Wall clock time and date at job start Tue Mar 31 2020 01:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 110.51389 * 2 1 4 4 C 1.54981 * 110.56799 * 122.75516 * 2 1 3 5 5 C 1.54894 * 102.33624 * 155.64739 * 4 2 1 6 6 C 1.51838 * 104.43200 * 322.37602 * 5 4 2 7 7 C 1.33074 * 126.34248 * 203.76813 * 6 5 4 8 8 C 1.46949 * 120.00370 * 180.02562 * 7 6 5 9 9 O 1.21541 * 120.00107 * 5.29368 * 8 7 6 10 10 O 1.34807 * 120.00465 * 185.29480 * 8 7 6 11 11 C 1.45190 * 117.00206 * 185.12695 * 10 8 7 12 12 C 1.52999 * 109.47234 * 184.69038 * 11 10 8 13 13 C 1.50695 * 112.99958 * 304.10721 * 12 11 10 14 14 H 1.08003 * 120.00038 * 113.11605 * 13 12 11 15 15 C 1.37876 * 120.00309 * 293.39362 * 13 12 11 16 16 N 1.31512 * 120.00537 * 190.18980 * 15 13 12 17 17 Si 1.86803 * 119.99561 * 10.19189 * 15 13 12 18 18 H 1.48504 * 109.47149 * 84.85235 * 17 15 13 19 19 H 1.48498 * 109.46995 * 204.84597 * 17 15 13 20 20 H 1.48490 * 109.47486 * 324.84856 * 17 15 13 21 21 C 1.54039 * 113.92468 * 76.03841 * 12 11 10 22 22 O 1.44175 * 85.51789 * 91.66199 * 21 12 11 23 23 C 1.44183 * 93.34135 * 24.19275 * 22 21 12 24 24 C 1.51452 * 107.31652 * 24.02775 * 6 5 4 25 25 H 1.09001 * 109.47115 * 297.25246 * 1 2 3 26 26 H 1.08999 * 109.47347 * 57.24382 * 1 2 3 27 27 H 1.09002 * 109.47674 * 177.24476 * 1 2 3 28 28 H 1.09001 * 110.83645 * 37.43564 * 4 2 1 29 29 H 1.09001 * 110.83209 * 273.86070 * 4 2 1 30 30 H 1.08998 * 110.44055 * 203.63788 * 5 4 2 31 31 H 1.08999 * 110.54008 * 81.16416 * 5 4 2 32 32 H 1.08008 * 120.00169 * 0.02562 * 7 6 5 33 33 H 1.09000 * 109.47147 * 64.69470 * 11 10 8 34 34 H 1.09001 * 109.47616 * 304.69268 * 11 10 8 35 35 H 0.97003 * 120.00477 * 180.02562 * 16 15 13 36 36 H 1.08998 * 113.86398 * 205.80600 * 21 12 11 37 37 H 1.09001 * 113.86549 * 337.51411 * 21 12 11 38 38 H 1.09001 * 113.86382 * 221.65809 * 23 22 21 39 39 H 1.08999 * 113.98451 * 89.96745 * 23 22 21 40 40 H 1.08998 * 109.98188 * 118.75513 * 24 6 5 41 41 H 1.09005 * 109.98526 * 240.05119 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9119 1.0208 0.0000 4 6 2.0744 -0.7851 1.2203 5 6 3.4814 -1.2154 0.7360 6 6 3.2911 -1.5455 -0.7338 7 6 4.0543 -2.3532 -1.4659 8 6 3.7411 -2.5740 -2.8846 9 8 2.8449 -1.9465 -3.4139 10 8 4.4477 -3.4727 -3.5990 11 6 4.1614 -3.5570 -5.0199 12 6 4.9688 -4.7014 -5.6358 13 6 6.4506 -4.5738 -5.3932 14 1 6.9582 -5.2889 -4.7628 15 6 7.1574 -3.5407 -5.9713 16 7 8.4718 -3.5384 -5.9286 17 14 6.2478 -2.1443 -6.8152 18 1 5.8568 -1.1271 -5.8064 19 1 7.1329 -1.5194 -7.8307 20 1 5.0309 -2.6761 -7.4794 21 6 4.4059 -6.1012 -5.3247 22 8 3.6655 -5.9523 -6.5529 23 6 4.6022 -5.0031 -7.1012 24 6 2.0755 -0.7803 -1.2140 25 1 -0.3633 0.4706 0.9136 26 1 -0.3634 0.5560 -0.8642 27 1 -0.3634 -1.0265 -0.0494 28 1 1.4533 -1.6560 1.4295 29 1 2.1464 -0.1397 2.0957 30 1 3.8197 -2.0953 1.2831 31 1 4.1929 -0.3981 0.8536 32 1 4.9040 -2.8466 -1.0174 33 1 4.4353 -2.6187 -5.5021 34 1 3.0974 -3.7435 -5.1658 35 1 8.9690 -2.8114 -6.3350 36 1 5.1536 -6.8936 -5.3539 37 1 3.7792 -6.1364 -4.4336 38 1 4.1312 -4.1676 -7.6189 39 1 5.4106 -5.4583 -7.6733 40 1 2.3602 -0.0885 -2.0068 41 1 1.3185 -1.4744 -1.5790 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526129087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:05 Heat of formation + Delta-G solvation = -107.658846 kcal Electronic energy + Delta-G solvation = -22282.944989 eV Core-core repulsion = 18935.628069 eV Total energy + Delta-G solvation = -3347.316920 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.77763 -40.99787 -39.44335 -37.37058 -34.97827 -33.87733 -32.41546 -30.86396 -28.51519 -27.52362 -27.32195 -26.20029 -25.19943 -22.51735 -21.06951 -20.72022 -19.55267 -19.09814 -18.44853 -17.90208 -17.31345 -16.91417 -16.62449 -16.45155 -16.28519 -15.47957 -15.39679 -14.70139 -14.60430 -14.55794 -14.18956 -13.96689 -13.61542 -13.53236 -13.13197 -12.96413 -12.77010 -12.72451 -12.55181 -12.37553 -12.18091 -11.82198 -11.74888 -11.59449 -11.44017 -11.27208 -11.06473 -10.94136 -10.77844 -10.47165 -10.26125 -8.37795 -6.38988 0.09024 1.18555 1.25109 1.30787 1.73162 1.91554 2.21350 2.86499 2.99234 3.31735 3.61135 3.65686 3.88115 3.95289 3.96989 4.13539 4.19998 4.26507 4.35001 4.43795 4.44393 4.54061 4.56989 4.65940 4.66624 4.83377 4.88265 4.96088 4.97011 5.00125 5.13227 5.15310 5.21325 5.27017 5.30090 5.36303 5.38938 5.50542 5.51212 5.56736 6.20301 6.62262 6.77461 7.24293 8.78432 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.004492 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.793145 B = 6231.725497 C = 6602.761908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.085 0.915 4 C -0.112 4.112 5 C -0.098 4.098 6 C -0.010 4.010 7 C -0.220 4.220 8 C 0.479 3.521 9 O -0.547 6.547 10 O -0.340 6.340 11 C 0.094 3.906 12 C -0.034 4.034 13 C -0.498 4.498 14 H 0.050 0.950 15 C 0.038 3.962 16 N -0.932 5.932 17 Si 0.901 3.099 18 H -0.290 1.290 19 H -0.285 1.285 20 H -0.222 1.222 21 C 0.059 3.941 22 O -0.402 6.402 23 C 0.041 3.959 24 C -0.101 4.101 25 H 0.074 0.926 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.157 0.843 33 H 0.043 0.957 34 H 0.068 0.932 35 H 0.268 0.732 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.174 6.254 13.730 20.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.103 0.897 4 C -0.149 4.149 5 C -0.134 4.134 6 C -0.010 4.010 7 C -0.239 4.239 8 C 0.328 3.672 9 O -0.441 6.441 10 O -0.255 6.255 11 C 0.020 3.980 12 C -0.035 4.035 13 C -0.535 4.535 14 H 0.068 0.932 15 C -0.162 4.162 16 N -0.571 5.571 17 Si 0.728 3.272 18 H -0.217 1.217 19 H -0.212 1.212 20 H -0.146 1.146 21 C -0.017 4.017 22 O -0.322 6.322 23 C -0.036 4.036 24 C -0.138 4.138 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.174 0.826 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.085 0.915 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.508 6.364 13.381 20.051 hybrid contribution 0.406 0.827 -0.922 1.304 sum -13.102 7.191 12.459 19.458 Atomic orbital electron populations 1.21782 0.93947 1.01897 1.02359 1.22072 0.96482 0.99421 0.93619 0.89676 1.22635 0.94174 1.00457 0.97659 1.21754 0.99692 1.03524 0.88448 1.23443 0.91971 0.88223 0.97400 1.21333 1.05834 1.07800 0.88892 1.22271 0.78790 0.76444 0.89700 1.90750 1.31835 1.48001 1.73498 1.86670 1.60559 1.55456 1.22841 1.22997 0.98875 0.98847 0.77279 1.21556 0.95343 0.92987 0.93612 1.20797 0.90488 1.12246 1.30001 0.93157 1.25481 0.94966 0.99423 0.96284 1.69995 1.07165 1.33428 1.46493 0.86705 0.80645 0.80837 0.79013 1.21697 1.21183 1.14560 1.23925 0.93634 0.96447 0.87696 1.89474 1.44119 1.65522 1.33049 1.24507 0.91486 0.91371 0.96227 1.21551 0.95079 0.98457 0.98699 0.90681 0.93154 0.92934 0.90608 0.88336 0.88326 0.87538 0.82581 0.93919 0.91352 0.92311 0.89596 0.89068 0.89271 0.89211 0.91544 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.15 71.98 0.66 -1.41 16 2 C -0.10 -1.58 3.48 -9.68 -0.03 -1.61 16 3 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.11 -1.39 6.38 31.92 0.20 -1.18 16 5 C -0.10 -1.48 6.64 30.86 0.21 -1.27 16 6 C -0.01 -0.23 6.15 -17.00 -0.10 -0.34 16 7 C -0.22 -6.73 10.06 23.40 0.24 -6.49 16 8 C 0.48 19.19 7.89 70.10 0.55 19.75 16 9 O -0.55 -23.29 13.84 19.70 0.27 -23.02 16 10 O -0.34 -15.27 9.89 -57.19 -0.57 -15.83 16 11 C 0.09 4.25 4.33 71.98 0.31 4.56 16 12 C -0.03 -1.56 0.49 -52.23 -0.03 -1.58 16 13 C -0.50 -27.17 8.63 25.60 0.22 -26.95 16 14 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 15 C 0.04 2.12 5.45 84.65 0.46 2.58 16 16 N -0.93 -56.21 13.96 21.45 0.30 -55.91 16 17 Si 0.90 43.20 24.02 68.60 1.65 44.85 16 18 H -0.29 -14.44 7.06 99.48 0.70 -13.74 16 19 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 20 H -0.22 -9.41 4.54 99.48 0.45 -8.96 16 21 C 0.06 2.40 8.35 72.28 0.60 3.01 16 22 O -0.40 -16.66 12.37 -148.98 -1.84 -18.51 16 23 C 0.04 1.71 6.79 72.27 0.49 2.20 16 24 C -0.10 -2.48 4.42 30.52 0.13 -2.35 16 25 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.80 8.08 -2.39 -0.02 0.78 16 28 H 0.08 0.92 8.05 -2.39 -0.02 0.91 16 29 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.16 4.23 8.06 -2.91 -0.02 4.21 16 33 H 0.04 2.03 3.96 -2.39 -0.01 2.02 16 34 H 0.07 2.92 7.92 -2.39 -0.02 2.90 16 35 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 36 H 0.09 3.37 8.09 -2.39 -0.02 3.35 16 37 H 0.09 3.36 8.10 -2.39 -0.02 3.34 16 38 H 0.09 3.49 6.29 -2.39 -0.02 3.48 16 39 H 0.09 3.72 8.09 -2.39 -0.02 3.70 16 40 H 0.07 1.93 7.60 -2.39 -0.02 1.91 16 41 H 0.07 2.00 7.41 -2.38 -0.02 1.99 16 Total: -1.00 -67.24 327.86 4.48 -62.77 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.75 Total: 16.75 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 3.91 Total: -11.10 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.30 Total: -55.91 kcal Atomic # 8 Polarization: -55.22 SS G_CDS: -2.14 Total: -57.36 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.65 Total: 44.85 kcal Total: -67.24 4.48 -62.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526129087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.891 kcal (2) G-P(sol) polarization free energy of solvation -67.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds