Wall clock time and date at job start Tue Mar 31 2020 01:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99901 * 2 1 4 4 H 1.48499 * 109.47060 * 270.00351 * 3 2 1 5 5 H 1.48504 * 109.46944 * 29.99984 * 3 2 1 6 6 H 1.48493 * 109.47321 * 150.00081 * 3 2 1 7 7 C 1.37876 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00095 * 173.82750 * 7 2 1 9 9 C 1.50699 * 119.99828 * 353.82405 * 7 2 1 10 10 C 1.52998 * 112.99932 * 297.12977 * 9 7 2 11 11 O 1.45202 * 109.47519 * 292.11366 * 10 9 7 12 12 C 1.34222 * 117.00334 * 182.40896 * 11 10 9 13 13 O 1.20838 * 119.99918 * 2.57174 * 12 11 10 14 14 C 1.50693 * 120.00366 * 182.56819 * 12 11 10 15 15 C 1.51850 * 108.65288 * 144.96956 * 14 12 11 16 16 C 1.53039 * 110.71868 * 187.58385 * 15 14 12 17 17 C 1.51371 * 108.61378 * 274.28750 * 16 15 14 18 18 C 1.29517 * 120.36500 * 71.89801 * 17 16 15 19 19 C 1.51373 * 120.35812 * 359.97438 * 18 17 16 20 20 C 1.51769 * 108.59249 * 269.08029 * 14 12 11 21 21 C 1.54035 * 113.92782 * 69.06639 * 9 7 2 22 22 O 1.44174 * 85.51822 * 91.65852 * 21 9 7 23 23 C 1.44174 * 93.34391 * 24.19255 * 22 21 9 24 24 H 0.96996 * 120.00190 * 5.03721 * 1 2 3 25 25 H 1.09009 * 109.47101 * 172.11304 * 10 9 7 26 26 H 1.09002 * 109.47140 * 52.11924 * 10 9 7 27 27 H 1.09007 * 108.48743 * 27.01704 * 14 12 11 28 28 H 1.09003 * 109.22274 * 67.27416 * 15 14 12 29 29 H 1.09004 * 109.21867 * 307.88440 * 15 14 12 30 30 H 1.09003 * 109.60976 * 34.02628 * 16 15 14 31 31 H 1.08997 * 109.60956 * 154.54745 * 16 15 14 32 32 H 1.08006 * 119.81679 * 251.87584 * 17 16 15 33 33 H 1.07996 * 119.82129 * 179.97438 * 18 17 16 34 34 H 1.09005 * 109.61617 * 47.84227 * 19 18 17 35 35 H 1.09004 * 109.61332 * 168.35843 * 19 18 17 36 36 H 1.09001 * 109.23608 * 52.05602 * 20 14 12 37 37 H 1.09004 * 109.19462 * 292.67139 * 20 14 12 38 38 H 1.08996 * 113.86508 * 205.80950 * 21 9 7 39 39 H 1.09003 * 113.86406 * 337.51019 * 21 9 7 40 40 H 1.08996 * 113.86773 * 221.66211 * 23 22 21 41 41 H 1.09001 * 113.97827 * 89.96312 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0799 -1.1967 -0.1011 9 6 1.2577 -2.4954 0.1393 10 6 0.5236 -2.6227 1.4756 11 8 1.4924 -2.7329 2.5516 12 6 1.0087 -2.9026 3.7921 13 8 -0.1825 -3.0038 3.9675 14 6 1.9513 -2.9668 4.9661 15 6 1.2831 -2.3115 6.1618 16 6 2.2660 -2.1819 7.3276 17 6 2.2521 -3.4733 8.1172 18 6 2.7876 -4.5460 7.6274 19 6 3.4337 -4.5221 6.2587 20 6 2.3341 -4.4166 5.2005 21 6 0.3911 -2.8528 -1.0830 22 8 1.5532 -3.5619 -1.5576 23 6 2.0932 -3.7351 -0.2320 24 1 -0.4850 0.8368 -0.0738 25 1 -0.1060 -3.5125 1.4610 26 1 -0.0973 -1.7410 1.6345 27 1 2.8513 -2.4041 4.7180 28 1 0.4331 -2.9179 6.4749 29 1 0.9311 -1.3199 5.8774 30 1 3.2691 -1.9996 6.9419 31 1 1.9632 -1.3561 7.9714 32 1 1.7934 -3.5002 9.0947 33 1 2.7731 -5.4625 8.1985 34 1 4.0979 -3.6611 6.1825 35 1 4.0016 -5.4400 6.1061 36 1 2.6924 -4.8490 4.2662 37 1 1.4571 -4.9688 5.5383 38 1 -0.4551 -3.4990 -0.8498 39 1 0.1177 -1.9940 -1.6960 40 1 3.1697 -3.5760 -0.1701 41 1 1.7680 -4.6503 0.2627 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526119196.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:46 Heat of formation + Delta-G solvation = -113.965349 kcal Electronic energy + Delta-G solvation = -22656.520787 eV Core-core repulsion = 19308.930396 eV Total energy + Delta-G solvation = -3347.590391 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.77151 -40.97115 -39.21531 -37.31801 -34.94719 -33.79956 -32.80687 -31.79458 -27.79116 -27.21786 -26.87016 -25.78290 -24.95915 -22.86402 -21.03930 -20.79658 -18.89937 -18.67525 -18.38758 -17.64666 -17.28699 -17.01135 -16.61990 -16.24546 -16.19817 -15.87044 -15.30537 -14.84565 -14.35348 -14.17413 -13.99133 -13.91072 -13.73282 -13.61891 -13.10665 -12.84255 -12.67428 -12.64496 -12.35004 -12.15658 -11.88167 -11.83123 -11.71108 -11.57973 -11.29927 -11.23562 -11.16446 -10.93644 -10.68630 -10.25033 -9.89826 -8.19515 -6.30136 1.22334 1.40755 1.42819 1.49355 1.52222 1.85274 2.39099 2.97889 3.19602 3.51395 3.64351 3.80887 4.07032 4.11913 4.21181 4.24167 4.26580 4.43508 4.44482 4.44852 4.47067 4.57537 4.59616 4.62925 4.77150 4.85453 4.91066 5.02608 5.09320 5.13985 5.19398 5.21580 5.28823 5.38053 5.45108 5.50374 5.70410 5.72047 5.84116 6.09479 6.21065 6.69811 6.85160 7.36197 8.86311 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018858 B = 0.005032 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.438379 B = 5563.413777 C = 6299.384605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.023 3.977 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.504 4.504 8 H 0.061 0.939 9 C 0.017 3.983 10 C 0.092 3.908 11 O -0.345 6.345 12 C 0.448 3.552 13 O -0.552 6.552 14 C -0.068 4.068 15 C -0.099 4.099 16 C -0.085 4.085 17 C -0.164 4.164 18 C -0.161 4.161 19 C -0.085 4.085 20 C -0.100 4.100 21 C 0.054 3.946 22 O -0.402 6.402 23 C 0.042 3.958 24 H 0.265 0.735 25 H 0.042 0.958 26 H 0.056 0.944 27 H 0.110 0.890 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.369 -6.929 14.636 17.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.177 4.177 3 Si 0.779 3.221 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.016 3.984 10 C 0.018 3.982 11 O -0.260 6.260 12 C 0.293 3.707 13 O -0.444 6.444 14 C -0.087 4.087 15 C -0.136 4.136 16 C -0.122 4.122 17 C -0.182 4.182 18 C -0.179 4.179 19 C -0.122 4.122 20 C -0.138 4.138 21 C -0.024 4.024 22 O -0.322 6.322 23 C -0.035 4.035 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.128 0.872 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.952 -6.904 14.428 17.067 hybrid contribution -0.563 1.092 -0.288 1.262 sum 5.389 -5.812 14.140 16.210 Atomic orbital electron populations 1.69961 1.07020 1.28037 1.49988 1.25657 0.95675 1.02207 0.94188 0.85607 0.78947 0.79234 0.78333 1.20081 1.21106 1.18895 1.20853 0.93415 0.89636 1.50214 0.92099 1.21168 0.93214 0.95060 0.88910 1.23146 0.90114 0.99270 0.85700 1.86512 1.41871 1.81229 1.16415 1.24811 0.89227 0.71222 0.85435 1.90580 1.19528 1.47753 1.86503 1.20893 0.97583 1.01029 0.89212 1.21190 0.98923 1.00027 0.93502 1.20791 0.99455 0.96883 0.95116 1.22685 1.00480 0.94934 1.00110 1.22734 0.99527 0.98756 0.96915 1.20789 0.96287 1.03972 0.91136 1.21209 1.00090 0.91914 1.00602 1.23836 0.88562 0.93791 0.96166 1.89458 1.37469 1.78084 1.27147 1.24085 0.99872 0.97299 0.82200 0.92599 0.93937 0.92562 0.87157 0.91749 0.92593 0.89830 0.89841 0.86363 0.86118 0.89958 0.89188 0.90638 0.91847 0.91484 0.90798 0.89507 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.31 11.27 21.45 0.24 -50.07 16 2 C 0.02 1.21 5.23 84.65 0.44 1.66 16 3 Si 0.95 42.46 29.55 68.60 2.03 44.48 16 4 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.50 -26.70 8.23 25.60 0.21 -26.49 16 8 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 9 C 0.02 0.83 0.56 -52.23 -0.03 0.80 16 10 C 0.09 4.38 4.72 71.98 0.34 4.72 16 11 O -0.35 -14.94 10.03 -51.34 -0.51 -15.46 16 12 C 0.45 17.28 6.81 71.23 0.49 17.76 16 13 O -0.55 -24.49 16.04 21.93 0.35 -24.14 16 14 C -0.07 -1.86 2.12 -12.32 -0.03 -1.89 16 15 C -0.10 -2.48 4.46 30.23 0.13 -2.34 16 16 C -0.09 -1.54 5.62 30.07 0.17 -1.37 16 17 C -0.16 -2.71 9.34 27.38 0.26 -2.45 16 18 C -0.16 -2.55 9.34 27.38 0.26 -2.30 16 19 C -0.08 -1.38 5.61 30.05 0.17 -1.21 16 20 C -0.10 -2.24 4.89 30.18 0.15 -2.09 16 21 C 0.05 2.54 7.95 72.27 0.57 3.12 16 22 O -0.40 -18.88 12.40 -148.98 -1.85 -20.72 16 23 C 0.04 1.76 8.24 72.28 0.60 2.36 16 24 H 0.26 14.04 8.32 -92.71 -0.77 13.27 16 25 H 0.04 1.92 7.94 -2.38 -0.02 1.91 16 26 H 0.06 3.06 6.74 -2.39 -0.02 3.05 16 27 H 0.11 2.77 7.89 -2.38 -0.02 2.75 16 28 H 0.06 1.76 7.74 -2.39 -0.02 1.74 16 29 H 0.06 1.55 8.10 -2.38 -0.02 1.53 16 30 H 0.08 1.38 6.68 -2.39 -0.02 1.36 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.12 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.12 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.08 1.26 6.68 -2.38 -0.02 1.25 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.69 8.10 -2.39 -0.02 1.67 16 37 H 0.06 1.51 7.85 -2.38 -0.02 1.49 16 38 H 0.07 2.88 8.01 -2.39 -0.02 2.86 16 39 H 0.07 3.82 7.63 -2.39 -0.02 3.80 16 40 H 0.09 3.48 8.08 -2.39 -0.02 3.46 16 41 H 0.08 2.91 8.10 -2.39 -0.02 2.89 16 Total: -1.00 -62.70 331.80 4.99 -57.71 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 1.00 Total: 17.92 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 3.72 Total: -9.73 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.24 Total: -50.07 kcal Atomic # 8 Polarization: -58.31 SS G_CDS: -2.01 Total: -60.32 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -62.70 4.99 -57.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526119196.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.252 kcal (2) G-P(sol) polarization free energy of solvation -62.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds