Wall clock time and date at job start Tue Mar 31 2020 01:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47013 * 2 1 4 4 C 1.52993 * 109.47173 * 305.25589 * 3 2 1 5 5 C 1.52997 * 109.47524 * 294.76317 * 4 3 2 6 6 C 1.53001 * 109.47219 * 65.26170 * 3 2 1 7 7 C 1.50697 * 109.47424 * 64.99522 * 6 3 2 8 8 O 1.20828 * 119.99840 * 0.02562 * 7 6 3 9 9 O 1.34231 * 120.00031 * 180.02562 * 7 6 3 10 10 C 1.45201 * 116.99938 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47361 * 330.00279 * 10 9 7 12 12 C 1.50691 * 109.47271 * 210.00037 * 10 9 7 13 13 H 1.07999 * 120.00113 * 268.72950 * 12 10 9 14 14 C 1.37878 * 120.00380 * 88.72651 * 12 10 9 15 15 N 1.31513 * 120.00609 * 185.72844 * 14 12 10 16 16 Si 1.86802 * 119.99708 * 5.73147 * 14 12 10 17 17 H 1.48499 * 109.47328 * 85.01952 * 16 14 12 18 18 H 1.48498 * 109.47250 * 205.02728 * 16 14 12 19 19 H 1.48507 * 109.47134 * 325.02329 * 16 14 12 20 20 C 1.50701 * 109.46924 * 89.99679 * 10 9 7 21 21 C 1.34513 * 125.79376 * 216.34803 * 20 10 9 22 22 C 1.41377 * 106.84222 * 179.89616 * 21 20 10 23 23 C 1.34516 * 106.84340 * 0.36913 * 22 21 20 24 24 O 1.34297 * 108.41639 * 359.77540 * 23 22 21 25 25 H 1.08998 * 109.47342 * 185.46430 * 1 2 3 26 26 H 1.09006 * 109.47060 * 305.46221 * 1 2 3 27 27 H 1.09000 * 109.47240 * 65.45941 * 1 2 3 28 28 H 1.08995 * 109.47292 * 240.00461 * 2 1 3 29 29 H 1.08998 * 109.47435 * 119.99734 * 2 1 3 30 30 H 1.09004 * 109.46784 * 185.25478 * 3 2 1 31 31 H 1.09004 * 109.47208 * 54.76748 * 4 3 2 32 32 H 1.09007 * 109.47234 * 174.76582 * 4 3 2 33 33 H 1.08996 * 109.47135 * 185.93004 * 5 4 3 34 34 H 1.09000 * 109.47172 * 305.93144 * 5 4 3 35 35 H 1.08997 * 109.47010 * 65.92682 * 5 4 3 36 36 H 1.09002 * 109.46665 * 304.99512 * 6 3 2 37 37 H 1.09000 * 109.47036 * 184.99829 * 6 3 2 38 38 H 0.96997 * 120.00355 * 179.97438 * 15 14 12 39 39 H 1.08005 * 126.57551 * 0.02706 * 21 20 10 40 40 H 1.08007 * 126.58049 * 180.16537 * 22 21 20 41 41 H 1.07996 * 125.79096 * 179.74967 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4250 2.2009 -1.1779 5 6 1.9288 1.5989 -2.4911 6 6 1.6408 2.1246 1.3101 7 6 2.3446 1.4529 2.4610 8 8 3.0895 0.5242 2.2544 9 8 2.1441 1.8863 3.7154 10 6 2.8544 1.1917 4.7743 11 1 3.0097 0.1519 4.4864 12 6 2.0430 1.2457 6.0430 13 1 2.1923 2.0522 6.7455 14 6 1.1099 0.2656 6.3069 15 7 0.3235 0.3714 7.3557 16 14 0.9626 -1.2129 5.1746 17 1 1.9510 -2.2454 5.5774 18 1 -0.4083 -1.7755 5.2708 19 1 1.2282 -0.7929 3.7751 20 6 4.1886 1.8542 5.0027 21 6 5.3357 1.2257 5.3165 22 6 6.3303 2.2233 5.4348 23 6 5.7299 3.4028 5.1943 24 8 4.4328 3.1731 4.9331 25 1 -0.3634 -1.0230 0.0979 26 1 -0.3633 0.5963 0.8371 27 1 -0.3634 0.4268 -0.9348 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.1259 1.4439 -0.0941 31 1 0.3388 2.1205 -1.1344 32 1 1.7140 3.2506 -1.1249 33 1 1.5756 2.2030 -3.3268 34 1 3.0187 1.5833 -2.4891 35 1 1.5512 0.5816 -2.5929 36 1 0.5624 2.0449 1.4473 37 1 1.9258 3.1761 1.2738 38 1 -0.3331 -0.3180 7.5411 39 1 5.4712 0.1625 5.4502 40 1 7.3718 2.0686 5.6757 41 1 6.2095 4.3703 5.2091 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520424680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:26 Heat of formation + Delta-G solvation = -96.068020 kcal Electronic energy + Delta-G solvation = -22751.844162 eV Core-core repulsion = 19405.029858 eV Total energy + Delta-G solvation = -3346.814304 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.83454 -39.76802 -37.39621 -35.44629 -33.12512 -32.29179 -31.20893 -30.72202 -29.72528 -27.12017 -25.16988 -23.49308 -22.81311 -21.14621 -20.51404 -19.47692 -18.78501 -17.47091 -17.06835 -16.59595 -15.90062 -15.60972 -15.19148 -15.06245 -14.69393 -14.23784 -13.70858 -13.34852 -13.03308 -12.80796 -12.58573 -12.31758 -12.12923 -12.06281 -11.96965 -11.86224 -11.64210 -11.37606 -11.26757 -11.08059 -10.99111 -10.39522 -10.34500 -10.30850 -10.15878 -9.77295 -9.75280 -9.43940 -9.24536 -8.94201 -7.73879 -6.50416 -4.59113 2.43799 2.99951 3.08020 3.19499 3.25543 3.28642 3.63515 3.79449 4.11023 4.81465 4.86317 4.91814 5.07507 5.27157 5.35056 5.37545 5.46841 5.54570 5.62901 5.66037 5.71216 5.77661 5.80532 5.89874 5.92337 6.01568 6.08372 6.14901 6.22290 6.26079 6.36867 6.43788 6.51358 6.57945 6.66314 6.75243 7.08335 7.13978 7.52198 7.89350 8.06970 8.60378 8.71860 9.06731 10.58327 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.013704 B = 0.006855 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.698835 B = 4083.649944 C = 5533.561752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.129 4.129 3 C -0.074 4.074 4 C -0.122 4.122 5 C -0.150 4.150 6 C -0.121 4.121 7 C 0.448 3.552 8 O -0.525 6.525 9 O -0.354 6.354 10 C 0.254 3.746 11 H 0.079 0.921 12 C -0.508 4.508 13 H 0.089 0.911 14 C 0.093 3.907 15 N -0.857 5.857 16 Si 0.869 3.131 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.256 1.256 20 C 0.033 3.967 21 C -0.229 4.229 22 C -0.210 4.210 23 C -0.072 4.072 24 O -0.168 6.168 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.275 0.725 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.254 2.525 -13.617 14.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.166 4.166 3 C -0.093 4.093 4 C -0.160 4.160 5 C -0.208 4.208 6 C -0.158 4.158 7 C 0.292 3.708 8 O -0.416 6.416 9 O -0.271 6.271 10 C 0.203 3.797 11 H 0.096 0.904 12 C -0.544 4.544 13 H 0.107 0.893 14 C -0.116 4.116 15 N -0.491 5.491 16 Si 0.694 3.306 17 H -0.191 1.191 18 H -0.203 1.203 19 H -0.180 1.180 20 C -0.019 4.019 21 C -0.248 4.248 22 C -0.230 4.230 23 C -0.139 4.139 24 O -0.063 6.063 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 3.111 2.394 -13.564 14.120 hybrid contribution 0.193 -0.900 -0.216 0.945 sum 3.304 1.494 -13.780 14.249 Atomic orbital electron populations 1.21926 0.96520 1.01472 1.01553 1.21695 0.95441 0.96296 1.03176 1.21009 1.00950 0.95154 0.92173 1.21637 1.00973 0.99221 0.94145 1.21772 1.01204 1.00958 0.96834 1.21581 1.02119 1.00901 0.91247 1.23649 0.79476 0.81862 0.85790 1.90524 1.36705 1.28595 1.85781 1.87118 1.65343 1.59897 1.14739 1.19509 0.83423 0.91025 0.85753 0.90401 1.20803 1.21190 1.12389 0.99993 0.89320 1.25100 0.93488 0.98142 0.94914 1.69876 1.18701 1.34082 1.26487 0.86925 0.78466 0.82840 0.82396 1.19089 1.20253 1.17971 1.23303 0.97471 0.80085 1.01017 1.21375 0.92066 1.00503 1.10860 1.21668 1.00251 0.92696 1.08342 1.23831 0.82200 0.99915 1.08001 1.84073 1.26952 1.26427 1.68891 0.93132 0.92520 0.92675 0.92178 0.90043 0.90456 0.91368 0.92056 0.93078 0.92791 0.92560 0.88116 0.88440 0.91456 0.84034 0.84208 0.78992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.11 37.16 0.34 -1.67 16 2 C -0.13 -1.84 5.13 -26.73 -0.14 -1.98 16 3 C -0.07 -1.01 1.81 -90.62 -0.16 -1.18 16 4 C -0.12 -1.29 5.07 -26.74 -0.14 -1.43 16 5 C -0.15 -1.42 9.53 37.16 0.35 -1.07 16 6 C -0.12 -1.87 5.16 -27.88 -0.14 -2.02 16 7 C 0.45 9.41 7.30 36.00 0.26 9.68 16 8 O -0.53 -11.87 13.21 -18.75 -0.25 -12.12 16 9 O -0.35 -8.55 9.84 -41.82 -0.41 -8.96 16 10 C 0.25 6.45 1.88 -29.04 -0.05 6.39 16 11 H 0.08 2.00 4.65 -51.93 -0.24 1.76 16 12 C -0.51 -14.29 9.22 -34.44 -0.32 -14.61 16 13 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 14 C 0.09 2.57 5.47 -17.82 -0.10 2.47 16 15 N -0.86 -24.61 13.96 55.43 0.77 -23.84 16 16 Si 0.87 20.85 26.99 -169.99 -4.59 16.26 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.26 -6.16 6.59 56.52 0.37 -5.79 16 20 C 0.03 0.77 6.17 -35.62 -0.22 0.55 16 21 C -0.23 -4.86 10.81 -39.71 -0.43 -5.28 16 22 C -0.21 -3.77 10.91 -39.70 -0.43 -4.20 16 23 C -0.07 -1.27 12.09 29.42 0.36 -0.92 16 24 O -0.17 -3.73 10.64 2.91 0.03 -3.69 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.76 6.24 -51.93 -0.32 0.44 16 27 H 0.05 0.59 6.56 -51.93 -0.34 0.25 16 28 H 0.06 0.77 6.97 -51.93 -0.36 0.40 16 29 H 0.08 1.45 5.88 -51.93 -0.31 1.14 16 30 H 0.08 1.13 7.96 -51.93 -0.41 0.72 16 31 H 0.07 0.68 6.17 -51.93 -0.32 0.36 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.53 6.99 -51.93 -0.36 0.17 16 36 H 0.10 1.46 6.25 -51.93 -0.32 1.13 16 37 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.14 2.80 8.06 -52.48 -0.42 2.38 16 40 H 0.14 2.01 8.06 -52.48 -0.42 1.58 16 41 H 0.19 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 334.04 15.07 5.03 5.03 Total: -1.00 -31.07 334.04 -6.20 -37.26 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -5.96 Total: 5.32 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -0.82 Total: -15.26 kcal Atomic # 7 Polarization: -24.61 SS G_CDS: 0.77 Total: -23.84 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.63 Total: -24.77 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.59 Total: 16.26 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.07 -6.20 -37.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520424680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.807 kcal (2) G-P(sol) polarization free energy of solvation -31.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds