Wall clock time and date at job start Tue Mar 31 2020 01:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.46950 * 119.99731 * 2 1 4 4 O 1.21532 * 119.99893 * 174.97035 * 3 2 1 5 5 O 1.34800 * 119.99868 * 354.97144 * 3 2 1 6 6 C 1.45205 * 116.99777 * 185.06389 * 5 3 2 7 7 C 1.52991 * 109.46948 * 175.12227 * 6 5 3 8 8 C 1.50703 * 113.00229 * 293.48674 * 7 6 5 9 9 H 1.07998 * 120.00140 * 114.75381 * 8 7 6 10 10 C 1.37878 * 120.00152 * 294.76374 * 8 7 6 11 11 N 1.31519 * 119.99802 * 358.56025 * 10 8 7 12 12 Si 1.86795 * 120.00278 * 178.56754 * 10 8 7 13 13 H 1.48507 * 109.46879 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47526 * 119.99538 * 12 10 8 15 15 H 1.48508 * 109.47218 * 239.99894 * 12 10 8 16 16 C 1.54035 * 113.81805 * 161.50705 * 7 6 5 17 17 O 1.44178 * 85.52145 * 223.19436 * 16 7 6 18 18 C 1.44182 * 93.33692 * 24.18756 * 17 16 7 19 19 C 1.33082 * 120.00090 * 180.28103 * 2 1 3 20 20 C 1.51442 * 126.34107 * 179.40812 * 19 2 1 21 21 C 1.54276 * 106.85156 * 180.24165 * 20 19 2 22 22 C 1.54984 * 103.66084 * 23.48622 * 21 20 19 23 23 C 1.51849 * 126.34008 * 359.72038 * 19 2 1 24 24 H 1.09007 * 109.47059 * 274.22882 * 1 2 3 25 25 H 1.08998 * 109.47742 * 34.23289 * 1 2 3 26 26 H 1.08999 * 109.46994 * 154.23720 * 1 2 3 27 27 H 1.09002 * 109.47283 * 295.12330 * 6 5 3 28 28 H 1.09000 * 109.46775 * 55.11832 * 6 5 3 29 29 H 0.97000 * 119.99544 * 185.01047 * 11 10 8 30 30 H 1.09003 * 113.86101 * 337.33901 * 16 7 6 31 31 H 1.08999 * 113.87095 * 109.04304 * 16 7 6 32 32 H 1.09001 * 113.86598 * 221.66233 * 18 17 16 33 33 H 1.08997 * 113.98179 * 89.97407 * 18 17 16 34 34 H 1.08999 * 109.98459 * 299.73021 * 20 19 2 35 35 H 1.09005 * 109.98329 * 61.02945 * 20 19 2 36 36 H 1.08996 * 110.79537 * 264.85983 * 21 20 19 37 37 H 1.09006 * 110.43036 * 141.93069 * 21 20 19 38 38 H 1.09005 * 110.83133 * 204.48945 * 22 21 20 39 39 H 1.08998 * 110.83264 * 80.90926 * 22 21 20 40 40 H 1.08997 * 110.44001 * 274.92610 * 23 19 2 41 41 H 1.08996 * 110.43845 * 37.32956 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2417 1.2727 0.0000 4 8 3.4535 1.2747 0.0923 5 8 1.5715 2.4378 -0.1023 6 6 2.3664 3.6482 -0.2096 7 6 1.4427 4.8462 -0.4378 8 6 0.7378 4.8013 -1.7691 9 1 -0.3363 4.6955 -1.8081 10 6 1.4642 4.8949 -2.9373 11 7 2.7691 5.0519 -2.8894 12 14 0.5949 4.7989 -4.5879 13 1 -0.8633 4.6216 -4.3698 14 1 0.8334 6.0529 -5.3467 15 1 1.1235 3.6453 -5.3594 16 6 2.0968 6.2048 -0.1231 17 8 0.8474 6.5300 0.5189 18 6 0.5096 5.1475 0.7501 19 6 2.1724 -1.1525 -0.0057 20 6 3.6775 -1.3197 -0.0191 21 6 3.9590 -2.8366 -0.0274 22 6 2.6626 -3.4461 -0.6190 23 6 1.5631 -2.5434 -0.0065 24 1 -0.3633 0.0758 1.0249 25 1 -0.3634 0.8496 -0.5781 26 1 -0.3633 -0.9255 -0.4467 27 1 2.9311 3.7949 0.7111 28 1 3.0565 3.5564 -1.0483 29 1 3.2711 5.1906 -3.7077 30 1 2.9411 6.1393 0.5631 31 1 2.3088 6.8075 -1.0062 32 1 -0.5374 4.9115 0.5594 33 1 0.8681 4.7572 1.7025 34 1 4.0959 -0.8562 -0.9125 35 1 4.1106 -0.8675 0.8732 36 1 4.1279 -3.2044 0.9846 37 1 4.8137 -3.0615 -0.6655 38 1 2.5387 -4.4803 -0.2976 39 1 2.6618 -3.3743 -1.7066 40 1 1.3343 -2.8593 1.0113 41 1 0.6639 -2.5646 -0.6221 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526119018.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:15 Heat of formation + Delta-G solvation = -101.551231 kcal Electronic energy + Delta-G solvation = -22536.933417 eV Core-core repulsion = 19189.881343 eV Total energy + Delta-G solvation = -3347.052074 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.89725 -39.14348 -37.99650 -35.49480 -33.44547 -32.88647 -29.88488 -28.98969 -27.56102 -25.59940 -25.34128 -24.66476 -23.64969 -21.00692 -20.71812 -19.00896 -17.96388 -16.66851 -16.28251 -15.91395 -15.71498 -15.36021 -14.87442 -14.60381 -14.32717 -14.22270 -13.82076 -13.45903 -13.19627 -12.54790 -12.47325 -12.29800 -11.99105 -11.90212 -11.83881 -11.66811 -11.25945 -11.10586 -11.00155 -10.95292 -10.75366 -10.71042 -10.44216 -9.93272 -9.89986 -9.47589 -9.32750 -9.05890 -8.72804 -8.65717 -8.34250 -6.16624 -4.21714 1.46069 3.24442 3.32904 3.35725 3.37476 3.56119 4.33164 4.45479 4.58339 4.89260 4.89884 5.06846 5.18390 5.25388 5.27288 5.34915 5.48896 5.64270 5.72322 5.81932 5.84392 5.89808 5.98666 6.01011 6.11955 6.14817 6.19992 6.21474 6.29129 6.33475 6.41063 6.51328 6.62768 6.75211 7.02259 7.15826 7.29636 7.40385 7.41231 7.79320 8.19488 8.54788 8.76711 9.42677 10.90672 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018514 B = 0.004998 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.977001 B = 5600.818871 C = 6177.436053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.151 4.151 3 C 0.493 3.507 4 O -0.522 6.522 5 O -0.333 6.333 6 C 0.081 3.919 7 C 0.033 3.967 8 C -0.485 4.485 9 H 0.067 0.933 10 C 0.064 3.936 11 N -0.890 5.890 12 Si 0.898 3.102 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.284 1.284 16 C 0.051 3.949 17 O -0.389 6.389 18 C 0.031 3.969 19 C -0.049 4.049 20 C -0.093 4.093 21 C -0.128 4.128 22 C -0.124 4.124 23 C -0.095 4.095 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.034 0.966 28 H 0.092 0.908 29 H 0.265 0.735 30 H 0.048 0.952 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.069 -14.397 5.329 15.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.152 4.152 3 C 0.339 3.661 4 O -0.414 6.414 5 O -0.248 6.248 6 C 0.007 3.993 7 C 0.032 3.968 8 C -0.523 4.523 9 H 0.085 0.915 10 C -0.138 4.138 11 N -0.528 5.528 12 Si 0.726 3.274 13 H -0.195 1.195 14 H -0.209 1.209 15 H -0.210 1.210 16 C -0.026 4.026 17 O -0.308 6.308 18 C -0.046 4.046 19 C -0.050 4.050 20 C -0.130 4.130 21 C -0.165 4.165 22 C -0.162 4.162 23 C -0.132 4.132 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.053 0.947 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.691 -14.128 5.290 15.102 hybrid contribution 0.016 -0.022 -0.956 0.957 sum -0.675 -14.150 4.334 14.814 Atomic orbital electron populations 1.20689 0.89952 1.03214 1.02531 1.20185 0.96582 0.89357 1.09124 1.21172 0.85968 0.85502 0.73424 1.90769 1.15334 1.88530 1.46817 1.86549 1.41381 1.15071 1.81843 1.23514 0.94668 0.81019 1.00083 1.21093 0.91674 0.89147 0.94839 1.20667 0.93522 1.49947 0.88120 0.91509 1.24981 0.94826 0.94580 0.99408 1.69869 1.05721 1.48655 1.28553 0.86420 0.79949 0.77670 0.83372 1.19505 1.20853 1.20982 1.23887 0.85742 0.97837 0.95168 1.89486 1.36154 1.25071 1.80123 1.24004 1.00799 0.82338 0.97419 1.22699 0.96457 0.93489 0.92338 1.21297 0.92243 0.95491 1.03978 1.22458 0.97719 0.95361 1.00993 1.22533 0.94611 0.98505 1.00543 1.21542 0.98602 0.91227 1.01818 0.91357 0.89977 0.91807 0.94727 0.88998 0.92557 0.93407 0.88617 0.90403 0.92831 0.89730 0.89646 0.91463 0.91341 0.91135 0.91105 0.89597 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 9.63 36.01 0.35 -1.09 16 2 C -0.15 -2.44 6.00 -102.89 -0.62 -3.06 16 3 C 0.49 10.11 7.86 34.26 0.27 10.37 16 4 O -0.52 -11.57 13.92 -19.29 -0.27 -11.83 16 5 O -0.33 -7.44 9.34 -40.77 -0.38 -7.82 16 6 C 0.08 1.93 4.71 37.15 0.17 2.11 16 7 C 0.03 0.81 0.56 -154.58 -0.09 0.72 16 8 C -0.49 -12.91 8.21 -34.44 -0.28 -13.19 16 9 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 10 C 0.06 1.71 5.23 -17.82 -0.09 1.62 16 11 N -0.89 -24.35 11.23 55.43 0.62 -23.72 16 12 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 13 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 C 0.05 1.21 7.95 37.61 0.30 1.51 16 17 O -0.39 -9.35 12.40 -35.23 -0.44 -9.78 16 18 C 0.03 0.69 8.26 37.61 0.31 1.00 16 19 C -0.05 -0.68 6.13 -100.21 -0.61 -1.29 16 20 C -0.09 -1.28 4.82 -26.85 -0.13 -1.41 16 21 C -0.13 -1.28 6.88 -25.02 -0.17 -1.45 16 22 C -0.12 -1.11 6.94 -24.69 -0.17 -1.28 16 23 C -0.10 -0.94 6.05 -26.32 -0.16 -1.10 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.08 1.25 7.74 -51.93 -0.40 0.84 16 26 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 27 H 0.03 0.78 8.05 -51.93 -0.42 0.36 16 28 H 0.09 2.46 6.72 -51.93 -0.35 2.12 16 29 H 0.26 6.94 8.32 -40.82 -0.34 6.61 16 30 H 0.05 1.04 8.03 -51.93 -0.42 0.62 16 31 H 0.10 2.43 7.58 -51.93 -0.39 2.04 16 32 H 0.08 1.64 8.09 -51.93 -0.42 1.22 16 33 H 0.05 1.06 8.10 -51.93 -0.42 0.64 16 34 H 0.08 1.32 7.79 -51.93 -0.40 0.91 16 35 H 0.09 1.27 7.57 -51.93 -0.39 0.87 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.72 6.83 -51.93 -0.35 0.37 16 LS Contribution 334.86 15.07 5.05 5.05 Total: -1.00 -29.44 334.86 -7.75 -37.19 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.39 Total: 1.54 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -0.92 Total: -6.55 kcal Atomic # 7 Polarization: -24.35 SS G_CDS: 0.62 Total: -23.72 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -1.09 Total: -29.44 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.44 -7.75 -37.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526119018.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.362 kcal (2) G-P(sol) polarization free energy of solvation -29.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds