Wall clock time and date at job start Tue Mar 31 2020 01:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.50523 * 2 1 4 4 C 1.54988 * 110.56870 * 122.75691 * 2 1 3 5 5 C 1.54885 * 102.33149 * 155.64976 * 4 2 1 6 6 C 1.51841 * 104.43529 * 322.37430 * 5 4 2 7 7 C 1.33087 * 126.34261 * 203.77085 * 6 5 4 8 8 C 1.46954 * 119.99748 * 0.02562 * 7 6 5 9 9 O 1.21540 * 120.00263 * 0.02562 * 8 7 6 10 10 O 1.34802 * 119.99861 * 179.97438 * 8 7 6 11 11 C 1.45202 * 116.99705 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46719 * 180.02562 * 11 10 8 13 13 C 1.50700 * 113.00335 * 296.94199 * 12 11 10 14 14 H 1.08004 * 119.99919 * 105.27277 * 13 12 11 15 15 C 1.37881 * 119.99762 * 285.55499 * 13 12 11 16 16 N 1.31511 * 120.00043 * 6.49858 * 15 13 12 17 17 Si 1.86801 * 119.99763 * 186.49956 * 15 13 12 18 18 H 1.48505 * 109.46608 * 89.99993 * 17 15 13 19 19 H 1.48493 * 109.46937 * 209.99915 * 17 15 13 20 20 H 1.48499 * 109.47252 * 330.00270 * 17 15 13 21 21 C 1.54036 * 113.92418 * 68.87542 * 12 11 10 22 22 O 1.44175 * 85.51867 * 91.65842 * 21 12 11 23 23 C 1.44178 * 93.34004 * 24.19140 * 22 21 12 24 24 C 1.51447 * 107.31768 * 24.02891 * 6 5 4 25 25 H 1.08993 * 109.47161 * 297.24300 * 1 2 3 26 26 H 1.08996 * 109.47338 * 57.24457 * 1 2 3 27 27 H 1.09005 * 109.47327 * 177.24648 * 1 2 3 28 28 H 1.08999 * 110.83065 * 37.44151 * 4 2 1 29 29 H 1.08994 * 111.00048 * 273.93742 * 4 2 1 30 30 H 1.08998 * 110.44049 * 203.63153 * 5 4 2 31 31 H 1.09001 * 110.44536 * 81.11197 * 5 4 2 32 32 H 1.07996 * 120.00059 * 180.02562 * 7 6 5 33 33 H 1.08996 * 109.47161 * 60.00492 * 11 10 8 34 34 H 1.08999 * 109.47127 * 300.00235 * 11 10 8 35 35 H 0.96995 * 120.00076 * 179.97438 * 16 15 13 36 36 H 1.09003 * 113.86160 * 205.80678 * 21 12 11 37 37 H 1.08999 * 113.86646 * 337.51090 * 21 12 11 38 38 H 1.09000 * 113.86626 * 221.65820 * 23 22 21 39 39 H 1.09003 * 113.86500 * 89.95785 * 23 22 21 40 40 H 1.09002 * 109.98106 * 118.74738 * 24 6 5 41 41 H 1.08998 * 109.98797 * 240.05587 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9118 1.0209 0.0000 4 6 2.0745 -0.7851 1.2203 5 6 3.4814 -1.2153 0.7359 6 6 3.2911 -1.5454 -0.7339 7 6 4.0544 -2.3531 -1.4661 8 6 5.2106 -3.0243 -0.8559 9 8 5.4694 -2.8421 0.3176 10 8 5.9835 -3.8428 -1.5973 11 6 7.1081 -4.4722 -0.9285 12 6 7.8624 -5.3573 -1.9228 13 6 7.0270 -6.4955 -2.4496 14 1 6.6347 -6.4571 -3.4552 15 6 6.7588 -7.5833 -1.6459 16 7 7.1215 -7.5723 -0.3819 17 14 5.8801 -9.0726 -2.3527 18 1 6.8812 -10.0294 -2.8890 19 1 5.0873 -9.7325 -1.2845 20 1 4.9736 -8.6397 -3.4463 21 6 8.6055 -4.5715 -3.0197 22 8 9.7332 -4.6057 -2.1220 23 6 9.2610 -5.7843 -1.4388 24 6 2.0755 -0.7802 -1.2141 25 1 -0.3633 0.4704 0.9136 26 1 -0.3634 0.5560 -0.8642 27 1 -0.3634 -1.0265 -0.0494 28 1 1.4534 -1.6561 1.4294 29 1 2.1463 -0.1426 2.0978 30 1 3.8198 -2.0952 1.2830 31 1 4.1914 -0.3966 0.8533 32 1 3.8242 -2.5154 -2.5087 33 1 6.7442 -5.0824 -0.1019 34 1 7.7792 -3.7037 -0.5449 35 1 6.9324 -8.3373 0.1836 36 1 8.7573 -5.1354 -3.9401 37 1 8.2086 -3.5710 -3.1912 38 1 9.3840 -5.7456 -0.3565 39 1 9.6130 -6.7185 -1.8765 40 1 2.3602 -0.0883 -2.0068 41 1 1.3185 -1.4744 -1.5790 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526129086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:04 Heat of formation + Delta-G solvation = -101.813151 kcal Electronic energy + Delta-G solvation = -22048.501727 eV Core-core repulsion = 18701.438295 eV Total energy + Delta-G solvation = -3347.063432 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.87305 -39.17468 -38.29079 -35.56099 -32.96033 -32.73788 -30.06217 -29.64240 -27.58227 -25.54031 -25.32655 -24.34593 -23.72802 -21.22852 -20.14353 -18.73116 -18.18683 -17.08666 -16.66300 -16.02764 -15.48468 -15.22654 -14.84500 -14.75490 -14.44957 -14.11721 -13.83729 -13.72769 -13.28821 -13.02254 -12.40418 -12.28602 -12.11653 -11.82472 -11.67521 -11.36106 -11.23408 -11.07632 -11.03364 -10.91169 -10.90839 -10.67384 -10.59915 -10.44108 -9.73542 -9.58266 -9.14852 -9.04375 -8.78454 -8.61582 -8.46855 -6.15729 -4.20588 1.43676 3.24983 3.32532 3.35351 3.42566 3.51064 4.33633 4.38678 4.52007 4.69676 4.93349 4.99141 5.15049 5.20543 5.27441 5.31609 5.39055 5.50342 5.54870 5.63729 5.71773 5.87020 5.90491 5.97049 6.00202 6.11527 6.20301 6.24643 6.31933 6.37652 6.45343 6.51881 6.57975 6.78923 6.82246 7.15908 7.27587 7.42343 7.45794 7.79912 8.16579 8.55224 8.77374 9.44825 10.92241 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019806 B = 0.004176 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.339697 B = 6703.720953 C = 7447.185210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.077 0.923 4 C -0.123 4.123 5 C -0.106 4.106 6 C -0.037 4.037 7 C -0.185 4.185 8 C 0.489 3.511 9 O -0.524 6.524 10 O -0.335 6.335 11 C 0.104 3.896 12 C 0.021 3.979 13 C -0.511 4.511 14 H 0.065 0.935 15 C 0.067 3.933 16 N -0.889 5.889 17 Si 0.895 3.105 18 H -0.279 1.279 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.036 3.964 22 O -0.413 6.413 23 C 0.070 3.930 24 C -0.096 4.096 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.086 0.914 34 H 0.041 0.959 35 H 0.264 0.736 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.316 12.402 -0.131 16.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.095 0.905 4 C -0.160 4.160 5 C -0.143 4.143 6 C -0.037 4.037 7 C -0.204 4.204 8 C 0.335 3.665 9 O -0.417 6.417 10 O -0.250 6.250 11 C 0.031 3.969 12 C 0.020 3.980 13 C -0.549 4.549 14 H 0.083 0.917 15 C -0.135 4.135 16 N -0.526 5.526 17 Si 0.723 3.277 18 H -0.205 1.205 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.041 4.041 22 O -0.332 6.332 23 C -0.007 4.007 24 C -0.133 4.133 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.103 0.897 32 H 0.156 0.844 33 H 0.104 0.896 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.980 12.462 0.401 15.971 hybrid contribution -0.573 -1.099 -0.251 1.265 sum -10.553 11.363 0.150 15.508 Atomic orbital electron populations 1.21807 0.94704 1.02003 1.01652 1.21991 0.95617 0.99290 0.94745 0.90453 1.22666 0.96250 0.99819 0.97277 1.21772 0.96768 1.03250 0.92477 1.22912 0.93182 0.91492 0.96140 1.21298 0.96160 1.01822 1.01157 1.21313 0.82992 0.77391 0.84786 1.90745 1.71052 1.62429 1.17426 1.86545 1.39962 1.55193 1.43326 1.23000 0.83769 0.93550 0.96624 1.20921 0.93168 0.92990 0.90900 1.20932 1.32934 1.01191 0.99793 0.91670 1.24976 0.95305 0.98672 0.94594 1.69901 1.47032 1.30808 1.04869 0.86530 0.79678 0.82649 0.78835 1.20507 1.21250 1.19752 1.24025 0.85799 0.99632 0.94659 1.89443 1.47038 1.46277 1.50467 1.23771 0.92631 0.87403 0.96905 1.21406 0.95042 0.98437 0.98374 0.92524 0.92668 0.92442 0.91170 0.91163 0.88190 0.89741 0.84370 0.89570 0.94100 0.92580 0.91079 0.91345 0.90720 0.90686 0.89934 0.89739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.15 37.16 0.34 -0.70 16 2 C -0.10 -0.84 3.48 -88.90 -0.31 -1.15 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 4 C -0.12 -1.23 6.38 -24.69 -0.16 -1.38 16 5 C -0.11 -1.39 5.41 -26.33 -0.14 -1.54 16 6 C -0.04 -0.48 6.15 -100.21 -0.62 -1.10 16 7 C -0.19 -2.89 10.06 -37.85 -0.38 -3.27 16 8 C 0.49 9.92 7.91 34.26 0.27 10.19 16 9 O -0.52 -11.47 13.55 -19.30 -0.26 -11.73 16 10 O -0.34 -7.63 10.03 -40.77 -0.41 -8.04 16 11 C 0.10 2.53 4.68 37.16 0.17 2.71 16 12 C 0.02 0.51 0.57 -154.58 -0.09 0.42 16 13 C -0.51 -13.44 8.20 -34.44 -0.28 -13.72 16 14 H 0.07 1.71 7.82 -52.48 -0.41 1.30 16 15 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 16 N -0.89 -24.23 11.77 55.43 0.65 -23.57 16 17 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 C 0.04 0.79 8.32 37.61 0.31 1.10 16 22 O -0.41 -9.63 12.37 -35.23 -0.44 -10.07 16 23 C 0.07 1.66 7.44 37.61 0.28 1.94 16 24 C -0.10 -0.92 6.21 -26.84 -0.17 -1.09 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.42 8.08 -51.93 -0.42 0.01 16 28 H 0.07 0.71 8.05 -51.93 -0.42 0.29 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.10 1.60 6.27 -51.93 -0.33 1.27 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.09 2.32 7.29 -51.93 -0.38 1.94 16 34 H 0.04 0.97 8.08 -51.93 -0.42 0.55 16 35 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.07 1.49 8.09 -51.93 -0.42 1.07 16 37 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 38 H 0.07 1.78 8.10 -51.93 -0.42 1.36 16 39 H 0.08 1.80 8.09 -51.93 -0.42 1.38 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.76 7.79 -51.93 -0.40 0.35 16 LS Contribution 338.81 15.07 5.11 5.11 Total: -1.00 -29.07 338.81 -7.78 -36.86 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.55 Total: 1.72 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -0.86 Total: -5.90 kcal Atomic # 7 Polarization: -24.23 SS G_CDS: 0.65 Total: -23.57 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -1.11 Total: -29.83 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.07 -7.78 -36.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526129086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.957 kcal (2) G-P(sol) polarization free energy of solvation -29.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds