Wall clock time and date at job start Tue Mar 31 2020 01:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48502 * 109.47096 * 276.20856 * 3 2 1 5 5 H 1.48499 * 109.46846 * 36.20007 * 3 2 1 6 6 H 1.48492 * 109.47457 * 156.20329 * 3 2 1 7 7 C 1.37883 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99679 * 350.68420 * 7 2 1 9 9 C 1.50698 * 120.00343 * 170.68786 * 7 2 1 10 10 C 1.53000 * 113.00019 * 87.89701 * 9 7 2 11 11 O 1.45200 * 109.46979 * 53.92504 * 10 9 7 12 12 C 1.34231 * 116.99783 * 183.46422 * 11 10 9 13 13 O 1.20815 * 120.00336 * 359.28939 * 12 11 10 14 14 C 1.50701 * 119.99607 * 179.29089 * 12 11 10 15 15 H 1.09004 * 109.36123 * 35.13780 * 14 12 11 16 16 C 1.53186 * 109.33316 * 275.68143 * 14 12 11 17 17 C 1.53293 * 108.42493 * 185.39483 * 16 14 12 18 18 C 1.52879 * 108.73975 * 74.30589 * 17 16 14 19 19 C 1.52078 * 110.51084 * 305.01983 * 18 17 16 20 20 H 1.09002 * 114.63261 * 165.62360 * 19 18 17 21 21 C 1.52305 * 119.84342 * 310.44995 * 19 18 17 22 22 C 1.52072 * 120.02076 * 21.70506 * 19 18 17 23 23 H 1.08992 * 117.25541 * 143.33263 * 22 19 18 24 24 C 1.54028 * 113.92429 * 219.83210 * 9 7 2 25 25 O 1.44182 * 85.52231 * 91.65817 * 24 9 7 26 26 C 1.44186 * 93.33674 * 24.19114 * 25 24 9 27 27 H 0.96997 * 119.99765 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47566 * 293.91959 * 10 9 7 29 29 H 1.09004 * 109.47068 * 173.92141 * 10 9 7 30 30 H 1.09003 * 109.88727 * 65.60661 * 16 14 12 31 31 H 1.09007 * 109.51030 * 304.96499 * 16 14 12 32 32 H 1.09003 * 109.61717 * 314.48705 * 17 16 14 33 33 H 1.08994 * 109.62217 * 194.12581 * 17 16 14 34 34 H 1.08994 * 109.26884 * 65.28495 * 18 17 16 35 35 H 1.08997 * 109.26575 * 184.79482 * 18 17 16 36 36 H 1.08994 * 117.53852 * 217.19861 * 21 19 18 37 37 H 1.09000 * 117.53546 * 2.36753 * 21 19 18 38 38 H 1.09000 * 113.86818 * 205.80230 * 24 9 7 39 39 H 1.09000 * 113.86865 * 337.51486 * 24 9 7 40 40 H 1.08993 * 113.86300 * 221.66659 * 26 25 24 41 41 H 1.09003 * 113.86284 * 89.95244 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3656 2.1220 -1.3919 5 1 1.5183 2.6112 0.8269 6 1 3.6060 1.4058 0.5649 7 6 2.0045 -1.1941 -0.0005 8 1 1.4751 -2.1233 0.1505 9 6 3.4966 -1.2026 -0.2117 10 6 4.2854 -1.0413 1.0893 11 8 3.8563 -2.0480 2.0435 12 6 4.4033 -1.9991 3.2684 13 8 5.2233 -1.1514 3.5304 14 6 3.9945 -3.0017 4.3166 15 1 3.8013 -3.9633 3.8411 16 6 2.7170 -2.5182 5.0099 17 6 2.3958 -3.4801 6.1594 18 6 3.3747 -3.2210 7.3048 19 6 4.8100 -3.3268 6.8132 20 1 5.5554 -2.9197 7.4964 21 6 5.2448 -4.5380 5.9986 22 6 5.1222 -3.1578 5.3345 23 1 6.0488 -2.6458 5.0754 24 6 3.9948 -2.3564 -1.1022 25 8 3.8376 -1.4300 -2.1958 26 6 3.9696 -0.2731 -1.3453 27 1 -0.4850 0.8400 0.0004 28 1 4.1057 -0.0489 1.5025 29 1 5.3495 -1.1631 0.8865 30 1 1.8905 -2.5083 4.2993 31 1 2.8748 -1.5148 5.4056 32 1 2.4994 -4.5092 5.8153 33 1 1.3759 -3.3106 6.5045 34 1 3.2042 -2.2214 7.7044 35 1 3.2097 -3.9563 8.0922 36 1 6.2482 -4.9272 6.1706 37 1 4.4859 -5.2829 5.7590 38 1 5.0290 -2.6444 -0.9135 39 1 3.3144 -3.2070 -1.1437 40 1 3.2693 0.5285 -1.5795 41 1 4.9962 0.0750 -1.2307 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526121082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:56 Heat of formation + Delta-G solvation = -94.449337 kcal Electronic energy + Delta-G solvation = -22793.868852 eV Core-core repulsion = 19447.124739 eV Total energy + Delta-G solvation = -3346.744113 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.93696 -41.28376 -39.95574 -37.39827 -34.90742 -34.15226 -32.74589 -32.04213 -27.78989 -27.41674 -26.58191 -25.77500 -23.67425 -23.00295 -21.48108 -20.98950 -19.39964 -18.75248 -18.49608 -17.98664 -17.82167 -17.21373 -16.66377 -16.40179 -15.93776 -15.58971 -15.23879 -14.92141 -14.83911 -14.76489 -14.15239 -14.06313 -13.81527 -13.66708 -13.02233 -12.89063 -12.56034 -12.36075 -12.28569 -12.19749 -12.11674 -11.93122 -11.86312 -11.43166 -11.35948 -11.24426 -11.05866 -10.77299 -10.67261 -10.60006 -10.43977 -8.37642 -6.39466 1.16934 1.20241 1.27028 1.33608 1.74792 2.21421 2.74887 2.80417 3.10629 3.41936 3.55647 3.76313 3.78008 3.92761 4.06379 4.14256 4.16124 4.20379 4.23422 4.27264 4.35510 4.38540 4.45045 4.51345 4.54437 4.60963 4.78697 4.92120 4.93364 5.00240 5.11076 5.15807 5.20834 5.24057 5.29306 5.30182 5.38018 5.42062 5.54456 5.59287 6.20286 6.62151 6.79706 7.21972 8.78537 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.022203 B = 0.005110 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.774341 B = 5477.669394 C = 5967.668763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.022 3.978 3 Si 0.918 3.082 4 H -0.262 1.262 5 H -0.295 1.295 6 H -0.232 1.232 7 C -0.485 4.485 8 H 0.045 0.955 9 C -0.020 4.020 10 C 0.073 3.927 11 O -0.340 6.340 12 C 0.456 3.544 13 O -0.546 6.546 14 C -0.040 4.040 15 H 0.118 0.882 16 C -0.112 4.112 17 C -0.113 4.113 18 C -0.089 4.089 19 C -0.130 4.130 20 H 0.107 0.893 21 C -0.158 4.158 22 C -0.165 4.165 23 H 0.096 0.904 24 C 0.050 3.950 25 O -0.390 6.390 26 C 0.025 3.975 27 H 0.267 0.733 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.284 -7.619 13.193 18.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.177 4.177 3 Si 0.744 3.256 4 H -0.188 1.188 5 H -0.222 1.222 6 H -0.156 1.156 7 C -0.522 4.522 8 H 0.063 0.937 9 C -0.021 4.021 10 C -0.001 4.001 11 O -0.255 6.255 12 C 0.301 3.699 13 O -0.437 6.437 14 C -0.059 4.059 15 H 0.135 0.865 16 C -0.150 4.150 17 C -0.150 4.150 18 C -0.126 4.126 19 C -0.148 4.148 20 H 0.125 0.875 21 C -0.195 4.195 22 C -0.183 4.183 23 H 0.114 0.886 24 C -0.027 4.027 25 O -0.309 6.309 26 C -0.051 4.051 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.117 0.883 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.314 -7.298 12.937 18.083 hybrid contribution -0.059 1.373 -0.250 1.397 sum 10.255 -5.925 12.687 17.356 Atomic orbital electron populations 1.70011 1.07935 1.28052 1.51370 1.25728 0.95397 1.02365 0.94168 0.86423 0.80768 0.79879 0.78516 1.18824 1.22216 1.15552 1.20436 0.89391 0.93805 1.48609 0.93661 1.21617 0.95807 0.94743 0.89906 1.23639 0.97760 0.89848 0.88896 1.86591 1.63870 1.52990 1.22064 1.24460 0.77577 0.84851 0.83032 1.90557 1.33742 1.38326 1.81048 1.20626 0.96856 0.97252 0.91173 0.86455 1.21621 0.94536 1.00145 0.98707 1.21589 1.00089 0.99171 0.94163 1.20918 0.91089 1.02757 0.97857 1.21988 0.98967 1.01946 0.91879 0.87485 1.23274 1.03713 0.90075 1.02419 1.21949 0.98518 1.03415 0.94428 0.88608 1.24106 1.00523 0.93946 0.84076 1.89549 1.93803 1.17590 1.30003 1.24365 1.00696 0.90791 0.89265 0.92344 0.92976 0.90729 0.91752 0.92482 0.90219 0.90009 0.91531 0.89020 0.87399 0.87238 0.88316 0.89975 0.91342 0.87855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.44 13.96 21.45 0.30 -57.14 16 2 C 0.02 1.25 5.40 84.66 0.46 1.71 16 3 Si 0.92 42.99 23.75 68.60 1.63 44.62 16 4 H -0.26 -11.68 6.74 99.48 0.67 -11.01 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 6 H -0.23 -9.81 4.90 99.48 0.49 -9.32 16 7 C -0.48 -26.94 8.62 25.60 0.22 -26.72 16 8 H 0.05 2.81 8.06 -2.91 -0.02 2.78 16 9 C -0.02 -0.88 0.51 -52.23 -0.03 -0.91 16 10 C 0.07 3.02 4.60 71.98 0.33 3.35 16 11 O -0.34 -14.05 9.83 -51.43 -0.51 -14.56 16 12 C 0.46 16.78 7.05 71.24 0.50 17.28 16 13 O -0.55 -22.23 15.43 22.00 0.34 -21.89 16 14 C -0.04 -1.11 2.56 -11.57 -0.03 -1.14 16 15 H 0.12 2.88 8.06 -2.39 -0.02 2.86 16 16 C -0.11 -2.98 5.22 30.75 0.16 -2.82 16 17 C -0.11 -2.08 5.69 30.65 0.17 -1.91 16 18 C -0.09 -1.43 5.94 30.25 0.18 -1.25 16 19 C -0.13 -2.33 6.00 -11.63 -0.07 -2.40 16 20 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 21 C -0.16 -2.58 9.66 30.58 0.30 -2.29 16 22 C -0.16 -3.87 5.40 -10.97 -0.06 -3.93 16 23 H 0.10 2.63 7.14 -2.39 -0.02 2.61 16 24 C 0.05 1.97 8.35 72.27 0.60 2.57 16 25 O -0.39 -17.23 12.40 -148.98 -1.85 -19.08 16 26 C 0.03 1.05 6.58 72.28 0.48 1.53 16 27 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 28 H 0.05 2.31 5.67 -2.39 -0.01 2.30 16 29 H 0.07 2.67 8.06 -2.38 -0.02 2.66 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 1.65 8.05 -2.38 -0.02 1.63 16 32 H 0.08 1.29 7.11 -2.39 -0.02 1.27 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.11 1.56 7.26 -2.39 -0.02 1.54 16 38 H 0.10 3.12 8.04 -2.39 -0.02 3.10 16 39 H 0.08 3.29 8.09 -2.39 -0.02 3.27 16 40 H 0.07 3.08 3.76 -2.39 -0.01 3.07 16 41 H 0.10 3.48 8.10 -2.39 -0.02 3.46 16 Total: -1.00 -68.64 320.26 3.90 -64.74 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.77 Total: 20.23 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 3.22 Total: -16.93 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.30 Total: -57.14 kcal Atomic # 8 Polarization: -53.52 SS G_CDS: -2.01 Total: -55.53 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.63 Total: 44.62 kcal Total: -68.64 3.90 -64.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526121082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.705 kcal (2) G-P(sol) polarization free energy of solvation -68.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds