Wall clock time and date at job start Tue Mar 31 2020 01:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99901 * 2 1 4 4 H 1.48499 * 109.47060 * 270.00351 * 3 2 1 5 5 H 1.48504 * 109.46944 * 29.99984 * 3 2 1 6 6 H 1.48493 * 109.47321 * 150.00081 * 3 2 1 7 7 C 1.37876 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00095 * 173.82750 * 7 2 1 9 9 C 1.50699 * 119.99828 * 353.82405 * 7 2 1 10 10 C 1.52998 * 112.99932 * 297.12977 * 9 7 2 11 11 O 1.45202 * 109.47519 * 292.11366 * 10 9 7 12 12 C 1.34222 * 117.00334 * 182.40896 * 11 10 9 13 13 O 1.20838 * 119.99918 * 2.57174 * 12 11 10 14 14 C 1.50693 * 120.00366 * 182.56819 * 12 11 10 15 15 C 1.51850 * 108.65288 * 144.96956 * 14 12 11 16 16 C 1.53039 * 110.71868 * 187.58385 * 15 14 12 17 17 C 1.51371 * 108.61378 * 274.28750 * 16 15 14 18 18 C 1.29517 * 120.36500 * 71.89801 * 17 16 15 19 19 C 1.51373 * 120.35812 * 359.97438 * 18 17 16 20 20 C 1.51769 * 108.59249 * 269.08029 * 14 12 11 21 21 C 1.54035 * 113.92782 * 69.06639 * 9 7 2 22 22 O 1.44174 * 85.51822 * 91.65852 * 21 9 7 23 23 C 1.44174 * 93.34391 * 24.19255 * 22 21 9 24 24 H 0.96996 * 120.00190 * 5.03721 * 1 2 3 25 25 H 1.09009 * 109.47101 * 172.11304 * 10 9 7 26 26 H 1.09002 * 109.47140 * 52.11924 * 10 9 7 27 27 H 1.09007 * 108.48743 * 27.01704 * 14 12 11 28 28 H 1.09003 * 109.22274 * 67.27416 * 15 14 12 29 29 H 1.09004 * 109.21867 * 307.88440 * 15 14 12 30 30 H 1.09003 * 109.60976 * 34.02628 * 16 15 14 31 31 H 1.08997 * 109.60956 * 154.54745 * 16 15 14 32 32 H 1.08006 * 119.81679 * 251.87584 * 17 16 15 33 33 H 1.07996 * 119.82129 * 179.97438 * 18 17 16 34 34 H 1.09005 * 109.61617 * 47.84227 * 19 18 17 35 35 H 1.09004 * 109.61332 * 168.35843 * 19 18 17 36 36 H 1.09001 * 109.23608 * 52.05602 * 20 14 12 37 37 H 1.09004 * 109.19462 * 292.67139 * 20 14 12 38 38 H 1.08996 * 113.86508 * 205.80950 * 21 9 7 39 39 H 1.09003 * 113.86406 * 337.51019 * 21 9 7 40 40 H 1.08996 * 113.86773 * 221.66211 * 23 22 21 41 41 H 1.09001 * 113.97827 * 89.96312 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0799 -1.1967 -0.1011 9 6 1.2577 -2.4954 0.1393 10 6 0.5236 -2.6227 1.4756 11 8 1.4924 -2.7329 2.5516 12 6 1.0087 -2.9026 3.7921 13 8 -0.1825 -3.0038 3.9675 14 6 1.9513 -2.9668 4.9661 15 6 1.2831 -2.3115 6.1618 16 6 2.2660 -2.1819 7.3276 17 6 2.2521 -3.4733 8.1172 18 6 2.7876 -4.5460 7.6274 19 6 3.4337 -4.5221 6.2587 20 6 2.3341 -4.4166 5.2005 21 6 0.3911 -2.8528 -1.0830 22 8 1.5532 -3.5619 -1.5576 23 6 2.0932 -3.7351 -0.2320 24 1 -0.4850 0.8368 -0.0738 25 1 -0.1060 -3.5125 1.4610 26 1 -0.0973 -1.7410 1.6345 27 1 2.8513 -2.4041 4.7180 28 1 0.4331 -2.9179 6.4749 29 1 0.9311 -1.3199 5.8774 30 1 3.2691 -1.9996 6.9419 31 1 1.9632 -1.3561 7.9714 32 1 1.7934 -3.5002 9.0947 33 1 2.7731 -5.4625 8.1985 34 1 4.0979 -3.6611 6.1825 35 1 4.0016 -5.4400 6.1061 36 1 2.6924 -4.8490 4.2662 37 1 1.4571 -4.9688 5.5383 38 1 -0.4551 -3.4990 -0.8498 39 1 0.1177 -1.9940 -1.6960 40 1 3.1697 -3.5760 -0.1701 41 1 1.7680 -4.6503 0.2627 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526119196.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:47 Heat of formation + Delta-G solvation = -98.476611 kcal Electronic energy + Delta-G solvation = -22655.849145 eV Core-core repulsion = 19308.930396 eV Total energy + Delta-G solvation = -3346.918749 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.22760 -39.22604 -38.09383 -35.64603 -33.01009 -32.74323 -31.93642 -29.91134 -26.44929 -25.41159 -25.11558 -24.16566 -23.99905 -21.57429 -19.65243 -18.99095 -18.12736 -17.15198 -16.69086 -16.28454 -15.61547 -15.53673 -14.84941 -14.65568 -14.36967 -14.31320 -14.02950 -13.64525 -13.21827 -13.07609 -12.71988 -12.50358 -12.02133 -11.91219 -11.67935 -11.62587 -11.32111 -10.99196 -10.81863 -10.74864 -10.68845 -10.46085 -10.41688 -10.08479 -9.94365 -9.57090 -9.36245 -9.12243 -9.04554 -8.73161 -8.34405 -6.18606 -4.23375 2.18386 2.80523 3.24094 3.31218 3.34444 3.37190 4.31187 4.50304 4.75787 4.87982 4.92862 4.95822 5.04361 5.11771 5.14998 5.32675 5.45325 5.51698 5.62223 5.68302 5.74522 5.88954 5.97100 6.06608 6.09084 6.09947 6.15072 6.17086 6.31189 6.32527 6.39649 6.55654 6.59288 6.80382 6.97796 7.14153 7.27799 7.36216 7.38540 7.77341 8.17427 8.47724 8.74328 9.40475 10.88388 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018858 B = 0.005032 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.438379 B = 5563.413777 C = 6299.384605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.488 4.488 8 H 0.066 0.934 9 C 0.033 3.967 10 C 0.079 3.921 11 O -0.338 6.338 12 C 0.453 3.547 13 O -0.523 6.523 14 C -0.076 4.076 15 C -0.101 4.101 16 C -0.091 4.091 17 C -0.156 4.156 18 C -0.160 4.160 19 C -0.089 4.089 20 C -0.104 4.104 21 C 0.050 3.950 22 O -0.389 6.389 23 C 0.031 3.969 24 H 0.266 0.734 25 H 0.036 0.964 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.047 0.953 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.727 -6.296 13.186 15.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.525 4.525 8 H 0.085 0.915 9 C 0.033 3.967 10 C 0.006 3.994 11 O -0.253 6.253 12 C 0.296 3.704 13 O -0.412 6.412 14 C -0.096 4.096 15 C -0.139 4.139 16 C -0.128 4.128 17 C -0.174 4.174 18 C -0.178 4.178 19 C -0.126 4.126 20 C -0.142 4.142 21 C -0.027 4.027 22 O -0.308 6.308 23 C -0.046 4.046 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.109 0.891 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.296 -6.260 12.970 15.029 hybrid contribution -0.019 0.925 0.148 0.937 sum 4.277 -5.335 13.118 14.793 Atomic orbital electron populations 1.69856 1.05943 1.27542 1.49375 1.24985 0.94964 0.99375 0.94390 0.86472 0.79908 0.82775 0.78290 1.20475 1.21112 1.19598 1.20618 0.93482 0.88315 1.50127 0.91540 1.21090 0.92446 0.94586 0.88609 1.23522 0.90187 1.00662 0.85043 1.86499 1.42243 1.80827 1.15687 1.23679 0.88632 0.72757 0.85304 1.90599 1.17891 1.46427 1.86332 1.20671 0.98575 0.99018 0.91311 1.21193 0.98455 1.01348 0.92885 1.20824 1.00002 0.95797 0.96168 1.22568 1.00109 0.95260 0.99488 1.22559 0.99984 0.98188 0.97036 1.20791 0.97104 1.02709 0.91981 1.21199 0.99406 0.93986 0.99596 1.23919 0.87912 0.94045 0.96846 1.89485 1.37308 1.78096 1.25928 1.23998 0.99643 0.97450 0.83464 0.92458 0.94569 0.89105 0.88298 0.90568 0.91078 0.90668 0.91074 0.87603 0.87596 0.90576 0.91002 0.90589 0.91097 0.93450 0.88527 0.90383 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.10 11.27 55.43 0.62 -23.48 16 2 C 0.07 1.73 5.23 -17.82 -0.09 1.63 16 3 Si 0.90 20.70 29.55 -169.99 -5.02 15.67 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.49 -12.89 8.23 -34.44 -0.28 -13.18 16 8 H 0.07 1.76 7.81 -52.48 -0.41 1.35 16 9 C 0.03 0.81 0.56 -154.58 -0.09 0.72 16 10 C 0.08 1.87 4.72 37.16 0.18 2.05 16 11 O -0.34 -7.32 10.03 -39.24 -0.39 -7.71 16 12 C 0.45 8.73 6.81 36.00 0.25 8.98 16 13 O -0.52 -11.39 16.04 -18.76 -0.30 -11.69 16 14 C -0.08 -1.08 2.12 -92.98 -0.20 -1.28 16 15 C -0.10 -1.31 4.46 -27.30 -0.12 -1.43 16 16 C -0.09 -0.92 5.62 -27.53 -0.15 -1.07 16 17 C -0.16 -1.49 9.34 -35.28 -0.33 -1.82 16 18 C -0.16 -1.50 9.34 -35.28 -0.33 -1.83 16 19 C -0.09 -0.85 5.61 -27.57 -0.15 -1.01 16 20 C -0.10 -1.25 4.89 -27.37 -0.13 -1.39 16 21 C 0.05 1.18 7.95 37.61 0.30 1.48 16 22 O -0.39 -9.29 12.40 -35.23 -0.44 -9.73 16 23 C 0.03 0.68 8.24 37.61 0.31 0.99 16 24 H 0.27 6.91 8.32 -40.82 -0.34 6.58 16 25 H 0.04 0.81 7.94 -51.92 -0.41 0.40 16 26 H 0.09 2.40 6.74 -51.93 -0.35 2.05 16 27 H 0.10 1.32 7.89 -51.93 -0.41 0.91 16 28 H 0.08 1.05 7.74 -51.93 -0.40 0.65 16 29 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 30 H 0.07 0.72 6.68 -51.93 -0.35 0.38 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.11 0.88 8.06 -52.48 -0.42 0.46 16 33 H 0.11 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.08 0.71 6.68 -51.93 -0.35 0.36 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 37 H 0.07 0.89 7.85 -51.93 -0.41 0.48 16 38 H 0.05 1.03 8.01 -51.93 -0.42 0.61 16 39 H 0.10 2.44 7.63 -51.93 -0.40 2.05 16 40 H 0.08 1.63 8.08 -51.93 -0.42 1.21 16 41 H 0.05 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 331.80 15.07 5.00 5.00 Total: -1.00 -29.22 331.80 -7.79 -37.01 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.41 Total: 2.07 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -0.85 Total: -7.15 kcal Atomic # 7 Polarization: -24.10 SS G_CDS: 0.62 Total: -23.48 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -1.13 Total: -29.13 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.22 -7.79 -37.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526119196.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.466 kcal (2) G-P(sol) polarization free energy of solvation -29.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds