Wall clock time and date at job start Tue Mar 31 2020 01:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00272 * 2 1 4 4 H 1.48499 * 109.47321 * 270.00161 * 3 2 1 5 5 H 1.48501 * 109.47092 * 30.00516 * 3 2 1 6 6 H 1.48506 * 109.47013 * 150.00272 * 3 2 1 7 7 C 1.37877 * 119.99508 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99887 * 173.69966 * 7 2 1 9 9 C 1.50699 * 120.00179 * 353.70255 * 7 2 1 10 10 C 1.53000 * 112.99911 * 295.75824 * 9 7 2 11 11 O 1.45202 * 109.47464 * 299.08381 * 10 9 7 12 12 C 1.34230 * 116.99863 * 181.86113 * 11 10 9 13 13 O 1.20819 * 120.00074 * 356.63007 * 12 11 10 14 14 C 1.50699 * 119.99663 * 176.63083 * 12 11 10 15 15 H 1.08999 * 109.26689 * 25.50218 * 14 12 11 16 16 C 1.52867 * 109.26831 * 265.99599 * 14 12 11 17 17 C 1.53306 * 108.59159 * 184.84353 * 16 14 12 18 18 C 1.52883 * 108.57937 * 74.44424 * 17 16 14 19 19 C 1.52712 * 110.15171 * 305.47983 * 18 17 16 20 20 H 1.09001 * 115.38566 * 232.83082 * 19 18 17 21 21 C 1.53644 * 116.02991 * 90.20212 * 19 18 17 22 22 C 1.52067 * 109.16927 * 144.93440 * 14 12 11 23 23 H 1.08997 * 114.37657 * 286.50154 * 22 14 12 24 24 C 1.54032 * 113.81914 * 67.58887 * 9 7 2 25 25 O 1.44447 * 85.42538 * 91.80961 * 24 9 7 26 26 C 1.44179 * 93.38167 * 24.08777 * 25 24 9 27 27 H 0.97003 * 119.99955 * 5.03534 * 1 2 3 28 28 H 1.08994 * 109.47021 * 179.08008 * 10 9 7 29 29 H 1.09007 * 109.47079 * 59.08169 * 10 9 7 30 30 H 1.09000 * 109.62046 * 65.11533 * 16 14 12 31 31 H 1.09004 * 109.76785 * 304.66124 * 16 14 12 32 32 H 1.09000 * 109.61867 * 314.71513 * 17 16 14 33 33 H 1.08996 * 109.61935 * 194.16956 * 17 16 14 34 34 H 1.08994 * 109.35535 * 185.27233 * 18 17 16 35 35 H 1.09000 * 109.24524 * 65.61329 * 18 17 16 36 36 H 1.08998 * 117.54472 * 355.68976 * 21 19 18 37 37 H 1.09002 * 117.53953 * 140.86637 * 21 19 18 38 38 H 1.08995 * 113.86603 * 205.91326 * 24 9 7 39 39 H 1.08998 * 113.86335 * 337.62194 * 24 9 7 40 40 H 1.09000 * 113.86818 * 221.76471 * 26 25 24 41 41 H 1.09002 * 113.97955 * 90.07281 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0796 -1.1970 -0.1032 9 6 1.2577 -2.4953 0.1420 10 6 0.5535 -2.6355 1.4931 11 8 1.5386 -2.5937 2.5591 12 6 1.0855 -2.7431 3.8137 13 8 -0.1008 -2.8424 4.0198 14 6 2.0566 -2.7869 4.9652 15 1 2.9662 -2.2535 4.6891 16 6 2.4012 -4.2427 5.2795 17 6 3.2919 -4.2758 6.5268 18 6 2.4237 -3.9929 7.7530 19 6 1.6628 -2.6819 7.5678 20 1 1.7732 -1.9593 8.3763 21 6 0.2792 -2.7925 6.9089 22 6 1.4277 -2.1131 6.1747 23 1 1.3732 -1.0266 6.1067 24 6 0.3619 -2.8338 -1.0644 25 8 1.5125 -3.5441 -1.5724 26 6 2.0817 -3.7327 -0.2612 27 1 -0.4850 0.8368 -0.0737 28 1 0.0204 -3.5855 1.5281 29 1 -0.1546 -1.8166 1.6205 30 1 2.9349 -4.6825 4.4370 31 1 1.4869 -4.8056 5.4676 32 1 4.0669 -3.5140 6.4435 33 1 3.7510 -5.2597 6.6227 34 1 3.0583 -3.9207 8.6361 35 1 1.7120 -4.8080 7.8851 36 1 -0.0337 -3.7750 6.5557 37 1 -0.5164 -2.1570 7.2978 38 1 -0.4820 -3.4789 -0.8198 39 1 0.0788 -1.9664 -1.6607 40 1 3.1597 -3.5768 -0.2218 41 1 1.7655 -4.6525 0.2309 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526121085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:59 Heat of formation + Delta-G solvation = -103.604731 kcal Electronic energy + Delta-G solvation = -22807.990571 eV Core-core repulsion = 19460.849451 eV Total energy + Delta-G solvation = -3347.141120 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.84072 -41.03561 -39.81768 -37.22349 -34.92615 -34.10671 -32.46149 -31.62419 -27.49202 -27.16919 -26.58122 -25.65936 -23.70779 -22.88950 -21.48348 -20.90073 -19.39947 -18.53339 -18.25923 -17.55943 -17.30159 -17.04684 -16.69373 -16.20593 -16.17122 -15.74974 -15.01024 -14.97699 -14.48206 -14.28801 -13.98769 -13.82443 -13.69898 -13.43105 -13.08090 -12.85128 -12.66965 -12.37776 -12.31356 -12.16537 -11.85586 -11.83107 -11.72691 -11.42091 -11.28603 -11.20239 -10.93833 -10.73421 -10.69415 -10.60725 -10.23408 -8.19502 -6.29327 1.29490 1.39433 1.41431 1.50768 1.83546 2.38557 2.87048 2.98259 3.19602 3.54343 3.66209 3.73856 3.95245 3.99495 4.14713 4.22543 4.23481 4.25468 4.44049 4.45345 4.50267 4.53176 4.58403 4.61894 4.69512 4.78295 4.89919 5.04424 5.05871 5.13421 5.16639 5.20729 5.27978 5.31249 5.34768 5.44515 5.49913 5.50420 5.71680 5.74756 6.21239 6.69879 6.91694 7.36610 8.86450 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019050 B = 0.005208 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.459143 B = 5374.846464 C = 6026.869859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.023 3.977 3 Si 0.952 3.048 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.016 3.984 10 C 0.094 3.906 11 O -0.345 6.345 12 C 0.449 3.551 13 O -0.543 6.543 14 C -0.041 4.041 15 H 0.112 0.888 16 C -0.110 4.110 17 C -0.110 4.110 18 C -0.091 4.091 19 C -0.115 4.115 20 H 0.122 0.878 21 C -0.170 4.170 22 C -0.158 4.158 23 H 0.093 0.907 24 C 0.054 3.946 25 O -0.403 6.403 26 C 0.040 3.960 27 H 0.264 0.736 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.825 -7.401 15.163 17.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.177 4.177 3 Si 0.777 3.223 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.016 3.984 10 C 0.020 3.980 11 O -0.261 6.261 12 C 0.294 3.706 13 O -0.434 6.434 14 C -0.060 4.060 15 H 0.130 0.870 16 C -0.147 4.147 17 C -0.147 4.147 18 C -0.129 4.129 19 C -0.133 4.133 20 H 0.139 0.861 21 C -0.207 4.207 22 C -0.176 4.176 23 H 0.111 0.889 24 C -0.023 4.023 25 O -0.322 6.322 26 C -0.036 4.036 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.398 -7.362 14.977 17.540 hybrid contribution -0.589 1.359 -0.493 1.561 sum 4.810 -6.003 14.484 16.399 Atomic orbital electron populations 1.69967 1.06997 1.27927 1.50151 1.25640 0.95666 1.02157 0.94273 0.85630 0.78949 0.79341 0.78342 1.19984 1.21221 1.18948 1.20825 0.93371 0.89666 1.49998 0.92194 1.21172 0.93295 0.95034 0.88929 1.23097 0.90088 0.98895 0.85933 1.86532 1.42273 1.81477 1.15793 1.24607 0.89541 0.71507 0.84962 1.90565 1.19727 1.47158 1.85948 1.20395 0.96631 1.00711 0.88245 0.86990 1.21623 1.00992 0.91533 1.00593 1.21571 0.97375 1.03479 0.92262 1.21164 0.98484 0.94326 0.98885 1.22479 0.97394 1.00013 0.93404 0.86054 1.23002 0.92001 1.02056 1.03672 1.21585 1.04856 0.98784 0.92369 0.88904 1.23861 0.88826 0.93865 0.95718 1.89498 1.37541 1.77888 1.27318 1.24124 0.99634 0.97319 0.82525 0.92691 0.93677 0.92984 0.90326 0.91998 0.90572 0.89183 0.88985 0.91259 0.89565 0.89177 0.91417 0.90728 0.89572 0.90137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.92 11.24 21.45 0.24 -50.68 16 2 C 0.02 1.22 5.25 84.65 0.44 1.66 16 3 Si 0.95 43.09 29.55 68.60 2.03 45.12 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.50 -26.82 8.09 25.60 0.21 -26.61 16 8 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 9 C 0.02 0.79 0.57 -52.23 -0.03 0.76 16 10 C 0.09 4.49 4.62 71.98 0.33 4.83 16 11 O -0.35 -15.29 9.99 -51.42 -0.51 -15.81 16 12 C 0.45 17.64 6.93 71.24 0.49 18.13 16 13 O -0.54 -24.07 15.39 21.99 0.34 -23.73 16 14 C -0.04 -1.15 2.68 -11.89 -0.03 -1.19 16 15 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 16 C -0.11 -2.44 4.95 30.65 0.15 -2.29 16 17 C -0.11 -1.68 5.93 30.66 0.18 -1.50 16 18 C -0.09 -1.32 5.83 30.46 0.18 -1.14 16 19 C -0.11 -2.15 6.19 -10.91 -0.07 -2.22 16 20 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 21 C -0.17 -4.24 8.68 30.58 0.27 -3.98 16 22 C -0.16 -4.12 5.10 -11.57 -0.06 -4.18 16 23 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 24 C 0.05 2.59 7.95 72.30 0.57 3.17 16 25 O -0.40 -18.99 12.41 -148.98 -1.85 -20.84 16 26 C 0.04 1.71 8.34 72.30 0.60 2.31 16 27 H 0.26 14.18 8.32 -92.71 -0.77 13.41 16 28 H 0.05 2.01 8.13 -2.39 -0.02 1.99 16 29 H 0.05 2.85 6.96 -2.38 -0.02 2.83 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 1.48 7.12 -2.38 -0.02 1.46 16 32 H 0.08 1.12 8.04 -2.39 -0.02 1.10 16 33 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 1.00 8.06 -2.39 -0.02 0.99 16 36 H 0.09 2.34 7.26 -2.39 -0.02 2.32 16 37 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.07 2.91 8.10 -2.39 -0.02 2.89 16 39 H 0.07 3.89 7.48 -2.39 -0.02 3.87 16 40 H 0.09 3.47 8.08 -2.39 -0.02 3.45 16 41 H 0.08 2.95 8.10 -2.39 -0.02 2.93 16 Total: -1.00 -63.65 331.45 4.49 -59.16 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 1.01 Total: 19.03 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 3.24 Total: -12.24 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.24 Total: -50.68 kcal Atomic # 8 Polarization: -58.35 SS G_CDS: -2.02 Total: -60.38 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -63.65 4.49 -59.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526121085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.448 kcal (2) G-P(sol) polarization free energy of solvation -63.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds