Wall clock time and date at job start Tue Mar 31 2020 01:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00038 * 2 1 4 4 H 1.48504 * 109.47029 * 239.99966 * 3 2 1 5 5 H 1.48499 * 109.47081 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46994 * 119.99881 * 3 2 1 7 7 C 1.38805 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99912 * 179.72184 * 7 2 1 9 9 N 1.36932 * 120.00483 * 0.02562 * 7 2 1 10 10 C 1.47073 * 136.05410 * 359.62731 * 9 7 2 11 11 C 1.53752 * 87.88673 * 152.96057 * 10 9 7 12 12 C 1.53002 * 114.08407 * 139.77919 * 11 10 9 13 13 C 1.53006 * 109.47223 * 87.35500 * 12 11 10 14 14 O 1.42897 * 109.47181 * 175.29708 * 13 12 11 15 15 N 1.46497 * 114.39864 * 272.67350 * 11 10 9 16 16 C 1.34776 * 120.00201 * 150.61806 * 15 11 10 17 17 O 1.21279 * 119.99943 * 4.55943 * 16 15 11 18 18 C 1.50696 * 120.00147 * 184.55533 * 16 15 11 19 19 H 1.09005 * 115.55406 * 325.67232 * 18 16 15 20 20 C 1.53005 * 117.49755 * 111.38286 * 18 16 15 21 21 C 1.52990 * 59.99849 * 107.48936 * 20 18 16 22 22 C 1.53003 * 138.58848 * 130.89031 * 21 20 18 23 23 C 1.52992 * 138.59076 * 229.10744 * 21 20 18 24 24 C 1.47062 * 136.06328 * 179.97438 * 9 7 2 25 25 H 0.97004 * 120.00115 * 359.97438 * 1 2 3 26 26 H 1.08999 * 113.46748 * 267.69755 * 10 9 7 27 27 H 1.09001 * 113.46813 * 38.13398 * 10 9 7 28 28 H 1.08998 * 109.47206 * 207.35228 * 12 11 10 29 29 H 1.09000 * 109.47226 * 327.35308 * 12 11 10 30 30 H 1.09001 * 109.46737 * 295.29689 * 13 12 11 31 31 H 1.08998 * 109.46910 * 55.29125 * 13 12 11 32 32 H 0.96699 * 114.00189 * 179.97438 * 14 13 12 33 33 H 0.97001 * 120.00019 * 330.62280 * 15 11 10 34 34 H 1.08999 * 117.49611 * 214.97983 * 20 18 16 35 35 H 1.08997 * 117.50125 * 359.97438 * 20 18 16 36 36 H 1.08995 * 117.50079 * 238.38501 * 22 21 20 37 37 H 1.09000 * 117.49400 * 23.40696 * 22 21 20 38 38 H 1.09007 * 117.49658 * 336.59499 * 23 21 20 39 39 H 1.08994 * 117.50472 * 121.59578 * 23 21 20 40 40 H 1.09002 * 113.46771 * 321.86208 * 24 9 7 41 41 H 1.09002 * 113.47055 * 92.24467 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 -0.0040 9 7 1.3256 -2.3880 0.0005 10 6 -0.0878 -2.7948 0.0067 11 6 0.3416 -4.0921 -0.6980 12 6 -0.3811 -5.3439 -0.1961 13 6 -1.6851 -5.5268 -0.9753 14 8 -2.3058 -6.7531 -0.5840 15 7 0.3959 -3.9978 -2.1589 16 6 1.2634 -4.7620 -2.8517 17 8 1.9401 -5.5865 -2.2746 18 6 1.3923 -4.5921 -4.3435 19 1 0.4725 -4.3343 -4.8686 20 6 2.6998 -4.0031 -4.8770 21 6 2.3942 -5.4893 -5.0727 22 6 2.3996 -6.5231 -6.2007 23 6 3.0851 -6.8392 -4.8698 24 6 1.6798 -3.8153 0.0005 25 1 -0.4850 0.8401 0.0004 26 1 -0.4885 -2.9565 1.0074 27 1 -0.7257 -2.1573 -0.6054 28 1 0.2562 -6.2155 -0.3447 29 1 -0.6043 -5.2337 0.8651 30 1 -2.3563 -4.6952 -0.7606 31 1 -1.4695 -5.5533 -2.0434 32 1 -3.1397 -6.9345 -1.0387 33 1 -0.1923 -3.3853 -2.6276 34 1 2.6403 -3.3574 -5.7532 35 1 3.4665 -3.7381 -4.1490 36 1 1.4625 -7.0354 -6.4183 37 1 3.0385 -6.3254 -7.0614 38 1 4.1750 -6.8496 -4.8550 39 1 2.5992 -7.5595 -4.2117 40 1 2.5477 -4.0472 -0.6169 41 1 1.7464 -4.2461 0.9996 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570766521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:22 Heat of formation + Delta-G solvation = 35.871476 kcal Electronic energy + Delta-G solvation = -22678.278903 eV Core-core repulsion = 19369.478676 eV Total energy + Delta-G solvation = -3308.800227 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.12362 -38.55000 -36.79549 -36.53826 -33.45960 -32.61450 -31.75136 -30.55211 -27.15120 -24.80463 -24.44268 -23.30062 -22.38443 -21.21285 -20.45939 -18.94914 -18.68870 -17.30119 -16.76277 -16.67047 -15.32814 -15.11066 -15.00030 -14.73829 -14.59365 -14.47258 -13.93389 -13.63536 -13.32329 -12.91030 -12.59696 -12.25971 -11.73996 -11.61833 -11.47758 -11.34605 -11.19347 -10.95155 -10.86826 -10.70236 -10.15013 -10.09678 -10.03514 -9.94897 -9.84889 -9.68433 -9.47345 -9.07516 -8.86936 -8.44394 -6.90776 -5.80934 -3.11973 2.88365 3.33918 3.37698 3.41943 3.42702 3.80856 3.97507 4.34907 4.36777 4.47692 4.85758 4.87503 5.08698 5.23303 5.28941 5.42220 5.45138 5.49094 5.56439 5.58572 5.64677 5.66760 5.75716 5.80584 5.94251 5.98098 6.08054 6.17997 6.27650 6.32132 6.50410 6.57375 6.66329 6.89428 7.07926 7.34598 7.45993 7.75859 7.92413 8.03976 8.73986 9.00375 9.66724 10.59740 11.36920 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.013401 B = 0.006067 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.932279 B = 4614.159170 C = 6144.126574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.211 4.211 8 H 0.080 0.920 9 N -0.605 5.605 10 C 0.159 3.841 11 C 0.118 3.882 12 C -0.109 4.109 13 C 0.081 3.919 14 O -0.578 6.578 15 N -0.685 5.685 16 C 0.544 3.456 17 O -0.536 6.536 18 C -0.138 4.138 19 H 0.119 0.881 20 C -0.097 4.097 21 C -0.201 4.201 22 C -0.133 4.133 23 C -0.113 4.113 24 C 0.122 3.878 25 H 0.254 0.746 26 H 0.039 0.961 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.373 0.627 33 H 0.400 0.600 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.052 0.948 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.098 -10.756 -10.412 15.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.338 4.338 8 H 0.097 0.903 9 N -0.331 5.331 10 C 0.032 3.968 11 C 0.030 3.970 12 C -0.148 4.148 13 C 0.004 3.996 14 O -0.382 6.382 15 N -0.334 5.334 16 C 0.329 3.671 17 O -0.413 6.413 18 C -0.159 4.159 19 H 0.137 0.863 20 C -0.135 4.135 21 C -0.202 4.202 22 C -0.170 4.170 23 C -0.149 4.149 24 C -0.004 4.004 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.218 0.782 33 H 0.235 0.765 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.070 0.930 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.013 -10.960 -9.587 14.597 hybrid contribution -0.441 1.480 -0.427 1.602 sum -1.454 -9.480 -10.014 13.866 Atomic orbital electron populations 1.69785 1.04956 1.25445 1.56915 1.24738 0.95683 0.97371 1.02587 0.86194 0.78474 0.83102 0.77966 1.21139 1.21554 1.21190 1.18865 0.90082 0.81333 1.43563 0.90270 1.45494 1.02238 0.99428 1.85900 1.22443 0.89549 0.88221 0.96537 1.21989 0.99425 0.95515 0.80093 1.21616 0.94777 0.98461 0.99968 1.22143 0.94390 0.85274 0.97800 1.86485 1.40876 1.41818 1.69056 1.45313 1.39704 1.42196 1.06164 1.19497 0.79497 0.80664 0.87401 1.90650 1.44719 1.35136 1.70772 1.21967 0.95999 1.05001 0.92913 0.86320 1.22636 0.96505 0.92325 1.02003 1.21139 1.04352 0.90358 1.04307 1.22734 1.02359 0.99772 0.92136 1.22548 0.99182 0.95236 0.97963 1.22615 0.95080 0.86032 0.96722 0.93627 0.94325 0.90627 0.90783 0.90496 0.93541 0.93986 0.78150 0.76532 0.87831 0.87914 0.88796 0.88611 0.88757 0.88271 0.92950 0.94176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.48 11.50 55.49 0.64 -25.84 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.21 -5.89 10.74 -15.06 -0.16 -6.05 16 8 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 9 N -0.61 -15.40 3.78 -184.60 -0.70 -16.09 16 10 C 0.16 3.57 6.79 -8.38 -0.06 3.51 16 11 C 0.12 2.23 0.77 -131.58 -0.10 2.13 16 12 C -0.11 -1.84 5.18 -26.73 -0.14 -1.98 16 13 C 0.08 1.18 6.86 37.16 0.25 1.43 16 14 O -0.58 -8.05 13.66 -35.23 -0.48 -8.53 16 15 N -0.68 -11.75 4.11 -47.32 -0.19 -11.94 16 16 C 0.54 9.39 7.19 -10.99 -0.08 9.31 16 17 O -0.54 -10.78 14.50 5.56 0.08 -10.70 16 18 C -0.14 -1.91 6.19 -91.77 -0.57 -2.48 16 19 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 20 C -0.10 -1.28 10.23 -26.73 -0.27 -1.56 16 21 C -0.20 -2.62 5.05 -154.52 -0.78 -3.40 16 22 C -0.13 -1.37 10.53 -26.73 -0.28 -1.65 16 23 C -0.11 -1.39 10.16 -26.73 -0.27 -1.66 16 24 C 0.12 2.70 7.55 -8.53 -0.06 2.64 16 25 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.04 0.89 7.92 -51.93 -0.41 0.47 16 27 H 0.08 1.82 7.11 -51.93 -0.37 1.45 16 28 H 0.07 1.36 7.83 -51.93 -0.41 0.96 16 29 H 0.08 1.29 7.87 -51.93 -0.41 0.88 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.59 7.34 -51.93 -0.38 0.21 16 32 H 0.37 3.28 9.12 45.56 0.42 3.70 16 33 H 0.40 6.26 8.80 -40.82 -0.36 5.90 16 34 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.05 1.22 6.80 -51.93 -0.35 0.87 16 41 H 0.04 0.87 8.10 -51.93 -0.42 0.45 16 LS Contribution 343.35 15.07 5.17 5.17 Total: -1.00 -32.94 343.35 -8.74 -41.69 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.62 Total: 9.42 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -2.62 Total: -0.05 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.25 Total: -53.88 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.40 Total: -19.23 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.94 -8.74 -41.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570766521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.559 kcal (2) G-P(sol) polarization free energy of solvation -32.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds