Wall clock time and date at job start Tue Mar 31 2020 01:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.50523 * 2 1 4 4 C 1.54988 * 110.56870 * 122.75691 * 2 1 3 5 5 C 1.54885 * 102.33149 * 155.64976 * 4 2 1 6 6 C 1.51841 * 104.43529 * 322.37430 * 5 4 2 7 7 C 1.33087 * 126.34261 * 203.77085 * 6 5 4 8 8 C 1.46954 * 119.99748 * 0.02562 * 7 6 5 9 9 O 1.21540 * 120.00263 * 0.02562 * 8 7 6 10 10 O 1.34802 * 119.99861 * 179.97438 * 8 7 6 11 11 C 1.45202 * 116.99705 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46719 * 180.02562 * 11 10 8 13 13 C 1.50700 * 113.00335 * 296.94199 * 12 11 10 14 14 H 1.08004 * 119.99919 * 105.27277 * 13 12 11 15 15 C 1.37881 * 119.99762 * 285.55499 * 13 12 11 16 16 N 1.31511 * 120.00043 * 6.49858 * 15 13 12 17 17 Si 1.86801 * 119.99763 * 186.49956 * 15 13 12 18 18 H 1.48505 * 109.46608 * 89.99993 * 17 15 13 19 19 H 1.48493 * 109.46937 * 209.99915 * 17 15 13 20 20 H 1.48499 * 109.47252 * 330.00270 * 17 15 13 21 21 C 1.54036 * 113.92418 * 68.87542 * 12 11 10 22 22 O 1.44175 * 85.51867 * 91.65842 * 21 12 11 23 23 C 1.44178 * 93.34004 * 24.19140 * 22 21 12 24 24 C 1.51447 * 107.31768 * 24.02891 * 6 5 4 25 25 H 1.08993 * 109.47161 * 297.24300 * 1 2 3 26 26 H 1.08996 * 109.47338 * 57.24457 * 1 2 3 27 27 H 1.09005 * 109.47327 * 177.24648 * 1 2 3 28 28 H 1.08999 * 110.83065 * 37.44151 * 4 2 1 29 29 H 1.08994 * 111.00048 * 273.93742 * 4 2 1 30 30 H 1.08998 * 110.44049 * 203.63153 * 5 4 2 31 31 H 1.09001 * 110.44536 * 81.11197 * 5 4 2 32 32 H 1.07996 * 120.00059 * 180.02562 * 7 6 5 33 33 H 1.08996 * 109.47161 * 60.00492 * 11 10 8 34 34 H 1.08999 * 109.47127 * 300.00235 * 11 10 8 35 35 H 0.96995 * 120.00076 * 179.97438 * 16 15 13 36 36 H 1.09003 * 113.86160 * 205.80678 * 21 12 11 37 37 H 1.08999 * 113.86646 * 337.51090 * 21 12 11 38 38 H 1.09000 * 113.86626 * 221.65820 * 23 22 21 39 39 H 1.09003 * 113.86500 * 89.95785 * 23 22 21 40 40 H 1.09002 * 109.98106 * 118.74738 * 24 6 5 41 41 H 1.08998 * 109.98797 * 240.05587 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9118 1.0209 0.0000 4 6 2.0745 -0.7851 1.2203 5 6 3.4814 -1.2153 0.7359 6 6 3.2911 -1.5454 -0.7339 7 6 4.0544 -2.3531 -1.4661 8 6 5.2106 -3.0243 -0.8559 9 8 5.4694 -2.8421 0.3176 10 8 5.9835 -3.8428 -1.5973 11 6 7.1081 -4.4722 -0.9285 12 6 7.8624 -5.3573 -1.9228 13 6 7.0270 -6.4955 -2.4496 14 1 6.6347 -6.4571 -3.4552 15 6 6.7588 -7.5833 -1.6459 16 7 7.1215 -7.5723 -0.3819 17 14 5.8801 -9.0726 -2.3527 18 1 6.8812 -10.0294 -2.8890 19 1 5.0873 -9.7325 -1.2845 20 1 4.9736 -8.6397 -3.4463 21 6 8.6055 -4.5715 -3.0197 22 8 9.7332 -4.6057 -2.1220 23 6 9.2610 -5.7843 -1.4388 24 6 2.0755 -0.7802 -1.2141 25 1 -0.3633 0.4704 0.9136 26 1 -0.3634 0.5560 -0.8642 27 1 -0.3634 -1.0265 -0.0494 28 1 1.4534 -1.6561 1.4294 29 1 2.1463 -0.1426 2.0978 30 1 3.8198 -2.0952 1.2830 31 1 4.1914 -0.3966 0.8533 32 1 3.8242 -2.5154 -2.5087 33 1 6.7442 -5.0824 -0.1019 34 1 7.7792 -3.7037 -0.5449 35 1 6.9324 -8.3373 0.1836 36 1 8.7573 -5.1354 -3.9401 37 1 8.2086 -3.5710 -3.1912 38 1 9.3840 -5.7456 -0.3565 39 1 9.6130 -6.7185 -1.8765 40 1 2.3602 -0.0883 -2.0068 41 1 1.3185 -1.4744 -1.5790 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526129086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:03 Heat of formation + Delta-G solvation = -117.263481 kcal Electronic energy + Delta-G solvation = -22049.171703 eV Core-core repulsion = 18701.438295 eV Total energy + Delta-G solvation = -3347.733408 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.56483 -40.84815 -39.38764 -37.24516 -34.95091 -33.77584 -31.74567 -30.78370 -28.62736 -27.31769 -27.13923 -26.12456 -24.89152 -22.60689 -20.97987 -20.58282 -19.50628 -18.82449 -18.35079 -17.42283 -17.19699 -16.83848 -16.54517 -16.08723 -16.01346 -15.68601 -15.61182 -14.58548 -14.24192 -14.11135 -13.94068 -13.78467 -13.57478 -13.22138 -12.98595 -12.95415 -12.87218 -12.71829 -12.50024 -12.28415 -12.14772 -11.79788 -11.65002 -11.62483 -11.45629 -11.09438 -10.98384 -10.73416 -10.62082 -10.37611 -10.20022 -8.17251 -6.28443 0.16504 1.42789 1.44587 1.53793 1.88288 2.01987 2.41843 3.05282 3.13790 3.40071 3.66237 3.88744 4.01805 4.04425 4.15572 4.23371 4.38258 4.41908 4.43418 4.58475 4.59721 4.66638 4.68803 4.79768 4.83503 4.88974 4.93195 5.00711 5.07843 5.13812 5.17509 5.25901 5.33521 5.34365 5.41902 5.50252 5.50685 5.55645 5.73816 5.76323 6.17646 6.72364 6.89781 7.39670 8.89692 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019806 B = 0.004176 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.339697 B = 6703.720953 C = 7447.185210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 H 0.089 0.911 4 C -0.118 4.118 5 C -0.116 4.116 6 C -0.011 4.011 7 C -0.215 4.215 8 C 0.479 3.521 9 O -0.551 6.551 10 O -0.346 6.346 11 C 0.118 3.882 12 C 0.006 3.994 13 C -0.523 4.523 14 H 0.064 0.936 15 C 0.024 3.976 16 N -0.914 5.914 17 Si 0.955 3.045 18 H -0.271 1.271 19 H -0.289 1.289 20 H -0.268 1.268 21 C 0.045 3.955 22 O -0.416 6.416 23 C 0.075 3.925 24 C -0.094 4.094 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.160 0.840 33 H 0.052 0.948 34 H 0.037 0.963 35 H 0.264 0.736 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.321 13.663 -1.476 18.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 H 0.108 0.892 4 C -0.155 4.155 5 C -0.153 4.153 6 C -0.012 4.012 7 C -0.233 4.233 8 C 0.328 3.672 9 O -0.445 6.445 10 O -0.262 6.262 11 C 0.044 3.956 12 C 0.005 3.995 13 C -0.560 4.560 14 H 0.082 0.918 15 C -0.176 4.176 16 N -0.552 5.552 17 Si 0.780 3.220 18 H -0.197 1.197 19 H -0.215 1.215 20 H -0.192 1.192 21 C -0.031 4.031 22 O -0.336 6.336 23 C -0.002 4.002 24 C -0.130 4.130 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.178 0.822 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.124 0.876 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.989 13.736 -0.959 18.257 hybrid contribution 0.003 -1.389 0.258 1.412 sum -11.986 12.347 -0.701 17.223 Atomic orbital electron populations 1.21790 0.93277 1.02182 1.02683 1.22004 0.96703 0.99357 0.92961 0.89227 1.22662 0.93842 1.00291 0.98699 1.21841 0.99017 1.01915 0.92511 1.23390 0.92945 0.89028 0.95824 1.21291 0.95634 1.03944 1.02478 1.22273 0.83556 0.76731 0.84674 1.90734 1.71914 1.63346 1.18551 1.86544 1.39928 1.55973 1.43705 1.22618 0.84257 0.92983 0.95781 1.21045 0.93232 0.93217 0.91991 1.21162 1.33189 1.01912 0.99767 0.91789 1.25674 0.96033 1.01125 0.94808 1.70019 1.47993 1.31344 1.05842 0.85598 0.78729 0.79563 0.78063 1.19684 1.21522 1.19202 1.24096 0.84387 1.00363 0.94291 1.89427 1.47453 1.45961 1.50789 1.23648 0.92560 0.87516 0.96495 1.21560 0.93282 0.98700 0.99466 0.91821 0.91367 0.92743 0.91390 0.89800 0.91645 0.89594 0.82225 0.93007 0.94484 0.92726 0.89575 0.89773 0.91496 0.90886 0.87643 0.88270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.15 71.98 0.66 -0.86 16 2 C -0.09 -1.26 3.48 -9.68 -0.03 -1.29 16 3 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 4 C -0.12 -2.13 6.38 31.92 0.20 -1.92 16 5 C -0.12 -3.01 5.41 30.86 0.17 -2.85 16 6 C -0.01 -0.28 6.15 -17.00 -0.10 -0.38 16 7 C -0.21 -6.59 10.06 23.40 0.24 -6.35 16 8 C 0.48 20.02 7.91 70.11 0.55 20.58 16 9 O -0.55 -25.32 13.55 19.71 0.27 -25.05 16 10 O -0.35 -16.15 10.03 -57.13 -0.57 -16.72 16 11 C 0.12 5.94 4.68 71.98 0.34 6.28 16 12 C 0.01 0.28 0.57 -52.23 -0.03 0.25 16 13 C -0.52 -27.60 8.20 25.60 0.21 -27.39 16 14 H 0.06 3.32 7.82 -2.91 -0.02 3.30 16 15 C 0.02 1.26 5.30 84.66 0.45 1.71 16 16 N -0.91 -50.86 11.77 21.45 0.25 -50.61 16 17 Si 0.95 42.32 29.54 68.60 2.03 44.34 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 C 0.04 1.95 8.32 72.27 0.60 2.55 16 22 O -0.42 -19.33 12.37 -148.98 -1.84 -21.17 16 23 C 0.07 3.61 7.44 72.27 0.54 4.15 16 24 C -0.09 -1.48 6.21 30.52 0.19 -1.29 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 26 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 27 H 0.05 0.63 8.08 -2.38 -0.02 0.61 16 28 H 0.07 1.27 8.05 -2.39 -0.02 1.25 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 2.19 6.27 -2.39 -0.01 2.17 16 31 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 33 H 0.05 2.94 7.29 -2.39 -0.02 2.92 16 34 H 0.04 1.84 8.08 -2.39 -0.02 1.82 16 35 H 0.26 14.11 8.31 -92.71 -0.77 13.33 16 36 H 0.09 3.47 8.09 -2.39 -0.02 3.45 16 37 H 0.08 3.36 8.10 -2.39 -0.02 3.34 16 38 H 0.07 3.30 8.10 -2.39 -0.02 3.28 16 39 H 0.07 3.53 8.09 -2.39 -0.02 3.52 16 40 H 0.11 1.31 8.14 -2.39 -0.02 1.30 16 41 H 0.10 1.40 7.79 -2.39 -0.02 1.38 16 Total: -1.00 -63.63 338.81 5.11 -58.52 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 1.00 Total: 17.51 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: 3.98 Total: -6.82 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.25 Total: -50.61 kcal Atomic # 8 Polarization: -60.79 SS G_CDS: -2.15 Total: -62.94 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Total: -63.63 5.11 -58.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526129086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.745 kcal (2) G-P(sol) polarization free energy of solvation -63.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds