Wall clock time and date at job start Tue Mar 31 2020 01:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.46950 * 119.99731 * 2 1 4 4 O 1.21532 * 119.99893 * 174.97035 * 3 2 1 5 5 O 1.34800 * 119.99868 * 354.97144 * 3 2 1 6 6 C 1.45205 * 116.99777 * 185.06389 * 5 3 2 7 7 C 1.52991 * 109.46948 * 175.12227 * 6 5 3 8 8 C 1.50703 * 113.00229 * 293.48674 * 7 6 5 9 9 H 1.07998 * 120.00140 * 114.75381 * 8 7 6 10 10 C 1.37878 * 120.00152 * 294.76374 * 8 7 6 11 11 N 1.31519 * 119.99802 * 358.56025 * 10 8 7 12 12 Si 1.86795 * 120.00278 * 178.56754 * 10 8 7 13 13 H 1.48507 * 109.46879 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47526 * 119.99538 * 12 10 8 15 15 H 1.48508 * 109.47218 * 239.99894 * 12 10 8 16 16 C 1.54035 * 113.81805 * 161.50705 * 7 6 5 17 17 O 1.44178 * 85.52145 * 223.19436 * 16 7 6 18 18 C 1.44182 * 93.33692 * 24.18756 * 17 16 7 19 19 C 1.33082 * 120.00090 * 180.28103 * 2 1 3 20 20 C 1.51442 * 126.34107 * 179.40812 * 19 2 1 21 21 C 1.54276 * 106.85156 * 180.24165 * 20 19 2 22 22 C 1.54984 * 103.66084 * 23.48622 * 21 20 19 23 23 C 1.51849 * 126.34008 * 359.72038 * 19 2 1 24 24 H 1.09007 * 109.47059 * 274.22882 * 1 2 3 25 25 H 1.08998 * 109.47742 * 34.23289 * 1 2 3 26 26 H 1.08999 * 109.46994 * 154.23720 * 1 2 3 27 27 H 1.09002 * 109.47283 * 295.12330 * 6 5 3 28 28 H 1.09000 * 109.46775 * 55.11832 * 6 5 3 29 29 H 0.97000 * 119.99544 * 185.01047 * 11 10 8 30 30 H 1.09003 * 113.86101 * 337.33901 * 16 7 6 31 31 H 1.08999 * 113.87095 * 109.04304 * 16 7 6 32 32 H 1.09001 * 113.86598 * 221.66233 * 18 17 16 33 33 H 1.08997 * 113.98179 * 89.97407 * 18 17 16 34 34 H 1.08999 * 109.98459 * 299.73021 * 20 19 2 35 35 H 1.09005 * 109.98329 * 61.02945 * 20 19 2 36 36 H 1.08996 * 110.79537 * 264.85983 * 21 20 19 37 37 H 1.09006 * 110.43036 * 141.93069 * 21 20 19 38 38 H 1.09005 * 110.83133 * 204.48945 * 22 21 20 39 39 H 1.08998 * 110.83264 * 80.90926 * 22 21 20 40 40 H 1.08997 * 110.44001 * 274.92610 * 23 19 2 41 41 H 1.08996 * 110.43845 * 37.32956 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2417 1.2727 0.0000 4 8 3.4535 1.2747 0.0923 5 8 1.5715 2.4378 -0.1023 6 6 2.3664 3.6482 -0.2096 7 6 1.4427 4.8462 -0.4378 8 6 0.7378 4.8013 -1.7691 9 1 -0.3363 4.6955 -1.8081 10 6 1.4642 4.8949 -2.9373 11 7 2.7691 5.0519 -2.8894 12 14 0.5949 4.7989 -4.5879 13 1 -0.8633 4.6216 -4.3698 14 1 0.8334 6.0529 -5.3467 15 1 1.1235 3.6453 -5.3594 16 6 2.0968 6.2048 -0.1231 17 8 0.8474 6.5300 0.5189 18 6 0.5096 5.1475 0.7501 19 6 2.1724 -1.1525 -0.0057 20 6 3.6775 -1.3197 -0.0191 21 6 3.9590 -2.8366 -0.0274 22 6 2.6626 -3.4461 -0.6190 23 6 1.5631 -2.5434 -0.0065 24 1 -0.3633 0.0758 1.0249 25 1 -0.3634 0.8496 -0.5781 26 1 -0.3633 -0.9255 -0.4467 27 1 2.9311 3.7949 0.7111 28 1 3.0565 3.5564 -1.0483 29 1 3.2711 5.1906 -3.7077 30 1 2.9411 6.1393 0.5631 31 1 2.3088 6.8075 -1.0062 32 1 -0.5374 4.9115 0.5594 33 1 0.8681 4.7572 1.7025 34 1 4.0959 -0.8562 -0.9125 35 1 4.1106 -0.8675 0.8732 36 1 4.1279 -3.2044 0.9846 37 1 4.8137 -3.0615 -0.6655 38 1 2.5387 -4.4803 -0.2976 39 1 2.6618 -3.3743 -1.7066 40 1 1.3343 -2.8593 1.0113 41 1 0.6639 -2.5646 -0.6221 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526119018.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:14 Heat of formation + Delta-G solvation = -117.659313 kcal Electronic energy + Delta-G solvation = -22537.631916 eV Core-core repulsion = 19189.881343 eV Total energy + Delta-G solvation = -3347.750573 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.54907 -40.87484 -39.14570 -37.17793 -34.96622 -34.48575 -31.79895 -29.91275 -28.54557 -27.45520 -27.17304 -26.39299 -25.11645 -22.39344 -21.56948 -20.93032 -19.31919 -18.47038 -17.92236 -17.35052 -17.23236 -16.80774 -16.49888 -16.27026 -16.12666 -15.95076 -15.21496 -14.58192 -14.32522 -14.19183 -13.84912 -13.65655 -13.53177 -13.42737 -13.10385 -12.87947 -12.86084 -12.64645 -12.37979 -12.30717 -11.96934 -11.85051 -11.78304 -11.69457 -11.48222 -11.27473 -11.08351 -10.94491 -10.67523 -10.26612 -9.85771 -8.20301 -6.31229 0.17549 1.37857 1.40779 1.51689 1.83820 2.05438 2.38166 2.97049 3.20238 3.42211 3.69722 3.83806 4.09759 4.14095 4.15791 4.26109 4.32175 4.44059 4.45290 4.46854 4.57504 4.68202 4.73368 4.81738 4.86482 4.90336 4.94085 5.04583 5.10357 5.13999 5.18342 5.18992 5.21625 5.37658 5.44501 5.46043 5.50595 5.63230 5.71201 5.74245 6.20329 6.69374 6.89503 7.35504 8.85977 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018514 B = 0.004998 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.977001 B = 5600.818871 C = 6177.436053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.185 4.185 3 C 0.482 3.518 4 O -0.551 6.551 5 O -0.341 6.341 6 C 0.094 3.906 7 C 0.017 3.983 8 C -0.500 4.500 9 H 0.060 0.940 10 C 0.021 3.979 11 N -0.913 5.913 12 Si 0.954 3.046 13 H -0.264 1.264 14 H -0.278 1.278 15 H -0.285 1.285 16 C 0.055 3.945 17 O -0.401 6.401 18 C 0.042 3.958 19 C -0.029 4.029 20 C -0.103 4.103 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.092 4.092 24 H 0.081 0.919 25 H 0.057 0.943 26 H 0.094 0.906 27 H 0.042 0.958 28 H 0.056 0.944 29 H 0.264 0.736 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.111 0.889 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.397 -17.040 5.812 18.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.186 4.186 3 C 0.331 3.669 4 O -0.446 6.446 5 O -0.256 6.256 6 C 0.019 3.981 7 C 0.016 3.984 8 C -0.537 4.537 9 H 0.079 0.921 10 C -0.179 4.179 11 N -0.551 5.551 12 Si 0.780 3.220 13 H -0.188 1.188 14 H -0.204 1.204 15 H -0.211 1.211 16 C -0.022 4.022 17 O -0.321 6.321 18 C -0.034 4.034 19 C -0.030 4.030 20 C -0.140 4.140 21 C -0.159 4.159 22 C -0.157 4.157 23 C -0.128 4.128 24 H 0.100 0.900 25 H 0.076 0.924 26 H 0.112 0.888 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.119 0.881 39 H 0.086 0.914 40 H 0.129 0.871 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.034 -16.776 5.781 17.861 hybrid contribution 0.524 0.728 -1.068 1.395 sum -1.510 -16.048 4.713 16.794 Atomic orbital electron populations 1.20671 0.87855 1.03692 1.03280 1.20284 0.97950 0.87624 1.12764 1.22138 0.86157 0.86226 0.72426 1.90744 1.16606 1.88805 1.48402 1.86551 1.41400 1.15341 1.82331 1.23149 0.94133 0.81956 0.98834 1.21174 0.92557 0.89441 0.95189 1.20890 0.93377 1.49973 0.89490 0.92145 1.25661 0.95425 0.94407 1.02390 1.69977 1.06736 1.49305 1.29128 0.85552 0.79253 0.77558 0.79684 1.18774 1.20361 1.21076 1.23808 0.86419 0.97044 0.94938 1.89458 1.36217 1.26231 1.80155 1.24079 1.00867 0.81020 0.97474 1.23222 0.96682 0.94939 0.88117 1.21381 0.92421 0.98381 1.01797 1.22452 0.98910 0.92112 1.02392 1.22570 0.93009 0.99782 1.00325 1.21720 0.99269 0.88092 1.03725 0.90030 0.92444 0.88752 0.94006 0.92605 0.92671 0.91396 0.90798 0.89579 0.90307 0.92489 0.91398 0.89812 0.90750 0.88116 0.91402 0.87077 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.49 9.63 71.24 0.69 -1.80 16 2 C -0.19 -5.88 6.00 -18.74 -0.11 -5.99 16 3 C 0.48 20.35 7.86 70.10 0.55 20.90 16 4 O -0.55 -25.60 13.92 19.73 0.27 -25.32 16 5 O -0.34 -15.62 9.34 -57.12 -0.53 -16.16 16 6 C 0.09 4.60 4.71 71.98 0.34 4.94 16 7 C 0.02 0.84 0.56 -52.23 -0.03 0.81 16 8 C -0.50 -27.02 8.21 25.60 0.21 -26.81 16 9 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 10 C 0.02 1.13 5.23 84.65 0.44 1.58 16 11 N -0.91 -51.34 11.23 21.45 0.24 -51.10 16 12 Si 0.95 43.42 29.54 68.60 2.03 45.45 16 13 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 14 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 15 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 16 C 0.06 2.65 7.95 72.27 0.57 3.22 16 17 O -0.40 -19.09 12.40 -148.98 -1.85 -20.94 16 18 C 0.04 1.82 8.26 72.27 0.60 2.41 16 19 C -0.03 -0.75 6.13 -17.00 -0.10 -0.86 16 20 C -0.10 -2.79 4.82 30.52 0.15 -2.64 16 21 C -0.12 -2.13 6.88 31.71 0.22 -1.91 16 22 C -0.12 -1.66 6.94 31.92 0.22 -1.44 16 23 C -0.09 -1.44 6.05 30.86 0.19 -1.26 16 24 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 25 H 0.06 1.72 7.74 -2.39 -0.02 1.70 16 26 H 0.09 1.74 6.43 -2.39 -0.02 1.73 16 27 H 0.04 1.94 8.05 -2.39 -0.02 1.92 16 28 H 0.06 3.14 6.72 -2.39 -0.02 3.12 16 29 H 0.26 14.24 8.32 -92.71 -0.77 13.46 16 30 H 0.07 2.96 8.03 -2.39 -0.02 2.94 16 31 H 0.07 3.86 7.58 -2.39 -0.02 3.84 16 32 H 0.09 3.55 8.09 -2.39 -0.02 3.53 16 33 H 0.08 3.00 8.10 -2.39 -0.02 2.98 16 34 H 0.06 1.86 7.79 -2.39 -0.02 1.84 16 35 H 0.07 2.07 7.57 -2.38 -0.02 2.05 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.10 0.88 8.14 -2.38 -0.02 0.87 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.10 1.28 6.83 -2.39 -0.02 1.27 16 Total: -1.00 -65.80 334.86 5.10 -60.70 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 1.01 Total: 16.21 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 3.93 Total: -8.83 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.24 Total: -51.10 kcal Atomic # 8 Polarization: -60.32 SS G_CDS: -2.11 Total: -62.42 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -65.80 5.10 -60.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526119018.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.958 kcal (2) G-P(sol) polarization free energy of solvation -65.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds