86 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.05 1.84 4.76 -2.39 -0.01 1.83 16 36 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.27 16.06 8.31 -92.70 -0.77 15.29 16 39 H 0.15 5.45 8.06 -2.91 -0.02 5.43 16 40 H 0.18 4.17 8.06 -2.91 -0.02 4.15 16 41 H 0.23 5.17 8.06 -2.91 -0.02 5.14 16 Total: -1.00 -74.34 324.80 7.14 -67.20 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.60 Total: 22.25 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: 4.52 Total: -29.04 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: 0.30 Total: -57.80 kcal Atomic # 8 Polarization: -50.40 SS G_CDS: 0.14 Total: -50.26 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.57 Total: 47.64 kcal Total: -74.34 7.14 -67.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518000535.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.448 kcal (2) G-P(sol) polarization free energy of solvation -74.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds