Wall clock time and date at job start Tue Mar 31 2020 01:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99909 * 2 1 4 4 H 1.48505 * 109.47183 * 274.94756 * 3 2 1 5 5 H 1.48496 * 109.47734 * 34.94436 * 3 2 1 6 6 H 1.48503 * 109.47218 * 154.95295 * 3 2 1 7 7 C 1.38812 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00144 * 186.87044 * 7 2 1 9 9 N 1.36935 * 119.99519 * 6.87160 * 7 2 1 10 10 C 1.47585 * 134.48852 * 183.31542 * 9 7 2 11 11 C 1.53945 * 86.11726 * 155.35891 * 10 9 7 12 12 C 1.53000 * 113.74109 * 269.15784 * 11 10 9 13 13 C 1.53002 * 109.47256 * 172.60454 * 12 11 10 14 14 O 1.42896 * 109.47252 * 176.37012 * 13 12 11 15 15 N 1.46496 * 113.74533 * 137.94904 * 11 10 9 16 16 C 1.34784 * 119.99678 * 66.36812 * 15 11 10 17 17 O 1.21278 * 119.99778 * 354.62966 * 16 15 11 18 18 C 1.50698 * 119.99823 * 174.63664 * 16 15 11 19 19 H 1.08998 * 115.55053 * 34.27732 * 18 16 15 20 20 C 1.52999 * 117.49534 * 248.60460 * 18 16 15 21 21 C 1.52995 * 60.03190 * 252.49926 * 20 18 16 22 22 C 1.52994 * 138.59197 * 229.11996 * 21 20 18 23 23 C 1.53000 * 60.00125 * 229.10751 * 22 21 20 24 24 C 1.47810 * 134.45933 * 3.18600 * 9 7 2 25 25 H 0.96998 * 119.99641 * 0.02562 * 1 2 3 26 26 H 1.09000 * 113.77127 * 41.06154 * 10 9 7 27 27 H 1.09003 * 113.87242 * 269.67345 * 10 9 7 28 28 H 1.09003 * 109.46866 * 292.59946 * 12 11 10 29 29 H 1.08997 * 109.47847 * 52.60296 * 12 11 10 30 30 H 1.09001 * 109.47267 * 296.37517 * 13 12 11 31 31 H 1.09008 * 109.46684 * 56.37051 * 13 12 11 32 32 H 0.96704 * 114.00057 * 179.97438 * 14 13 12 33 33 H 0.96996 * 120.00518 * 246.37128 * 15 11 10 34 34 H 1.09002 * 117.50288 * 359.97438 * 20 18 16 35 35 H 1.09006 * 117.50024 * 145.00085 * 20 18 16 36 36 H 1.08999 * 117.49520 * 336.59692 * 22 21 20 37 37 H 1.09001 * 117.50400 * 121.61769 * 22 21 20 38 38 H 1.09005 * 117.50049 * 252.51546 * 23 22 21 39 39 H 1.09001 * 117.50459 * 107.48137 * 23 22 21 40 40 H 1.08996 * 113.77403 * 90.37824 * 24 9 7 41 41 H 1.09005 * 113.83626 * 318.90736 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3931 2.1068 -1.3949 5 1 1.5039 2.6203 0.8019 6 1 3.5962 1.4123 0.5927 7 6 2.0103 -1.2021 0.0005 8 1 3.0845 -1.2054 0.1124 9 7 1.3330 -2.3838 -0.1408 10 6 1.7220 -3.8073 -0.1240 11 6 0.2668 -4.0921 0.2897 12 6 0.0495 -4.1117 1.8040 13 6 -1.4473 -4.2172 2.1032 14 8 -1.6448 -4.3206 3.5146 15 7 -0.3230 -5.2498 -0.3870 16 6 0.1540 -6.4870 -0.1450 17 8 1.1325 -6.6331 0.5564 18 6 -0.5287 -7.6886 -0.7459 19 1 -0.9605 -7.5380 -1.7353 20 6 -1.2599 -8.6359 0.2074 21 6 0.0608 -9.0663 -0.4339 22 6 0.6316 -10.2681 -1.1893 23 6 1.3995 -9.6723 -0.0077 24 6 -0.0820 -2.7451 -0.3692 25 1 -0.4849 0.8401 -0.0004 26 1 2.4537 -4.0538 0.6454 27 1 1.9858 -4.2042 -1.1044 28 1 0.5673 -4.9690 2.2343 29 1 0.4432 -3.1933 2.2396 30 1 -1.9561 -3.3288 1.7292 31 1 -1.8541 -5.1021 1.6135 32 1 -2.5727 -4.3907 3.7779 33 1 -1.0567 -5.1261 -1.0092 34 1 -1.2468 -8.3902 1.2693 35 1 -2.1729 -9.1086 -0.1548 36 1 0.1472 -11.2330 -1.0395 37 1 1.0296 -10.0917 -2.1886 38 1 2.3027 -9.1037 -0.2296 39 1 1.4203 -10.2450 0.9195 40 1 -0.3500 -2.8275 -1.4224 41 1 -0.7880 -2.1451 0.2050 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570766520.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:19 Heat of formation + Delta-G solvation = 7.081078 kcal Electronic energy + Delta-G solvation = -22533.314663 eV Core-core repulsion = 19223.265991 eV Total energy + Delta-G solvation = -3310.048673 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.53890 -39.90277 -38.07811 -37.71461 -35.24067 -33.93546 -33.28979 -31.82973 -29.05530 -26.87030 -25.91066 -24.43616 -23.25274 -23.22773 -21.57491 -20.22435 -19.93847 -18.80148 -18.40328 -18.03665 -17.16081 -16.70148 -16.26134 -16.02059 -15.84445 -15.71532 -15.42141 -15.28429 -14.88919 -14.39930 -13.76628 -13.53316 -13.32937 -13.21441 -12.94954 -12.80497 -12.58017 -12.55751 -12.32614 -12.27163 -12.04360 -11.75247 -11.41182 -11.11321 -11.02666 -10.96280 -10.89937 -10.84989 -10.53249 -10.02828 -8.96676 -7.93773 -5.28212 1.45370 1.46401 1.55616 1.58311 2.05359 2.46942 2.80498 2.91536 3.13711 3.23589 3.36467 3.40852 3.60936 3.85407 3.92277 4.11599 4.16680 4.27298 4.32881 4.47216 4.54959 4.67288 4.69396 4.70483 4.78957 4.81567 4.83041 4.86500 5.02579 5.05916 5.08856 5.11509 5.16137 5.22924 5.31120 5.46441 5.72541 5.89523 6.69236 6.88435 6.91099 7.38713 7.55018 8.48432 9.21567 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024140 B = 0.004408 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.618398 B = 6349.955601 C = 7002.825982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.055 4.055 3 Si 0.977 3.023 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.241 4.241 8 H 0.077 0.923 9 N -0.631 5.631 10 C 0.127 3.873 11 C 0.158 3.842 12 C -0.087 4.087 13 C 0.094 3.906 14 O -0.593 6.593 15 N -0.703 5.703 16 C 0.535 3.465 17 O -0.570 6.570 18 C -0.145 4.145 19 H 0.151 0.849 20 C -0.083 4.083 21 C -0.225 4.225 22 C -0.104 4.104 23 C -0.136 4.136 24 C 0.164 3.836 25 H 0.252 0.748 26 H 0.034 0.966 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.397 0.603 33 H 0.415 0.585 34 H 0.087 0.913 35 H 0.138 0.862 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.036 0.964 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.179 -18.756 -2.399 20.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.249 4.249 3 Si 0.805 3.195 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.198 1.198 7 C -0.370 4.370 8 H 0.095 0.905 9 N -0.358 5.358 10 C 0.000 4.000 11 C 0.070 3.930 12 C -0.126 4.126 13 C 0.016 3.984 14 O -0.401 6.401 15 N -0.356 5.356 16 C 0.323 3.677 17 O -0.449 6.449 18 C -0.166 4.166 19 H 0.168 0.832 20 C -0.120 4.120 21 C -0.225 4.225 22 C -0.140 4.140 23 C -0.173 4.173 24 C 0.039 3.961 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.247 0.753 33 H 0.252 0.748 34 H 0.106 0.894 35 H 0.156 0.844 36 H 0.138 0.862 37 H 0.120 0.880 38 H 0.095 0.905 39 H 0.117 0.883 40 H 0.054 0.946 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.801 -18.471 -1.855 19.771 hybrid contribution -0.048 1.471 -0.334 1.510 sum -6.850 -17.000 -2.189 18.458 Atomic orbital electron populations 1.69946 1.06113 1.25836 1.57164 1.25523 0.96614 1.00426 1.02321 0.85086 0.77785 0.79216 0.77383 1.21207 1.21643 1.19760 1.19306 0.91154 0.83329 1.43165 0.90538 1.45941 1.05699 1.00289 1.83865 1.22844 0.95560 0.84065 0.97506 1.22159 0.93774 0.85171 0.91883 1.21155 0.96842 1.01270 0.93339 1.21939 0.95014 1.00184 0.81240 1.86437 1.33178 1.97178 1.23354 1.45913 1.38303 1.05057 1.46292 1.20331 0.83339 0.84129 0.79894 1.90679 1.27452 1.86467 1.40287 1.22044 1.04671 0.87164 1.02673 0.83185 1.22742 0.94322 0.97489 0.97429 1.21421 0.97471 0.95029 1.08597 1.22838 1.00047 0.94800 0.96320 1.22569 0.93074 1.01863 0.99824 1.22585 0.88100 0.88748 0.96701 0.93915 0.94764 0.94224 0.92348 0.93218 0.93468 0.91798 0.75330 0.74795 0.89416 0.84419 0.86175 0.87957 0.90528 0.88252 0.94624 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.31 11.31 21.65 0.24 -55.07 16 2 C -0.05 -3.12 5.49 84.86 0.47 -2.66 16 3 Si 0.98 46.02 29.56 68.60 2.03 48.05 16 4 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.24 -13.96 10.69 84.03 0.90 -13.07 16 8 H 0.08 4.35 7.84 -2.91 -0.02 4.33 16 9 N -0.63 -33.41 3.54 -715.43 -2.53 -35.94 16 10 C 0.13 5.81 7.52 86.48 0.65 6.46 16 11 C 0.16 6.13 0.67 5.36 0.00 6.14 16 12 C -0.09 -3.52 4.82 30.59 0.15 -3.37 16 13 C 0.09 3.02 6.85 71.98 0.49 3.51 16 14 O -0.59 -18.52 13.66 -148.98 -2.03 -20.55 16 15 N -0.70 -20.55 4.49 -427.54 -1.92 -22.47 16 16 C 0.54 16.02 7.27 87.66 0.64 16.66 16 17 O -0.57 -22.14 14.66 -3.02 -0.04 -22.19 16 18 C -0.14 -2.99 6.19 -11.52 -0.07 -3.06 16 19 H 0.15 2.21 8.14 -2.39 -0.02 2.19 16 20 C -0.08 -1.41 10.23 30.59 0.31 -1.09 16 21 C -0.22 -4.60 5.06 -52.16 -0.26 -4.87 16 22 C -0.10 -1.61 10.53 30.59 0.32 -1.29 16 23 C -0.14 -3.00 10.17 30.59 0.31 -2.69 16 24 C 0.16 7.50 6.89 86.44 0.60 8.10 16 25 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 26 H 0.03 1.66 8.10 -2.39 -0.02 1.64 16 27 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.06 2.50 7.13 -2.39 -0.02 2.48 16 29 H 0.05 2.39 8.02 -2.39 -0.02 2.37 16 30 H 0.05 1.55 7.59 -2.39 -0.02 1.53 16 31 H 0.06 1.71 7.56 -2.38 -0.02 1.69 16 32 H 0.40 7.64 9.12 -74.05 -0.68 6.96 16 33 H 0.41 9.25 8.71 -92.71 -0.81 8.45 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.14 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.07 3.37 6.32 -2.38 -0.02 3.35 16 Total: -1.00 -74.56 342.90 -0.19 -74.76 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: -0.44 Total: 24.65 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 4.50 Total: 8.76 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -4.21 Total: -113.48 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -2.08 Total: -42.74 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -74.56 -0.19 -74.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570766520.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.840 kcal (2) G-P(sol) polarization free energy of solvation -74.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds