Wall clock time and date at job start Tue Mar 31 2020 01:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.62482 * 2 1 4 4 C 1.54983 * 110.56673 * 237.16895 * 2 1 3 5 5 C 1.54894 * 102.33224 * 204.34370 * 4 2 1 6 6 C 1.51851 * 104.42969 * 37.62772 * 5 4 2 7 7 C 1.33082 * 126.33953 * 156.22978 * 6 5 4 8 8 C 1.46953 * 119.99863 * 179.97438 * 7 6 5 9 9 O 1.21530 * 119.99717 * 0.02562 * 8 7 6 10 10 O 1.34799 * 119.99881 * 179.97438 * 8 7 6 11 11 C 1.45204 * 116.99891 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47011 * 180.02562 * 11 10 8 13 13 C 1.50701 * 112.99948 * 62.81329 * 12 11 10 14 14 H 1.08000 * 120.00178 * 245.15896 * 13 12 11 15 15 C 1.37876 * 119.99618 * 65.16164 * 13 12 11 16 16 N 1.31515 * 120.00570 * 5.20792 * 15 13 12 17 17 Si 1.86800 * 119.99794 * 185.21185 * 15 13 12 18 18 H 1.48503 * 109.47288 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47672 * 119.99591 * 17 15 13 20 20 H 1.48507 * 109.47095 * 239.99688 * 17 15 13 21 21 C 1.54034 * 113.81777 * 290.98718 * 12 11 10 22 22 O 1.44436 * 85.42799 * 223.24032 * 21 12 11 23 23 C 1.44174 * 93.38174 * 24.08688 * 22 21 12 24 24 C 1.51449 * 107.31698 * 336.20865 * 6 5 4 25 25 H 1.09001 * 109.46653 * 182.83630 * 1 2 3 26 26 H 1.08994 * 109.47140 * 302.83128 * 1 2 3 27 27 H 1.08999 * 109.47286 * 62.83264 * 1 2 3 28 28 H 1.09000 * 110.83631 * 322.55584 * 4 2 1 29 29 H 1.09004 * 110.83576 * 85.93803 * 4 2 1 30 30 H 1.09000 * 110.44501 * 156.36178 * 5 4 2 31 31 H 1.08997 * 110.44644 * 278.76802 * 5 4 2 32 32 H 1.07997 * 120.00023 * 359.97438 * 7 6 5 33 33 H 1.09000 * 109.46914 * 300.00472 * 11 10 8 34 34 H 1.09003 * 109.46492 * 60.00269 * 11 10 8 35 35 H 0.96996 * 120.00230 * 180.02562 * 16 15 13 36 36 H 1.09003 * 113.86190 * 337.34683 * 21 12 11 37 37 H 1.08995 * 113.86575 * 109.04686 * 21 12 11 38 38 H 1.09001 * 113.87086 * 221.77214 * 23 22 21 39 39 H 1.09007 * 113.98535 * 90.07441 * 23 22 21 40 40 H 1.09000 * 109.98325 * 241.00871 * 24 6 5 41 41 H 1.08996 * 109.98235 * 119.70397 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9140 1.0201 0.0000 4 6 2.0745 -0.7867 -1.2193 5 6 3.4815 -1.2162 -0.7344 6 6 3.2912 -1.5444 0.7360 7 6 4.0546 -2.3511 1.4691 8 6 3.7413 -2.5699 2.8881 9 8 2.7849 -2.0146 3.3919 10 8 4.5143 -3.3875 3.6306 11 6 4.1458 -3.5563 5.0250 12 6 5.1316 -4.5115 5.7008 13 6 6.5433 -3.9843 5.7198 14 1 7.3177 -4.4943 5.1660 15 6 6.8462 -2.8510 6.4441 16 7 5.9285 -2.2886 7.1999 17 14 8.5602 -2.1140 6.3520 18 1 9.4011 -2.9291 5.4388 19 1 8.4744 -0.7236 5.8374 20 1 9.1681 -2.1037 7.7069 21 6 5.0183 -5.9687 5.2148 22 8 5.1365 -6.3217 6.6104 23 6 4.6478 -5.0431 7.0632 24 6 2.0721 -0.7832 1.2136 25 1 -0.3633 -1.0264 0.0509 26 1 -0.3633 0.5571 0.8635 27 1 -0.3634 0.4692 -0.9143 28 1 1.4534 -1.6580 -1.4272 29 1 2.1431 -0.1434 -2.0965 30 1 3.8200 -2.0968 -1.2803 31 1 4.1919 -0.3983 -0.8550 32 1 4.9043 -2.8448 1.0213 33 1 4.1742 -2.5897 5.5278 34 1 3.1388 -3.9689 5.0872 35 1 6.1415 -1.4911 7.7092 36 1 4.0500 -6.2140 4.7784 37 1 5.8588 -6.2961 4.6030 38 1 5.1951 -4.6379 7.9142 39 1 3.5663 -5.0030 7.1933 40 1 2.3524 -0.0918 2.0082 41 1 1.3160 -1.4801 1.5752 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526129083.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:59 Heat of formation + Delta-G solvation = -101.608874 kcal Electronic energy + Delta-G solvation = -22127.613773 eV Core-core repulsion = 18780.559200 eV Total energy + Delta-G solvation = -3347.054574 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.83460 -39.12288 -38.28784 -35.55040 -32.92335 -32.76809 -30.16185 -29.74534 -27.26517 -25.48641 -25.29611 -24.63956 -23.69850 -20.94969 -20.25203 -19.01539 -18.25281 -17.00726 -16.33779 -15.91006 -15.60996 -15.38440 -14.86495 -14.54058 -14.32913 -14.23423 -13.89081 -13.81281 -13.17808 -12.99313 -12.46146 -12.31972 -12.13287 -11.91779 -11.73339 -11.60850 -11.32396 -11.02205 -10.98577 -10.76173 -10.72648 -10.67995 -10.43546 -9.97906 -9.87719 -9.47529 -9.34426 -9.08841 -9.00783 -8.72384 -8.29499 -6.16535 -4.19639 1.43604 3.25773 3.33994 3.38393 3.44749 3.51807 4.34110 4.36503 4.50881 4.73725 4.90706 5.03993 5.13140 5.19393 5.22761 5.33575 5.39809 5.51617 5.61858 5.69550 5.73165 5.81874 5.90901 5.96575 5.99767 6.11003 6.18918 6.20805 6.26973 6.33790 6.39976 6.46900 6.55147 6.63192 7.02187 7.17960 7.29970 7.39501 7.42289 7.79949 8.20585 8.55565 8.78132 9.44250 10.91703 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020052 B = 0.004287 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.058774 B = 6529.682331 C = 7124.522523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 H 0.076 0.924 4 C -0.119 4.119 5 C -0.098 4.098 6 C -0.038 4.038 7 C -0.185 4.185 8 C 0.485 3.515 9 O -0.525 6.525 10 O -0.333 6.333 11 C 0.083 3.917 12 C 0.033 3.967 13 C -0.486 4.486 14 H 0.067 0.933 15 C 0.065 3.935 16 N -0.889 5.889 17 Si 0.899 3.101 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.030 3.970 22 O -0.390 6.390 23 C 0.051 3.949 24 C -0.092 4.092 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.139 0.861 33 H 0.088 0.912 34 H 0.035 0.965 35 H 0.264 0.736 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.047 0.953 40 H 0.086 0.914 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.417 3.586 -14.858 16.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 H 0.094 0.906 4 C -0.157 4.157 5 C -0.135 4.135 6 C -0.039 4.039 7 C -0.204 4.204 8 C 0.332 3.668 9 O -0.418 6.418 10 O -0.248 6.248 11 C 0.009 3.991 12 C 0.032 3.968 13 C -0.523 4.523 14 H 0.085 0.915 15 C -0.137 4.137 16 N -0.527 5.527 17 Si 0.726 3.274 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.047 4.047 22 O -0.309 6.309 23 C -0.026 4.026 24 C -0.129 4.129 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.157 0.843 33 H 0.106 0.894 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.065 0.935 40 H 0.104 0.896 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.611 3.637 -14.394 16.683 hybrid contribution 0.756 0.698 0.118 1.035 sum -6.855 4.335 -14.276 16.419 Atomic orbital electron populations 1.21784 0.94736 1.01976 1.01550 1.22076 0.95844 0.99317 0.94863 0.90577 1.22603 0.95412 1.00050 0.97586 1.21563 0.98244 1.02036 0.91684 1.22915 0.93927 0.91724 0.95335 1.21347 1.03273 1.04562 0.91220 1.21353 0.80533 0.76946 0.87980 1.90769 1.29097 1.47913 1.73987 1.86590 1.53101 1.59650 1.25436 1.23459 0.96288 1.03562 0.75811 1.21094 0.96058 0.89050 0.90587 1.20642 0.91870 1.10010 1.29818 0.91529 1.24972 0.97639 0.96577 0.94552 1.69890 1.33670 1.21115 1.28017 0.86415 0.84002 0.79020 0.77931 1.19510 1.20941 1.20923 1.24074 0.99111 0.96654 0.84840 1.89521 1.85529 1.36501 1.19327 1.23894 0.96233 0.81778 1.00737 1.21440 0.95335 0.98729 0.97357 0.92528 0.92495 0.92759 0.91041 0.91082 0.90248 0.89386 0.84305 0.89404 0.94630 0.92612 0.92840 0.90352 0.88355 0.93486 0.89551 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.15 37.16 0.34 -0.90 16 2 C -0.10 -0.99 3.49 -88.90 -0.31 -1.30 16 3 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.12 -0.99 6.38 -24.69 -0.16 -1.15 16 5 C -0.10 -0.92 6.64 -26.32 -0.17 -1.10 16 6 C -0.04 -0.50 6.15 -100.21 -0.62 -1.12 16 7 C -0.19 -2.87 10.06 -37.85 -0.38 -3.25 16 8 C 0.49 9.77 7.90 34.26 0.27 10.04 16 9 O -0.52 -11.39 13.90 -19.29 -0.27 -11.65 16 10 O -0.33 -7.49 10.02 -40.76 -0.41 -7.90 16 11 C 0.08 1.97 4.64 37.16 0.17 2.14 16 12 C 0.03 0.80 0.56 -154.58 -0.09 0.72 16 13 C -0.49 -13.05 8.13 -34.44 -0.28 -13.33 16 14 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 15 C 0.06 1.74 5.24 -17.82 -0.09 1.65 16 16 N -0.89 -24.39 11.22 55.43 0.62 -23.76 16 17 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C 0.03 0.67 8.34 37.64 0.31 0.98 16 22 O -0.39 -9.42 12.41 -35.23 -0.44 -9.86 16 23 C 0.05 1.21 7.92 37.64 0.30 1.51 16 24 C -0.09 -1.20 4.40 -26.85 -0.12 -1.32 16 25 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.58 8.05 -51.93 -0.42 0.17 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.14 1.87 8.06 -52.49 -0.42 1.44 16 33 H 0.09 2.34 6.96 -51.93 -0.36 1.98 16 34 H 0.04 0.80 8.12 -51.93 -0.42 0.38 16 35 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.05 1.06 8.10 -51.93 -0.42 0.64 16 37 H 0.08 1.67 8.08 -51.93 -0.42 1.25 16 38 H 0.10 2.53 7.43 -51.93 -0.39 2.14 16 39 H 0.05 1.03 8.09 -51.93 -0.42 0.61 16 40 H 0.09 1.29 7.69 -51.93 -0.40 0.89 16 41 H 0.09 1.27 7.30 -51.93 -0.38 0.89 16 LS Contribution 338.36 15.07 5.10 5.10 Total: -1.00 -29.58 338.36 -7.79 -37.36 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.55 Total: 1.11 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -0.82 Total: -6.42 kcal Atomic # 7 Polarization: -24.39 SS G_CDS: 0.62 Total: -23.76 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -1.11 Total: -29.42 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.58 -7.79 -37.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526129083.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.245 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds