Wall clock time and date at job start Tue Mar 31 2020 01:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48502 * 109.47096 * 276.20856 * 3 2 1 5 5 H 1.48499 * 109.46846 * 36.20007 * 3 2 1 6 6 H 1.48492 * 109.47457 * 156.20329 * 3 2 1 7 7 C 1.37883 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99679 * 350.68420 * 7 2 1 9 9 C 1.50698 * 120.00343 * 170.68786 * 7 2 1 10 10 C 1.53000 * 113.00019 * 87.89701 * 9 7 2 11 11 O 1.45200 * 109.46979 * 53.92504 * 10 9 7 12 12 C 1.34231 * 116.99783 * 183.46422 * 11 10 9 13 13 O 1.20815 * 120.00336 * 359.28939 * 12 11 10 14 14 C 1.50701 * 119.99607 * 179.29089 * 12 11 10 15 15 H 1.09004 * 109.36123 * 35.13780 * 14 12 11 16 16 C 1.53186 * 109.33316 * 275.68143 * 14 12 11 17 17 C 1.53293 * 108.42493 * 185.39483 * 16 14 12 18 18 C 1.52879 * 108.73975 * 74.30589 * 17 16 14 19 19 C 1.52078 * 110.51084 * 305.01983 * 18 17 16 20 20 H 1.09002 * 114.63261 * 165.62360 * 19 18 17 21 21 C 1.52305 * 119.84342 * 310.44995 * 19 18 17 22 22 C 1.52072 * 120.02076 * 21.70506 * 19 18 17 23 23 H 1.08992 * 117.25541 * 143.33263 * 22 19 18 24 24 C 1.54028 * 113.92429 * 219.83210 * 9 7 2 25 25 O 1.44182 * 85.52231 * 91.65817 * 24 9 7 26 26 C 1.44186 * 93.33674 * 24.19114 * 25 24 9 27 27 H 0.96997 * 119.99765 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47566 * 293.91959 * 10 9 7 29 29 H 1.09004 * 109.47068 * 173.92141 * 10 9 7 30 30 H 1.09003 * 109.88727 * 65.60661 * 16 14 12 31 31 H 1.09007 * 109.51030 * 304.96499 * 16 14 12 32 32 H 1.09003 * 109.61717 * 314.48705 * 17 16 14 33 33 H 1.08994 * 109.62217 * 194.12581 * 17 16 14 34 34 H 1.08994 * 109.26884 * 65.28495 * 18 17 16 35 35 H 1.08997 * 109.26575 * 184.79482 * 18 17 16 36 36 H 1.08994 * 117.53852 * 217.19861 * 21 19 18 37 37 H 1.09000 * 117.53546 * 2.36753 * 21 19 18 38 38 H 1.09000 * 113.86818 * 205.80230 * 24 9 7 39 39 H 1.09000 * 113.86865 * 337.51486 * 24 9 7 40 40 H 1.08993 * 113.86300 * 221.66659 * 26 25 24 41 41 H 1.09003 * 113.86284 * 89.95244 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3656 2.1220 -1.3919 5 1 1.5183 2.6112 0.8269 6 1 3.6060 1.4058 0.5649 7 6 2.0045 -1.1941 -0.0005 8 1 1.4751 -2.1233 0.1505 9 6 3.4966 -1.2026 -0.2117 10 6 4.2854 -1.0413 1.0893 11 8 3.8563 -2.0480 2.0435 12 6 4.4033 -1.9991 3.2684 13 8 5.2233 -1.1514 3.5304 14 6 3.9945 -3.0017 4.3166 15 1 3.8013 -3.9633 3.8411 16 6 2.7170 -2.5182 5.0099 17 6 2.3958 -3.4801 6.1594 18 6 3.3747 -3.2210 7.3048 19 6 4.8100 -3.3268 6.8132 20 1 5.5554 -2.9197 7.4964 21 6 5.2448 -4.5380 5.9986 22 6 5.1222 -3.1578 5.3345 23 1 6.0488 -2.6458 5.0754 24 6 3.9948 -2.3564 -1.1022 25 8 3.8376 -1.4300 -2.1958 26 6 3.9696 -0.2731 -1.3453 27 1 -0.4850 0.8400 0.0004 28 1 4.1057 -0.0489 1.5025 29 1 5.3495 -1.1631 0.8865 30 1 1.8905 -2.5083 4.2993 31 1 2.8748 -1.5148 5.4056 32 1 2.4994 -4.5092 5.8153 33 1 1.3759 -3.3106 6.5045 34 1 3.2042 -2.2214 7.7044 35 1 3.2097 -3.9563 8.0922 36 1 6.2482 -4.9272 6.1706 37 1 4.4859 -5.2829 5.7590 38 1 5.0290 -2.6444 -0.9135 39 1 3.3144 -3.2070 -1.1437 40 1 3.2693 0.5285 -1.5795 41 1 4.9962 0.0750 -1.2307 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526121082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:57 Heat of formation + Delta-G solvation = -75.551290 kcal Electronic energy + Delta-G solvation = -22793.049371 eV Core-core repulsion = 19447.124739 eV Total energy + Delta-G solvation = -3345.924632 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.53846 -39.69614 -38.74987 -35.81853 -33.23839 -32.83458 -31.43221 -30.50103 -26.12040 -25.83286 -25.02649 -24.22859 -22.74805 -21.86636 -20.29538 -19.14231 -18.44980 -17.31898 -16.87541 -16.21178 -16.18025 -15.64156 -15.27405 -14.70026 -14.46260 -14.32605 -13.95983 -13.72855 -13.61030 -12.95628 -12.94276 -12.70157 -12.35026 -12.08012 -11.98048 -11.54807 -11.29841 -11.06707 -11.02897 -10.50899 -10.43595 -10.42231 -10.30947 -10.14704 -10.02936 -9.81230 -9.65615 -9.50384 -9.22913 -8.70429 -8.60590 -6.23211 -4.21295 2.64089 3.11634 3.15542 3.21397 3.26800 3.63958 4.23296 4.48004 4.54990 4.67282 4.71242 4.86095 4.98922 5.09946 5.10904 5.18618 5.32797 5.36905 5.44143 5.57834 5.65098 5.67588 5.75631 5.84910 5.88646 5.97181 5.98099 5.98861 6.00284 6.06219 6.17049 6.20054 6.25203 6.31475 6.32862 6.62048 6.92953 6.98048 7.11225 7.53349 8.27179 8.37760 8.82300 9.36918 10.89204 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.022203 B = 0.005110 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.774341 B = 5477.669394 C = 5967.668763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.077 3.923 3 Si 0.865 3.135 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.258 1.258 7 C -0.485 4.485 8 H 0.087 0.913 9 C -0.005 4.005 10 C 0.069 3.931 11 O -0.324 6.324 12 C 0.460 3.540 13 O -0.524 6.524 14 C -0.047 4.047 15 H 0.105 0.895 16 C -0.112 4.112 17 C -0.119 4.119 18 C -0.090 4.090 19 C -0.135 4.135 20 H 0.099 0.901 21 C -0.180 4.180 22 C -0.138 4.138 23 H 0.115 0.885 24 C 0.041 3.959 25 O -0.370 6.370 26 C 0.023 3.977 27 H 0.267 0.733 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.065 -6.859 11.927 15.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.126 4.126 3 Si 0.695 3.305 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.183 1.183 7 C -0.523 4.523 8 H 0.105 0.895 9 C -0.006 4.006 10 C -0.005 4.005 11 O -0.238 6.238 12 C 0.303 3.697 13 O -0.414 6.414 14 C -0.066 4.066 15 H 0.123 0.877 16 C -0.149 4.149 17 C -0.156 4.156 18 C -0.127 4.127 19 C -0.153 4.153 20 H 0.117 0.883 21 C -0.217 4.217 22 C -0.156 4.156 23 H 0.133 0.867 24 C -0.036 4.036 25 O -0.289 6.289 26 C -0.053 4.053 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.069 -6.519 11.668 15.613 hybrid contribution 0.655 1.234 0.127 1.403 sum 8.724 -5.285 11.795 15.594 Atomic orbital electron populations 1.69870 1.06092 1.27148 1.48996 1.24945 0.94723 0.98676 0.94252 0.87303 0.80896 0.84447 0.77883 1.20160 1.21594 1.18260 1.20305 0.86837 0.95451 1.49660 0.89539 1.21641 0.98296 0.92326 0.88314 1.23848 0.96669 0.90356 0.89666 1.86574 1.63143 1.53107 1.21001 1.23563 0.78374 0.84418 0.83325 1.90581 1.32726 1.37142 1.80917 1.20487 0.95970 0.98192 0.91949 0.87727 1.21615 0.95584 0.99767 0.97943 1.21593 0.99184 0.99609 0.95229 1.20884 0.92055 1.02010 0.97791 1.21847 0.98142 1.01967 0.93355 0.88328 1.23169 1.02526 0.91109 1.04870 1.22071 0.99886 1.00439 0.93236 0.86704 1.23988 0.98456 0.95089 0.86095 1.89571 1.93383 1.16807 1.29092 1.24245 0.98849 0.91528 0.90709 0.92316 0.91338 0.93494 0.89659 0.91040 0.91467 0.91004 0.91336 0.91459 0.88852 0.88408 0.92381 0.89382 0.89789 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.13 13.96 55.43 0.77 -25.36 16 2 C 0.08 2.15 5.40 -17.82 -0.10 2.05 16 3 Si 0.87 20.81 23.75 -169.99 -4.04 16.78 16 4 H -0.27 -6.44 6.74 56.52 0.38 -6.06 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -5.80 4.90 56.52 0.28 -5.52 16 7 C -0.49 -13.13 8.62 -34.44 -0.30 -13.43 16 8 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 9 C 0.00 -0.11 0.51 -154.58 -0.08 -0.18 16 10 C 0.07 1.47 4.60 37.16 0.17 1.65 16 11 O -0.32 -6.71 9.83 -39.26 -0.39 -7.10 16 12 C 0.46 8.50 7.05 36.01 0.25 8.76 16 13 O -0.52 -10.74 15.43 -18.74 -0.29 -11.02 16 14 C -0.05 -0.66 2.56 -91.82 -0.23 -0.90 16 15 H 0.10 1.34 8.06 -51.93 -0.42 0.92 16 16 C -0.11 -1.49 5.22 -26.48 -0.14 -1.63 16 17 C -0.12 -1.21 5.69 -26.64 -0.15 -1.36 16 18 C -0.09 -0.85 5.94 -27.26 -0.16 -1.01 16 19 C -0.13 -1.39 6.00 -91.92 -0.55 -1.94 16 20 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 21 C -0.18 -1.75 9.66 -26.75 -0.26 -2.01 16 22 C -0.14 -1.72 5.40 -90.90 -0.49 -2.22 16 23 H 0.11 1.61 7.14 -51.93 -0.37 1.24 16 24 C 0.04 0.84 8.35 37.61 0.31 1.15 16 25 O -0.37 -8.50 12.40 -35.23 -0.44 -8.93 16 26 C 0.02 0.52 6.58 37.61 0.25 0.76 16 27 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.07 1.56 5.67 -51.93 -0.29 1.27 16 29 H 0.05 0.91 8.06 -51.93 -0.42 0.49 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.07 1.01 8.05 -51.93 -0.42 0.59 16 32 H 0.07 0.64 7.11 -51.93 -0.37 0.27 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.10 0.88 7.26 -51.93 -0.38 0.51 16 38 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 39 H 0.09 1.79 8.09 -51.93 -0.42 1.37 16 40 H 0.08 1.97 3.76 -51.93 -0.20 1.77 16 41 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 LS Contribution 320.26 15.07 4.83 4.83 Total: -1.00 -30.64 320.26 -7.38 -38.02 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.36 Total: 3.09 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -1.47 Total: -10.30 kcal Atomic # 7 Polarization: -26.13 SS G_CDS: 0.77 Total: -25.36 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -1.11 Total: -27.06 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.04 Total: 16.78 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.64 -7.38 -38.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526121082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.528 kcal (2) G-P(sol) polarization free energy of solvation -30.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds