Wall clock time and date at job start Tue Mar 31 2020 01:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 110.51389 * 2 1 4 4 C 1.54981 * 110.56799 * 122.75516 * 2 1 3 5 5 C 1.54894 * 102.33624 * 155.64739 * 4 2 1 6 6 C 1.51838 * 104.43200 * 322.37602 * 5 4 2 7 7 C 1.33074 * 126.34248 * 203.76813 * 6 5 4 8 8 C 1.46949 * 120.00370 * 180.02562 * 7 6 5 9 9 O 1.21541 * 120.00107 * 5.29368 * 8 7 6 10 10 O 1.34807 * 120.00465 * 185.29480 * 8 7 6 11 11 C 1.45190 * 117.00206 * 185.12695 * 10 8 7 12 12 C 1.52999 * 109.47234 * 184.69038 * 11 10 8 13 13 C 1.50695 * 112.99958 * 304.10721 * 12 11 10 14 14 H 1.08003 * 120.00038 * 113.11605 * 13 12 11 15 15 C 1.37876 * 120.00309 * 293.39362 * 13 12 11 16 16 N 1.31512 * 120.00537 * 190.18980 * 15 13 12 17 17 Si 1.86803 * 119.99561 * 10.19189 * 15 13 12 18 18 H 1.48504 * 109.47149 * 84.85235 * 17 15 13 19 19 H 1.48498 * 109.46995 * 204.84597 * 17 15 13 20 20 H 1.48490 * 109.47486 * 324.84856 * 17 15 13 21 21 C 1.54039 * 113.92468 * 76.03841 * 12 11 10 22 22 O 1.44175 * 85.51789 * 91.66199 * 21 12 11 23 23 C 1.44183 * 93.34135 * 24.19275 * 22 21 12 24 24 C 1.51452 * 107.31652 * 24.02775 * 6 5 4 25 25 H 1.09001 * 109.47115 * 297.25246 * 1 2 3 26 26 H 1.08999 * 109.47347 * 57.24382 * 1 2 3 27 27 H 1.09002 * 109.47674 * 177.24476 * 1 2 3 28 28 H 1.09001 * 110.83645 * 37.43564 * 4 2 1 29 29 H 1.09001 * 110.83209 * 273.86070 * 4 2 1 30 30 H 1.08998 * 110.44055 * 203.63788 * 5 4 2 31 31 H 1.08999 * 110.54008 * 81.16416 * 5 4 2 32 32 H 1.08008 * 120.00169 * 0.02562 * 7 6 5 33 33 H 1.09000 * 109.47147 * 64.69470 * 11 10 8 34 34 H 1.09001 * 109.47616 * 304.69268 * 11 10 8 35 35 H 0.97003 * 120.00477 * 180.02562 * 16 15 13 36 36 H 1.08998 * 113.86398 * 205.80600 * 21 12 11 37 37 H 1.09001 * 113.86549 * 337.51411 * 21 12 11 38 38 H 1.09001 * 113.86382 * 221.65809 * 23 22 21 39 39 H 1.08999 * 113.98451 * 89.96745 * 23 22 21 40 40 H 1.08998 * 109.98188 * 118.75513 * 24 6 5 41 41 H 1.09005 * 109.98526 * 240.05119 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9119 1.0208 0.0000 4 6 2.0744 -0.7851 1.2203 5 6 3.4814 -1.2154 0.7360 6 6 3.2911 -1.5455 -0.7338 7 6 4.0543 -2.3532 -1.4659 8 6 3.7411 -2.5740 -2.8846 9 8 2.8449 -1.9465 -3.4139 10 8 4.4477 -3.4727 -3.5990 11 6 4.1614 -3.5570 -5.0199 12 6 4.9688 -4.7014 -5.6358 13 6 6.4506 -4.5738 -5.3932 14 1 6.9582 -5.2889 -4.7628 15 6 7.1574 -3.5407 -5.9713 16 7 8.4718 -3.5384 -5.9286 17 14 6.2478 -2.1443 -6.8152 18 1 5.8568 -1.1271 -5.8064 19 1 7.1329 -1.5194 -7.8307 20 1 5.0309 -2.6761 -7.4794 21 6 4.4059 -6.1012 -5.3247 22 8 3.6655 -5.9523 -6.5529 23 6 4.6022 -5.0031 -7.1012 24 6 2.0755 -0.7803 -1.2140 25 1 -0.3633 0.4706 0.9136 26 1 -0.3634 0.5560 -0.8642 27 1 -0.3634 -1.0265 -0.0494 28 1 1.4533 -1.6560 1.4295 29 1 2.1464 -0.1397 2.0957 30 1 3.8197 -2.0953 1.2831 31 1 4.1929 -0.3981 0.8536 32 1 4.9040 -2.8466 -1.0174 33 1 4.4353 -2.6187 -5.5021 34 1 3.0974 -3.7435 -5.1658 35 1 8.9690 -2.8114 -6.3350 36 1 5.1536 -6.8936 -5.3539 37 1 3.7792 -6.1364 -4.4336 38 1 4.1312 -4.1676 -7.6189 39 1 5.4106 -5.4583 -7.6733 40 1 2.3602 -0.0885 -2.0068 41 1 1.3185 -1.4744 -1.5790 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526129087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:06 Heat of formation + Delta-G solvation = -89.055986 kcal Electronic energy + Delta-G solvation = -22282.138308 eV Core-core repulsion = 18935.628069 eV Total energy + Delta-G solvation = -3346.510240 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.13335 -39.42937 -38.40546 -35.77213 -32.95590 -32.82922 -30.57181 -29.98618 -27.39486 -25.80401 -25.73185 -24.38355 -24.05188 -21.19754 -20.30086 -18.90431 -18.26244 -17.38999 -16.75686 -16.19133 -15.84098 -15.67450 -15.19111 -14.87053 -14.48644 -14.33755 -13.88288 -13.52117 -13.25106 -13.01724 -12.84433 -12.59387 -12.38817 -12.18120 -11.84642 -11.72117 -11.47020 -11.11845 -11.03486 -10.86630 -10.80412 -10.75932 -10.70359 -10.34368 -9.94412 -9.84986 -9.24684 -9.11825 -9.01028 -8.70478 -8.63448 -6.22323 -4.20847 1.33235 3.14877 3.20751 3.23437 3.28964 3.34508 4.26837 4.27762 4.46078 4.63881 4.69439 4.95284 5.04198 5.07207 5.17952 5.28731 5.33562 5.37443 5.54928 5.58157 5.65139 5.70186 5.74235 5.77618 5.85686 5.92817 6.00194 6.04386 6.12531 6.16817 6.21494 6.27256 6.33830 6.41359 6.49490 6.72973 6.96594 7.00437 7.14972 7.52668 8.30140 8.38182 8.82069 9.39794 10.90444 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.004492 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.793145 B = 6231.725497 C = 6602.761908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 H 0.076 0.924 4 C -0.119 4.119 5 C -0.099 4.099 6 C -0.035 4.035 7 C -0.186 4.186 8 C 0.487 3.513 9 O -0.526 6.526 10 O -0.321 6.321 11 C 0.091 3.909 12 C -0.021 4.021 13 C -0.503 4.503 14 H 0.084 0.916 15 C 0.083 3.917 16 N -0.888 5.888 17 Si 0.854 3.146 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.253 1.253 21 C 0.052 3.948 22 O -0.402 6.402 23 C 0.036 3.964 24 C -0.094 4.094 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.143 0.857 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.266 0.734 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.453 5.417 12.185 17.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 H 0.094 0.906 4 C -0.156 4.156 5 C -0.136 4.136 6 C -0.036 4.036 7 C -0.205 4.205 8 C 0.334 3.666 9 O -0.418 6.418 10 O -0.236 6.236 11 C 0.017 3.983 12 C -0.022 4.022 13 C -0.541 4.541 14 H 0.102 0.898 15 C -0.120 4.120 16 N -0.524 5.524 17 Si 0.683 3.317 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.178 1.178 21 C -0.024 4.024 22 O -0.322 6.322 23 C -0.041 4.041 24 C -0.130 4.130 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.161 0.839 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.762 5.544 11.837 17.584 hybrid contribution -0.084 1.086 -0.555 1.223 sum -11.846 6.630 11.281 17.651 Atomic orbital electron populations 1.21784 0.94699 1.01991 1.01585 1.22069 0.95856 0.99347 0.94805 0.90567 1.22607 0.95362 1.00075 0.97584 1.21579 0.98299 1.02181 0.91523 1.22938 0.93763 0.91396 0.95473 1.21318 1.03566 1.04700 0.90879 1.21464 0.79396 0.77349 0.88377 1.90774 1.30918 1.47326 1.72824 1.86664 1.59574 1.54227 1.23149 1.23145 0.98601 0.99928 0.76583 1.21429 0.97596 0.91191 0.91956 1.20683 0.88503 1.13434 1.31447 0.89831 1.24872 0.94528 0.97350 0.95291 1.69884 1.05616 1.32355 1.44556 0.87486 0.80440 0.83819 0.79952 1.20336 1.21485 1.17825 1.23881 0.93462 0.97879 0.87203 1.89475 1.44187 1.65639 1.32882 1.24534 0.91306 0.90937 0.97285 1.21461 0.95308 0.98764 0.97485 0.92680 0.92533 0.92513 0.90959 0.90985 0.90076 0.89271 0.83895 0.92603 0.92331 0.92373 0.90157 0.90852 0.90625 0.89431 0.89434 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.15 37.16 0.34 -0.86 16 2 C -0.10 -0.96 3.48 -88.90 -0.31 -1.27 16 3 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 4 C -0.12 -0.96 6.38 -24.69 -0.16 -1.12 16 5 C -0.10 -0.91 6.64 -26.32 -0.17 -1.09 16 6 C -0.03 -0.45 6.15 -100.21 -0.62 -1.07 16 7 C -0.19 -2.87 10.06 -37.85 -0.38 -3.25 16 8 C 0.49 9.65 7.89 34.26 0.27 9.92 16 9 O -0.53 -11.03 13.84 -19.30 -0.27 -11.30 16 10 O -0.32 -7.15 9.89 -40.78 -0.40 -7.55 16 11 C 0.09 2.08 4.33 37.16 0.16 2.24 16 12 C -0.02 -0.48 0.49 -154.58 -0.08 -0.55 16 13 C -0.50 -13.54 8.63 -34.44 -0.30 -13.83 16 14 H 0.08 2.43 8.06 -52.48 -0.42 2.00 16 15 C 0.08 2.30 5.45 -17.82 -0.10 2.20 16 16 N -0.89 -26.15 13.96 55.43 0.77 -25.38 16 17 Si 0.85 20.93 24.02 -169.99 -4.08 16.84 16 18 H -0.28 -6.96 7.06 56.52 0.40 -6.56 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.25 -5.70 4.54 56.52 0.26 -5.44 16 21 C 0.05 1.09 8.35 37.61 0.31 1.41 16 22 O -0.40 -8.73 12.37 -35.23 -0.44 -9.17 16 23 C 0.04 0.79 6.79 37.61 0.26 1.04 16 24 C -0.09 -1.18 4.42 -26.84 -0.12 -1.30 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 28 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.14 1.97 8.06 -52.48 -0.42 1.54 16 33 H 0.06 1.34 3.96 -51.93 -0.21 1.13 16 34 H 0.06 1.28 7.92 -51.93 -0.41 0.86 16 35 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.08 1.61 8.09 -51.93 -0.42 1.19 16 37 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 38 H 0.08 1.58 6.29 -51.93 -0.33 1.26 16 39 H 0.09 1.88 8.09 -51.93 -0.42 1.46 16 40 H 0.09 1.26 7.60 -51.93 -0.39 0.86 16 41 H 0.09 1.20 7.41 -51.93 -0.38 0.82 16 LS Contribution 327.86 15.07 4.94 4.94 Total: -1.00 -30.64 327.86 -6.85 -37.49 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.49 Total: 1.65 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -0.89 Total: -7.53 kcal Atomic # 7 Polarization: -26.15 SS G_CDS: 0.77 Total: -25.38 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -1.11 Total: -28.02 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.08 Total: 16.84 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.64 -6.85 -37.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526129087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.569 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds