Wall clock time and date at job start Tue Mar 31 2020 01:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.62482 * 2 1 4 4 C 1.54983 * 110.56673 * 237.16895 * 2 1 3 5 5 C 1.54894 * 102.33224 * 204.34370 * 4 2 1 6 6 C 1.51851 * 104.42969 * 37.62772 * 5 4 2 7 7 C 1.33082 * 126.33953 * 156.22978 * 6 5 4 8 8 C 1.46953 * 119.99863 * 179.97438 * 7 6 5 9 9 O 1.21530 * 119.99717 * 0.02562 * 8 7 6 10 10 O 1.34799 * 119.99881 * 179.97438 * 8 7 6 11 11 C 1.45204 * 116.99891 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47011 * 180.02562 * 11 10 8 13 13 C 1.50701 * 112.99948 * 62.81329 * 12 11 10 14 14 H 1.08000 * 120.00178 * 245.15896 * 13 12 11 15 15 C 1.37876 * 119.99618 * 65.16164 * 13 12 11 16 16 N 1.31515 * 120.00570 * 5.20792 * 15 13 12 17 17 Si 1.86800 * 119.99794 * 185.21185 * 15 13 12 18 18 H 1.48503 * 109.47288 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47672 * 119.99591 * 17 15 13 20 20 H 1.48507 * 109.47095 * 239.99688 * 17 15 13 21 21 C 1.54034 * 113.81777 * 290.98718 * 12 11 10 22 22 O 1.44436 * 85.42799 * 223.24032 * 21 12 11 23 23 C 1.44174 * 93.38174 * 24.08688 * 22 21 12 24 24 C 1.51449 * 107.31698 * 336.20865 * 6 5 4 25 25 H 1.09001 * 109.46653 * 182.83630 * 1 2 3 26 26 H 1.08994 * 109.47140 * 302.83128 * 1 2 3 27 27 H 1.08999 * 109.47286 * 62.83264 * 1 2 3 28 28 H 1.09000 * 110.83631 * 322.55584 * 4 2 1 29 29 H 1.09004 * 110.83576 * 85.93803 * 4 2 1 30 30 H 1.09000 * 110.44501 * 156.36178 * 5 4 2 31 31 H 1.08997 * 110.44644 * 278.76802 * 5 4 2 32 32 H 1.07997 * 120.00023 * 359.97438 * 7 6 5 33 33 H 1.09000 * 109.46914 * 300.00472 * 11 10 8 34 34 H 1.09003 * 109.46492 * 60.00269 * 11 10 8 35 35 H 0.96996 * 120.00230 * 180.02562 * 16 15 13 36 36 H 1.09003 * 113.86190 * 337.34683 * 21 12 11 37 37 H 1.08995 * 113.86575 * 109.04686 * 21 12 11 38 38 H 1.09001 * 113.87086 * 221.77214 * 23 22 21 39 39 H 1.09007 * 113.98535 * 90.07441 * 23 22 21 40 40 H 1.09000 * 109.98325 * 241.00871 * 24 6 5 41 41 H 1.08996 * 109.98235 * 119.70397 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9140 1.0201 0.0000 4 6 2.0745 -0.7867 -1.2193 5 6 3.4815 -1.2162 -0.7344 6 6 3.2912 -1.5444 0.7360 7 6 4.0546 -2.3511 1.4691 8 6 3.7413 -2.5699 2.8881 9 8 2.7849 -2.0146 3.3919 10 8 4.5143 -3.3875 3.6306 11 6 4.1458 -3.5563 5.0250 12 6 5.1316 -4.5115 5.7008 13 6 6.5433 -3.9843 5.7198 14 1 7.3177 -4.4943 5.1660 15 6 6.8462 -2.8510 6.4441 16 7 5.9285 -2.2886 7.1999 17 14 8.5602 -2.1140 6.3520 18 1 9.4011 -2.9291 5.4388 19 1 8.4744 -0.7236 5.8374 20 1 9.1681 -2.1037 7.7069 21 6 5.0183 -5.9687 5.2148 22 8 5.1365 -6.3217 6.6104 23 6 4.6478 -5.0431 7.0632 24 6 2.0721 -0.7832 1.2136 25 1 -0.3633 -1.0264 0.0509 26 1 -0.3633 0.5571 0.8635 27 1 -0.3634 0.4692 -0.9143 28 1 1.4534 -1.6580 -1.4272 29 1 2.1431 -0.1434 -2.0965 30 1 3.8200 -2.0968 -1.2803 31 1 4.1919 -0.3983 -0.8550 32 1 4.9043 -2.8448 1.0213 33 1 4.1742 -2.5897 5.5278 34 1 3.1388 -3.9689 5.0872 35 1 6.1415 -1.4911 7.7092 36 1 4.0500 -6.2140 4.7784 37 1 5.8588 -6.2961 4.6030 38 1 5.1951 -4.6379 7.9142 39 1 3.5663 -5.0030 7.1933 40 1 2.3524 -0.0918 2.0082 41 1 1.3160 -1.4801 1.5752 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526129083.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:58 Heat of formation + Delta-G solvation = -117.671599 kcal Electronic energy + Delta-G solvation = -22128.310305 eV Core-core repulsion = 18780.559200 eV Total energy + Delta-G solvation = -3347.751106 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.48638 -40.81334 -39.38290 -37.21717 -34.91645 -33.81949 -31.86915 -30.79953 -28.37683 -27.32623 -27.11703 -26.21682 -24.98304 -22.32852 -21.04914 -20.92659 -19.51448 -18.60930 -18.15833 -17.37375 -17.13999 -16.81476 -16.56726 -16.21951 -16.14641 -15.82839 -15.24582 -14.59840 -14.55021 -14.00729 -13.92465 -13.87360 -13.59008 -13.42203 -13.10073 -12.88580 -12.63470 -12.52736 -12.39266 -12.34221 -11.81233 -11.77458 -11.71323 -11.52838 -11.41729 -11.25855 -11.10852 -10.93317 -10.71416 -10.23172 -10.20498 -8.20643 -6.29632 0.18056 1.38994 1.41737 1.52843 1.94038 2.04309 2.39400 2.97952 3.20386 3.39292 3.68259 3.85662 3.98677 4.13705 4.22484 4.25882 4.34406 4.44266 4.45814 4.46914 4.56050 4.58024 4.67904 4.74979 4.85338 4.91224 4.98652 5.02907 5.13289 5.15587 5.17628 5.20852 5.31515 5.40198 5.44562 5.45694 5.50933 5.53442 5.71073 5.74081 6.21338 6.70011 6.92709 7.36573 8.86514 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020052 B = 0.004287 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.058774 B = 6529.682331 C = 7124.522523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.084 0.916 4 C -0.112 4.112 5 C -0.095 4.095 6 C -0.015 4.015 7 C -0.215 4.215 8 C 0.476 3.524 9 O -0.552 6.552 10 O -0.345 6.345 11 C 0.096 3.904 12 C 0.017 3.983 13 C -0.503 4.503 14 H 0.059 0.941 15 C 0.022 3.978 16 N -0.911 5.911 17 Si 0.955 3.045 18 H -0.265 1.265 19 H -0.283 1.283 20 H -0.279 1.279 21 C 0.040 3.960 22 O -0.403 6.403 23 C 0.055 3.945 24 C -0.100 4.100 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.160 0.840 33 H 0.053 0.947 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.336 3.932 -17.716 19.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.103 0.897 4 C -0.149 4.149 5 C -0.132 4.132 6 C -0.015 4.015 7 C -0.233 4.233 8 C 0.325 3.675 9 O -0.447 6.447 10 O -0.260 6.260 11 C 0.021 3.979 12 C 0.016 3.984 13 C -0.540 4.540 14 H 0.078 0.922 15 C -0.178 4.178 16 N -0.549 5.549 17 Si 0.780 3.220 18 H -0.189 1.189 19 H -0.209 1.209 20 H -0.205 1.205 21 C -0.036 4.036 22 O -0.322 6.322 23 C -0.022 4.022 24 C -0.137 4.137 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.178 0.822 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.530 3.974 -17.266 19.251 hybrid contribution 0.634 0.644 0.967 1.324 sum -6.895 4.618 -16.299 18.290 Atomic orbital electron populations 1.21783 0.94058 1.01858 1.02297 1.22079 0.96431 0.99384 0.93745 0.89737 1.22631 0.94350 1.00408 0.97558 1.21725 0.99525 1.03530 0.88404 1.23421 0.92053 0.88647 0.97418 1.21363 1.05681 1.07557 0.88722 1.22271 0.79817 0.75908 0.89478 1.90750 1.30209 1.48885 1.74822 1.86585 1.54030 1.60711 1.24682 1.23096 0.96570 1.01538 0.76673 1.21169 0.95274 0.90587 0.91358 1.20868 0.92914 1.10419 1.29801 0.92248 1.25653 1.00869 0.96965 0.94329 1.69991 1.35141 1.21308 1.28504 0.85542 0.80263 0.78129 0.78021 1.18859 1.20882 1.20512 1.24160 1.00866 0.94477 0.84108 1.89492 1.85830 1.36347 1.20521 1.23808 0.97044 0.81657 0.99731 1.21520 0.95273 0.98375 0.98522 0.92955 0.93307 0.90636 0.90673 0.88349 0.88187 0.87567 0.82216 0.92904 0.93721 0.92703 0.90179 0.89579 0.90672 0.91425 0.92075 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.15 71.98 0.66 -1.56 16 2 C -0.10 -1.68 3.49 -9.68 -0.03 -1.71 16 3 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.11 -1.42 6.38 31.92 0.20 -1.22 16 5 C -0.10 -1.42 6.64 30.86 0.21 -1.22 16 6 C -0.01 -0.36 6.15 -17.00 -0.10 -0.47 16 7 C -0.21 -6.51 10.06 23.40 0.24 -6.27 16 8 C 0.48 19.60 7.90 70.11 0.55 20.15 16 9 O -0.55 -24.93 13.90 19.74 0.27 -24.65 16 10 O -0.34 -15.80 10.02 -57.11 -0.57 -16.37 16 11 C 0.10 4.67 4.64 71.98 0.33 5.00 16 12 C 0.02 0.83 0.56 -52.23 -0.03 0.80 16 13 C -0.50 -27.32 8.13 25.60 0.21 -27.11 16 14 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 15 C 0.02 1.18 5.24 84.65 0.44 1.63 16 16 N -0.91 -51.18 11.22 21.45 0.24 -50.94 16 17 Si 0.95 43.49 29.54 68.60 2.03 45.52 16 18 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 C 0.04 1.74 8.34 72.29 0.60 2.35 16 22 O -0.40 -19.28 12.41 -148.98 -1.85 -21.12 16 23 C 0.05 2.65 7.92 72.30 0.57 3.22 16 24 C -0.10 -2.59 4.40 30.52 0.13 -2.45 16 25 H 0.05 0.85 8.07 -2.39 -0.02 0.83 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 0.94 8.05 -2.39 -0.02 0.92 16 29 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 33 H 0.05 2.93 6.96 -2.39 -0.02 2.91 16 34 H 0.04 2.04 8.12 -2.39 -0.02 2.02 16 35 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 36 H 0.08 3.04 8.10 -2.39 -0.02 3.02 16 37 H 0.09 3.57 8.08 -2.39 -0.02 3.55 16 38 H 0.07 3.96 7.43 -2.39 -0.02 3.95 16 39 H 0.07 2.96 8.09 -2.38 -0.02 2.94 16 40 H 0.06 1.89 7.69 -2.39 -0.02 1.87 16 41 H 0.07 2.08 7.30 -2.39 -0.02 2.07 16 Total: -1.00 -65.33 338.36 5.11 -60.23 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 1.00 Total: 16.21 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 3.98 Total: -8.87 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: 0.24 Total: -50.94 kcal Atomic # 8 Polarization: -60.00 SS G_CDS: -2.15 Total: -62.14 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -65.33 5.11 -60.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526129083.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.447 kcal (2) G-P(sol) polarization free energy of solvation -65.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds