Wall clock time and date at job start Tue Mar 31 2020 01:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00272 * 2 1 4 4 H 1.48499 * 109.47321 * 270.00161 * 3 2 1 5 5 H 1.48501 * 109.47092 * 30.00516 * 3 2 1 6 6 H 1.48506 * 109.47013 * 150.00272 * 3 2 1 7 7 C 1.37877 * 119.99508 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99887 * 173.69966 * 7 2 1 9 9 C 1.50699 * 120.00179 * 353.70255 * 7 2 1 10 10 C 1.53000 * 112.99911 * 295.75824 * 9 7 2 11 11 O 1.45202 * 109.47464 * 299.08381 * 10 9 7 12 12 C 1.34230 * 116.99863 * 181.86113 * 11 10 9 13 13 O 1.20819 * 120.00074 * 356.63007 * 12 11 10 14 14 C 1.50699 * 119.99663 * 176.63083 * 12 11 10 15 15 H 1.08999 * 109.26689 * 25.50218 * 14 12 11 16 16 C 1.52867 * 109.26831 * 265.99599 * 14 12 11 17 17 C 1.53306 * 108.59159 * 184.84353 * 16 14 12 18 18 C 1.52883 * 108.57937 * 74.44424 * 17 16 14 19 19 C 1.52712 * 110.15171 * 305.47983 * 18 17 16 20 20 H 1.09001 * 115.38566 * 232.83082 * 19 18 17 21 21 C 1.53644 * 116.02991 * 90.20212 * 19 18 17 22 22 C 1.52067 * 109.16927 * 144.93440 * 14 12 11 23 23 H 1.08997 * 114.37657 * 286.50154 * 22 14 12 24 24 C 1.54032 * 113.81914 * 67.58887 * 9 7 2 25 25 O 1.44447 * 85.42538 * 91.80961 * 24 9 7 26 26 C 1.44179 * 93.38167 * 24.08777 * 25 24 9 27 27 H 0.97003 * 119.99955 * 5.03534 * 1 2 3 28 28 H 1.08994 * 109.47021 * 179.08008 * 10 9 7 29 29 H 1.09007 * 109.47079 * 59.08169 * 10 9 7 30 30 H 1.09000 * 109.62046 * 65.11533 * 16 14 12 31 31 H 1.09004 * 109.76785 * 304.66124 * 16 14 12 32 32 H 1.09000 * 109.61867 * 314.71513 * 17 16 14 33 33 H 1.08996 * 109.61935 * 194.16956 * 17 16 14 34 34 H 1.08994 * 109.35535 * 185.27233 * 18 17 16 35 35 H 1.09000 * 109.24524 * 65.61329 * 18 17 16 36 36 H 1.08998 * 117.54472 * 355.68976 * 21 19 18 37 37 H 1.09002 * 117.53953 * 140.86637 * 21 19 18 38 38 H 1.08995 * 113.86603 * 205.91326 * 24 9 7 39 39 H 1.08998 * 113.86335 * 337.62194 * 24 9 7 40 40 H 1.09000 * 113.86818 * 221.76471 * 26 25 24 41 41 H 1.09002 * 113.97955 * 90.07281 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0796 -1.1970 -0.1032 9 6 1.2577 -2.4953 0.1420 10 6 0.5535 -2.6355 1.4931 11 8 1.5386 -2.5937 2.5591 12 6 1.0855 -2.7431 3.8137 13 8 -0.1008 -2.8424 4.0198 14 6 2.0566 -2.7869 4.9652 15 1 2.9662 -2.2535 4.6891 16 6 2.4012 -4.2427 5.2795 17 6 3.2919 -4.2758 6.5268 18 6 2.4237 -3.9929 7.7530 19 6 1.6628 -2.6819 7.5678 20 1 1.7732 -1.9593 8.3763 21 6 0.2792 -2.7925 6.9089 22 6 1.4277 -2.1131 6.1747 23 1 1.3732 -1.0266 6.1067 24 6 0.3619 -2.8338 -1.0644 25 8 1.5125 -3.5441 -1.5724 26 6 2.0817 -3.7327 -0.2612 27 1 -0.4850 0.8368 -0.0737 28 1 0.0204 -3.5855 1.5281 29 1 -0.1546 -1.8166 1.6205 30 1 2.9349 -4.6825 4.4370 31 1 1.4869 -4.8056 5.4676 32 1 4.0669 -3.5140 6.4435 33 1 3.7510 -5.2597 6.6227 34 1 3.0583 -3.9207 8.6361 35 1 1.7120 -4.8080 7.8851 36 1 -0.0337 -3.7750 6.5557 37 1 -0.5164 -2.1570 7.2978 38 1 -0.4820 -3.4789 -0.8198 39 1 0.0788 -1.9664 -1.6607 40 1 3.1597 -3.5768 -0.2218 41 1 1.7655 -4.6525 0.2309 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526121085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:59 Heat of formation + Delta-G solvation = -88.057354 kcal Electronic energy + Delta-G solvation = -22807.316386 eV Core-core repulsion = 19460.849451 eV Total energy + Delta-G solvation = -3346.466936 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.45032 -39.31952 -38.46067 -35.53414 -33.21197 -32.89852 -31.34420 -29.82874 -25.84562 -25.37793 -25.00230 -24.04914 -22.74851 -21.72472 -20.21653 -19.01341 -18.33591 -16.93121 -16.59122 -16.28144 -15.57906 -15.50835 -14.87510 -14.40135 -14.37805 -14.17369 -13.93143 -13.88678 -13.43314 -13.05857 -12.53263 -12.28930 -12.01569 -11.92589 -11.63206 -11.37088 -11.19926 -10.98293 -10.92056 -10.79588 -10.46471 -10.43687 -10.21331 -9.96079 -9.83584 -9.76103 -9.38450 -9.31977 -9.04571 -8.73697 -8.32368 -6.16687 -4.20891 2.83426 3.25322 3.27689 3.32369 3.36119 3.92813 4.32964 4.53757 4.65465 4.78433 4.88704 4.91646 5.04589 5.14330 5.16784 5.24485 5.38798 5.46073 5.56519 5.62940 5.81871 5.90439 5.96520 5.97236 6.04278 6.07641 6.09126 6.17789 6.18541 6.26442 6.28851 6.31501 6.40040 6.59840 6.99817 7.15287 7.27588 7.37025 7.41779 7.79036 8.18617 8.54051 8.76205 9.42724 10.90530 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019050 B = 0.005208 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.459143 B = 5374.846464 C = 6026.869859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.486 4.486 8 H 0.066 0.934 9 C 0.033 3.967 10 C 0.081 3.919 11 O -0.335 6.335 12 C 0.456 3.544 13 O -0.516 6.516 14 C -0.048 4.048 15 H 0.105 0.895 16 C -0.112 4.112 17 C -0.116 4.116 18 C -0.089 4.089 19 C -0.149 4.149 20 H 0.102 0.898 21 C -0.156 4.156 22 C -0.132 4.132 23 H 0.102 0.898 24 C 0.050 3.950 25 O -0.390 6.390 26 C 0.030 3.970 27 H 0.265 0.735 28 H 0.035 0.965 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.047 0.953 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.060 -6.589 13.345 15.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.524 4.524 8 H 0.084 0.916 9 C 0.032 3.968 10 C 0.008 3.992 11 O -0.250 6.250 12 C 0.298 3.702 13 O -0.406 6.406 14 C -0.067 4.067 15 H 0.123 0.877 16 C -0.149 4.149 17 C -0.153 4.153 18 C -0.127 4.127 19 C -0.167 4.167 20 H 0.120 0.880 21 C -0.193 4.193 22 C -0.150 4.150 23 H 0.121 0.879 24 C -0.027 4.027 25 O -0.309 6.309 26 C -0.047 4.047 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.065 0.935 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.619 -6.539 13.153 15.128 hybrid contribution -0.004 1.128 0.053 1.129 sum 3.615 -5.411 13.206 14.722 Atomic orbital electron populations 1.69861 1.05940 1.27480 1.49453 1.24970 0.94952 0.99337 0.94406 0.86480 0.79928 0.82829 0.78245 1.20502 1.21151 1.19599 1.20586 0.93456 0.88293 1.50035 0.91587 1.21089 0.92518 0.94583 0.88562 1.23459 0.90448 0.99930 0.85378 1.86522 1.42566 1.80969 1.14912 1.23486 0.88801 0.72952 0.84952 1.90586 1.18217 1.45948 1.85828 1.20232 0.97904 0.98502 0.90079 0.87674 1.21570 1.00665 0.93831 0.98874 1.21563 0.97858 1.01946 0.93943 1.21065 0.98209 0.95405 0.98005 1.22316 0.99818 0.99273 0.95272 0.87962 1.23000 0.90920 1.02741 1.02632 1.21537 1.03281 0.99229 0.91001 0.87948 1.23952 0.88163 0.94151 0.96401 1.89526 1.37362 1.77894 1.26084 1.24032 0.99437 0.97403 0.83842 0.92511 0.94716 0.89376 0.90549 0.91167 0.91177 0.91363 0.91555 0.91625 0.88416 0.89098 0.93465 0.88352 0.90397 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.28 11.24 55.43 0.62 -23.66 16 2 C 0.07 1.75 5.25 -17.82 -0.09 1.66 16 3 Si 0.90 20.90 29.55 -169.99 -5.02 15.88 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.49 -12.92 8.09 -34.44 -0.28 -13.19 16 8 H 0.07 1.76 7.81 -52.48 -0.41 1.35 16 9 C 0.03 0.80 0.57 -154.58 -0.09 0.72 16 10 C 0.08 1.92 4.62 37.16 0.17 2.09 16 11 O -0.33 -7.36 9.99 -39.26 -0.39 -7.75 16 12 C 0.46 8.86 6.93 36.01 0.25 9.11 16 13 O -0.52 -11.16 15.39 -18.74 -0.29 -11.45 16 14 C -0.05 -0.70 2.68 -92.32 -0.25 -0.95 16 15 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 16 C -0.11 -1.35 4.95 -26.64 -0.13 -1.48 16 17 C -0.12 -1.09 5.93 -26.63 -0.16 -1.25 16 18 C -0.09 -0.81 5.83 -26.94 -0.16 -0.97 16 19 C -0.15 -1.58 6.19 -90.79 -0.56 -2.14 16 20 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 21 C -0.16 -1.99 8.68 -26.75 -0.23 -2.23 16 22 C -0.13 -1.78 5.10 -91.81 -0.47 -2.25 16 23 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 24 C 0.05 1.20 7.95 37.64 0.30 1.49 16 25 O -0.39 -9.32 12.41 -35.23 -0.44 -9.76 16 26 C 0.03 0.65 8.34 37.64 0.31 0.96 16 27 H 0.27 6.96 8.32 -40.82 -0.34 6.62 16 28 H 0.03 0.77 8.13 -51.93 -0.42 0.35 16 29 H 0.09 2.33 6.96 -51.93 -0.36 1.97 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.88 7.12 -51.93 -0.37 0.51 16 32 H 0.07 0.65 8.04 -51.93 -0.42 0.23 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.59 8.06 -51.93 -0.42 0.17 16 36 H 0.10 1.33 7.26 -51.93 -0.38 0.95 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 1.02 8.10 -51.93 -0.42 0.60 16 39 H 0.10 2.50 7.48 -51.93 -0.39 2.12 16 40 H 0.08 1.63 8.08 -51.93 -0.42 1.21 16 41 H 0.05 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 331.45 15.07 4.99 4.99 Total: -1.00 -29.28 331.45 -8.43 -37.71 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.52 Total: 2.47 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -1.38 Total: -8.43 kcal Atomic # 7 Polarization: -24.28 SS G_CDS: 0.62 Total: -23.66 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -1.12 Total: -28.96 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.28 -8.43 -37.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526121085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.351 kcal (2) G-P(sol) polarization free energy of solvation -29.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds