Wall clock time and date at job start Tue Mar 31 2020 01:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99909 * 2 1 4 4 H 1.48505 * 109.47183 * 274.94756 * 3 2 1 5 5 H 1.48496 * 109.47734 * 34.94436 * 3 2 1 6 6 H 1.48503 * 109.47218 * 154.95295 * 3 2 1 7 7 C 1.38812 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00144 * 186.87044 * 7 2 1 9 9 N 1.36935 * 119.99519 * 6.87160 * 7 2 1 10 10 C 1.47585 * 134.48852 * 183.31542 * 9 7 2 11 11 C 1.53945 * 86.11726 * 155.35891 * 10 9 7 12 12 C 1.53000 * 113.74109 * 269.15784 * 11 10 9 13 13 C 1.53002 * 109.47256 * 172.60454 * 12 11 10 14 14 O 1.42896 * 109.47252 * 176.37012 * 13 12 11 15 15 N 1.46496 * 113.74533 * 137.94904 * 11 10 9 16 16 C 1.34784 * 119.99678 * 66.36812 * 15 11 10 17 17 O 1.21278 * 119.99778 * 354.62966 * 16 15 11 18 18 C 1.50698 * 119.99823 * 174.63664 * 16 15 11 19 19 H 1.08998 * 115.55053 * 34.27732 * 18 16 15 20 20 C 1.52999 * 117.49534 * 248.60460 * 18 16 15 21 21 C 1.52995 * 60.03190 * 252.49926 * 20 18 16 22 22 C 1.52994 * 138.59197 * 229.11996 * 21 20 18 23 23 C 1.53000 * 60.00125 * 229.10751 * 22 21 20 24 24 C 1.47810 * 134.45933 * 3.18600 * 9 7 2 25 25 H 0.96998 * 119.99641 * 0.02562 * 1 2 3 26 26 H 1.09000 * 113.77127 * 41.06154 * 10 9 7 27 27 H 1.09003 * 113.87242 * 269.67345 * 10 9 7 28 28 H 1.09003 * 109.46866 * 292.59946 * 12 11 10 29 29 H 1.08997 * 109.47847 * 52.60296 * 12 11 10 30 30 H 1.09001 * 109.47267 * 296.37517 * 13 12 11 31 31 H 1.09008 * 109.46684 * 56.37051 * 13 12 11 32 32 H 0.96704 * 114.00057 * 179.97438 * 14 13 12 33 33 H 0.96996 * 120.00518 * 246.37128 * 15 11 10 34 34 H 1.09002 * 117.50288 * 359.97438 * 20 18 16 35 35 H 1.09006 * 117.50024 * 145.00085 * 20 18 16 36 36 H 1.08999 * 117.49520 * 336.59692 * 22 21 20 37 37 H 1.09001 * 117.50400 * 121.61769 * 22 21 20 38 38 H 1.09005 * 117.50049 * 252.51546 * 23 22 21 39 39 H 1.09001 * 117.50459 * 107.48137 * 23 22 21 40 40 H 1.08996 * 113.77403 * 90.37824 * 24 9 7 41 41 H 1.09005 * 113.83626 * 318.90736 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3931 2.1068 -1.3949 5 1 1.5039 2.6203 0.8019 6 1 3.5962 1.4123 0.5927 7 6 2.0103 -1.2021 0.0005 8 1 3.0845 -1.2054 0.1124 9 7 1.3330 -2.3838 -0.1408 10 6 1.7220 -3.8073 -0.1240 11 6 0.2668 -4.0921 0.2897 12 6 0.0495 -4.1117 1.8040 13 6 -1.4473 -4.2172 2.1032 14 8 -1.6448 -4.3206 3.5146 15 7 -0.3230 -5.2498 -0.3870 16 6 0.1540 -6.4870 -0.1450 17 8 1.1325 -6.6331 0.5564 18 6 -0.5287 -7.6886 -0.7459 19 1 -0.9605 -7.5380 -1.7353 20 6 -1.2599 -8.6359 0.2074 21 6 0.0608 -9.0663 -0.4339 22 6 0.6316 -10.2681 -1.1893 23 6 1.3995 -9.6723 -0.0077 24 6 -0.0820 -2.7451 -0.3692 25 1 -0.4849 0.8401 -0.0004 26 1 2.4537 -4.0538 0.6454 27 1 1.9858 -4.2042 -1.1044 28 1 0.5673 -4.9690 2.2343 29 1 0.4432 -3.1933 2.2396 30 1 -1.9561 -3.3288 1.7292 31 1 -1.8541 -5.1021 1.6135 32 1 -2.5727 -4.3907 3.7779 33 1 -1.0567 -5.1261 -1.0092 34 1 -1.2468 -8.3902 1.2693 35 1 -2.1729 -9.1086 -0.1548 36 1 0.1472 -11.2330 -1.0395 37 1 1.0296 -10.0917 -2.1886 38 1 2.3027 -9.1037 -0.2296 39 1 1.4203 -10.2450 0.9195 40 1 -0.3500 -2.8275 -1.4224 41 1 -0.7880 -2.1451 0.2050 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570766520.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:20 Heat of formation + Delta-G solvation = 31.571829 kcal Electronic energy + Delta-G solvation = -22532.252665 eV Core-core repulsion = 19223.265991 eV Total energy + Delta-G solvation = -3308.986674 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.12526 -38.58414 -36.91361 -36.34883 -33.59087 -32.69312 -31.74479 -30.26735 -27.12831 -25.03762 -24.54635 -22.99097 -22.46310 -21.56279 -20.38067 -19.08183 -18.52032 -17.11391 -16.86644 -16.76732 -15.56952 -15.11372 -14.98158 -14.86788 -14.73440 -14.18828 -14.03987 -13.65448 -13.53192 -12.54634 -12.48765 -11.96014 -11.78413 -11.68490 -11.55200 -11.50395 -11.08845 -10.88607 -10.74841 -10.69814 -10.28265 -10.17216 -10.13025 -10.05366 -9.88264 -9.65114 -9.54004 -9.13041 -8.88138 -8.55441 -6.91040 -5.79827 -3.12394 2.74138 3.24872 3.39458 3.44986 3.46675 3.69060 3.83912 4.23293 4.46212 4.50663 4.71472 4.77581 5.07719 5.21085 5.25545 5.38203 5.48018 5.49763 5.50877 5.55607 5.56628 5.58204 5.76427 5.82653 5.87214 5.90965 5.97407 6.11248 6.36930 6.50806 6.53370 6.67144 6.78183 6.86225 7.14083 7.34446 7.49636 7.89535 7.91922 7.96548 8.62130 9.01259 9.67969 10.54571 11.36524 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024140 B = 0.004408 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.618398 B = 6349.955601 C = 7002.825982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.219 4.219 8 H 0.082 0.918 9 N -0.605 5.605 10 C 0.129 3.871 11 C 0.126 3.874 12 C -0.094 4.094 13 C 0.082 3.918 14 O -0.575 6.575 15 N -0.714 5.714 16 C 0.538 3.462 17 O -0.529 6.529 18 C -0.140 4.140 19 H 0.120 0.880 20 C -0.102 4.102 21 C -0.200 4.200 22 C -0.133 4.133 23 C -0.112 4.112 24 C 0.159 3.841 25 H 0.254 0.746 26 H 0.051 0.949 27 H 0.035 0.965 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.371 0.629 33 H 0.396 0.604 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.028 0.972 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.491 -17.156 -1.430 18.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.347 4.347 8 H 0.100 0.900 9 N -0.331 5.331 10 C 0.003 3.997 11 C 0.040 3.960 12 C -0.132 4.132 13 C 0.005 3.995 14 O -0.380 6.380 15 N -0.365 5.365 16 C 0.323 3.677 17 O -0.404 6.404 18 C -0.162 4.162 19 H 0.138 0.862 20 C -0.139 4.139 21 C -0.201 4.201 22 C -0.169 4.169 23 C -0.149 4.149 24 C 0.032 3.968 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.217 0.783 33 H 0.230 0.770 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.046 0.954 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.071 -16.836 -0.868 17.604 hybrid contribution -0.621 1.032 -0.682 1.384 sum -5.692 -15.804 -1.550 16.869 Atomic orbital electron populations 1.69796 1.05041 1.25365 1.56502 1.24750 0.95660 0.97519 1.02371 0.86087 0.78792 0.83393 0.77454 1.21689 1.21671 1.20492 1.19017 0.90877 0.81848 1.42955 0.90030 1.45668 1.04136 0.99755 1.83554 1.22784 0.93795 0.85360 0.97801 1.22919 0.96133 0.84837 0.92126 1.21310 0.94373 1.04093 0.93450 1.22132 0.97765 0.99071 0.80532 1.86499 1.30485 1.97153 1.23817 1.46162 1.37980 1.06137 1.46229 1.19598 0.83932 0.83400 0.80748 1.90682 1.25475 1.85897 1.38391 1.22051 1.03924 0.89061 1.01114 0.86171 1.22633 0.93669 0.99187 0.98403 1.21126 0.97021 0.94582 1.07378 1.22749 1.02280 0.94819 0.97101 1.22576 0.93520 1.00739 0.98079 1.22688 0.90014 0.87551 0.96500 0.93647 0.93112 0.94699 0.91054 0.89143 0.93220 0.94571 0.78311 0.76999 0.88137 0.87876 0.88571 0.88654 0.88118 0.88694 0.95439 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.60 11.31 55.49 0.63 -25.97 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 22.15 29.56 -169.99 -5.02 17.12 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.22 -6.18 10.69 -15.06 -0.16 -6.34 16 8 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 9 N -0.60 -15.55 3.54 -177.48 -0.63 -16.18 16 10 C 0.13 2.88 7.52 -2.96 -0.02 2.86 16 11 C 0.13 2.43 0.67 -134.03 -0.09 2.34 16 12 C -0.09 -1.85 4.82 -26.73 -0.13 -1.98 16 13 C 0.08 1.36 6.85 37.16 0.25 1.62 16 14 O -0.58 -9.31 13.66 -35.23 -0.48 -9.79 16 15 N -0.71 -10.91 4.49 -49.07 -0.22 -11.13 16 16 C 0.54 8.38 7.27 -10.98 -0.08 8.30 16 17 O -0.53 -10.18 14.66 5.56 0.08 -10.10 16 18 C -0.14 -1.65 6.19 -91.74 -0.57 -2.22 16 19 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 20 C -0.10 -1.04 10.23 -26.73 -0.27 -1.31 16 21 C -0.20 -2.30 5.06 -154.48 -0.78 -3.09 16 22 C -0.13 -1.23 10.53 -26.73 -0.28 -1.51 16 23 C -0.11 -1.28 10.17 -26.73 -0.27 -1.55 16 24 C 0.16 3.57 6.89 -2.83 -0.02 3.55 16 25 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.05 1.17 8.10 -51.93 -0.42 0.75 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.07 1.48 7.13 -51.93 -0.37 1.11 16 29 H 0.09 2.08 8.02 -51.93 -0.42 1.66 16 30 H 0.05 0.83 7.59 -51.93 -0.39 0.44 16 31 H 0.04 0.53 7.56 -51.92 -0.39 0.14 16 32 H 0.37 3.96 9.12 45.56 0.42 4.38 16 33 H 0.40 4.92 8.71 -40.82 -0.36 4.56 16 34 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 2.19 6.32 -51.93 -0.33 1.86 16 LS Contribution 342.90 15.07 5.17 5.17 Total: -1.00 -33.45 342.90 -8.61 -42.06 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.61 Total: 8.44 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -2.52 Total: 0.38 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.22 Total: -53.28 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.40 Total: -19.89 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.45 -8.61 -42.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570766520.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.630 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds