Wall clock time and date at job start Tue Mar 31 2020 01:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00038 * 2 1 4 4 H 1.48504 * 109.47029 * 239.99966 * 3 2 1 5 5 H 1.48499 * 109.47081 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46994 * 119.99881 * 3 2 1 7 7 C 1.38805 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99912 * 179.72184 * 7 2 1 9 9 N 1.36932 * 120.00483 * 0.02562 * 7 2 1 10 10 C 1.47073 * 136.05410 * 359.62731 * 9 7 2 11 11 C 1.53752 * 87.88673 * 152.96057 * 10 9 7 12 12 C 1.53002 * 114.08407 * 139.77919 * 11 10 9 13 13 C 1.53006 * 109.47223 * 87.35500 * 12 11 10 14 14 O 1.42897 * 109.47181 * 175.29708 * 13 12 11 15 15 N 1.46497 * 114.39864 * 272.67350 * 11 10 9 16 16 C 1.34776 * 120.00201 * 150.61806 * 15 11 10 17 17 O 1.21279 * 119.99943 * 4.55943 * 16 15 11 18 18 C 1.50696 * 120.00147 * 184.55533 * 16 15 11 19 19 H 1.09005 * 115.55406 * 325.67232 * 18 16 15 20 20 C 1.53005 * 117.49755 * 111.38286 * 18 16 15 21 21 C 1.52990 * 59.99849 * 107.48936 * 20 18 16 22 22 C 1.53003 * 138.58848 * 130.89031 * 21 20 18 23 23 C 1.52992 * 138.59076 * 229.10744 * 21 20 18 24 24 C 1.47062 * 136.06328 * 179.97438 * 9 7 2 25 25 H 0.97004 * 120.00115 * 359.97438 * 1 2 3 26 26 H 1.08999 * 113.46748 * 267.69755 * 10 9 7 27 27 H 1.09001 * 113.46813 * 38.13398 * 10 9 7 28 28 H 1.08998 * 109.47206 * 207.35228 * 12 11 10 29 29 H 1.09000 * 109.47226 * 327.35308 * 12 11 10 30 30 H 1.09001 * 109.46737 * 295.29689 * 13 12 11 31 31 H 1.08998 * 109.46910 * 55.29125 * 13 12 11 32 32 H 0.96699 * 114.00189 * 179.97438 * 14 13 12 33 33 H 0.97001 * 120.00019 * 330.62280 * 15 11 10 34 34 H 1.08999 * 117.49611 * 214.97983 * 20 18 16 35 35 H 1.08997 * 117.50125 * 359.97438 * 20 18 16 36 36 H 1.08995 * 117.50079 * 238.38501 * 22 21 20 37 37 H 1.09000 * 117.49400 * 23.40696 * 22 21 20 38 38 H 1.09007 * 117.49658 * 336.59499 * 23 21 20 39 39 H 1.08994 * 117.50472 * 121.59578 * 23 21 20 40 40 H 1.09002 * 113.46771 * 321.86208 * 24 9 7 41 41 H 1.09002 * 113.47055 * 92.24467 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 -0.0040 9 7 1.3256 -2.3880 0.0005 10 6 -0.0878 -2.7948 0.0067 11 6 0.3416 -4.0921 -0.6980 12 6 -0.3811 -5.3439 -0.1961 13 6 -1.6851 -5.5268 -0.9753 14 8 -2.3058 -6.7531 -0.5840 15 7 0.3959 -3.9978 -2.1589 16 6 1.2634 -4.7620 -2.8517 17 8 1.9401 -5.5865 -2.2746 18 6 1.3923 -4.5921 -4.3435 19 1 0.4725 -4.3343 -4.8686 20 6 2.6998 -4.0031 -4.8770 21 6 2.3942 -5.4893 -5.0727 22 6 2.3996 -6.5231 -6.2007 23 6 3.0851 -6.8392 -4.8698 24 6 1.6798 -3.8153 0.0005 25 1 -0.4850 0.8401 0.0004 26 1 -0.4885 -2.9565 1.0074 27 1 -0.7257 -2.1573 -0.6054 28 1 0.2562 -6.2155 -0.3447 29 1 -0.6043 -5.2337 0.8651 30 1 -2.3563 -4.6952 -0.7606 31 1 -1.4695 -5.5533 -2.0434 32 1 -3.1397 -6.9345 -1.0387 33 1 -0.1923 -3.3853 -2.6276 34 1 2.6403 -3.3574 -5.7532 35 1 3.4665 -3.7381 -4.1490 36 1 1.4625 -7.0354 -6.4183 37 1 3.0385 -6.3254 -7.0614 38 1 4.1750 -6.8496 -4.8550 39 1 2.5992 -7.5595 -4.2117 40 1 2.5477 -4.0472 -0.6169 41 1 1.7464 -4.2461 0.9996 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570766521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:21 Heat of formation + Delta-G solvation = 12.302423 kcal Electronic energy + Delta-G solvation = -22679.300934 eV Core-core repulsion = 19369.478676 eV Total energy + Delta-G solvation = -3309.822258 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.61424 -39.89963 -38.05332 -37.72981 -35.15742 -33.95744 -33.31110 -31.99650 -29.03175 -26.62024 -25.87436 -24.75117 -23.25033 -22.81940 -21.78109 -20.25584 -20.01052 -18.83639 -18.30363 -18.04596 -16.98360 -16.46937 -16.32713 -16.00910 -15.83462 -15.81319 -15.54905 -15.09360 -14.76664 -14.54594 -14.33578 -13.46041 -13.32249 -13.09067 -12.95084 -12.78105 -12.66953 -12.58179 -12.32590 -12.21093 -11.92996 -11.67925 -11.21768 -11.11190 -11.03532 -11.02477 -10.89491 -10.82873 -10.53037 -9.96321 -8.94372 -7.92950 -5.25758 1.45408 1.47887 1.54123 1.58094 2.07713 2.45012 2.78779 2.91005 3.16972 3.28962 3.36711 3.40923 3.58634 3.84164 3.88550 4.12180 4.16860 4.30604 4.40469 4.49993 4.56064 4.64765 4.69026 4.74044 4.77544 4.79484 4.81579 4.87657 4.96409 5.02851 5.04800 5.10210 5.14190 5.24155 5.30300 5.42164 5.76122 5.88365 6.67124 6.88977 6.92459 7.36647 7.55769 8.55643 9.23897 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.013401 B = 0.006067 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.932279 B = 4614.159170 C = 6144.126574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.054 4.054 3 Si 0.977 3.023 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.232 4.232 8 H 0.073 0.927 9 N -0.629 5.629 10 C 0.163 3.837 11 C 0.148 3.852 12 C -0.103 4.103 13 C 0.090 3.910 14 O -0.591 6.591 15 N -0.683 5.683 16 C 0.539 3.461 17 O -0.570 6.570 18 C -0.144 4.144 19 H 0.148 0.852 20 C -0.097 4.097 21 C -0.218 4.218 22 C -0.099 4.099 23 C -0.131 4.131 24 C 0.118 3.882 25 H 0.252 0.748 26 H 0.034 0.966 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.397 0.603 33 H 0.409 0.591 34 H 0.131 0.869 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.035 0.965 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.724 -10.942 -12.328 16.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.247 4.247 3 Si 0.805 3.195 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.359 4.359 8 H 0.091 0.909 9 N -0.355 5.355 10 C 0.037 3.963 11 C 0.059 3.941 12 C -0.143 4.143 13 C 0.013 3.987 14 O -0.400 6.400 15 N -0.333 5.333 16 C 0.327 3.673 17 O -0.449 6.449 18 C -0.165 4.165 19 H 0.166 0.834 20 C -0.134 4.134 21 C -0.219 4.219 22 C -0.135 4.135 23 C -0.168 4.168 24 C -0.008 4.008 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.246 0.754 33 H 0.245 0.755 34 H 0.149 0.851 35 H 0.095 0.905 36 H 0.127 0.873 37 H 0.137 0.863 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.053 0.947 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.662 -11.169 -11.525 16.135 hybrid contribution -0.211 1.464 0.216 1.494 sum -1.874 -9.706 -11.309 15.020 Atomic orbital electron populations 1.69935 1.06048 1.25891 1.57512 1.25479 0.96587 1.00215 1.02468 0.85195 0.77275 0.79015 0.78055 1.20344 1.21454 1.20895 1.19127 0.90294 0.82756 1.43763 0.90873 1.45752 1.03704 0.99932 1.86066 1.22372 0.87977 0.89480 0.96436 1.21545 0.96728 0.94777 0.81012 1.21503 0.95933 0.96435 1.00425 1.21955 0.93200 0.86056 0.97527 1.86418 1.42527 1.41273 1.69771 1.45308 1.40139 1.42516 1.05299 1.20145 0.78462 0.79751 0.88973 1.90633 1.45813 1.36557 1.71879 1.22003 0.97633 1.06440 0.90442 0.83394 1.22657 0.95192 0.93351 1.02250 1.21368 1.03747 0.90414 1.06360 1.22877 1.02710 0.96586 0.91371 1.22599 0.99520 0.94788 0.99917 1.22716 0.96286 0.84740 0.97099 0.93946 0.94831 0.92200 0.92146 0.90469 0.92519 0.93232 0.75361 0.75469 0.85074 0.90503 0.87318 0.86320 0.88421 0.89812 0.94708 0.93751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.55 11.50 21.65 0.25 -54.30 16 2 C -0.05 -3.00 5.50 84.86 0.47 -2.53 16 3 Si 0.98 45.11 29.55 68.60 2.03 47.14 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.23 -13.13 10.74 84.03 0.90 -12.23 16 8 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.63 -32.69 3.78 -737.94 -2.79 -35.48 16 10 C 0.16 7.44 6.79 83.26 0.57 8.01 16 11 C 0.15 5.65 0.77 4.16 0.00 5.65 16 12 C -0.10 -3.47 5.18 30.60 0.16 -3.31 16 13 C 0.09 2.47 6.86 71.98 0.49 2.96 16 14 O -0.59 -15.25 13.66 -148.98 -2.03 -17.29 16 15 N -0.68 -23.25 4.11 -422.00 -1.74 -24.98 16 16 C 0.54 18.50 7.19 87.66 0.63 19.13 16 17 O -0.57 -23.33 14.50 -3.02 -0.04 -23.37 16 18 C -0.14 -3.80 6.19 -11.54 -0.07 -3.87 16 19 H 0.15 2.96 8.14 -2.38 -0.02 2.94 16 20 C -0.10 -2.44 10.23 30.59 0.31 -2.13 16 21 C -0.22 -5.31 5.05 -52.19 -0.26 -5.58 16 22 C -0.10 -1.72 10.53 30.60 0.32 -1.39 16 23 C -0.13 -3.11 10.16 30.59 0.31 -2.80 16 24 C 0.12 5.36 7.55 83.17 0.63 5.99 16 25 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 26 H 0.03 1.57 7.92 -2.39 -0.02 1.55 16 27 H 0.06 2.91 7.11 -2.39 -0.02 2.90 16 28 H 0.06 2.22 7.83 -2.39 -0.02 2.20 16 29 H 0.08 2.57 7.87 -2.39 -0.02 2.55 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.28 7.34 -2.39 -0.02 1.27 16 32 H 0.40 5.93 9.12 -74.06 -0.68 5.26 16 33 H 0.41 12.47 8.80 -92.71 -0.82 11.65 16 34 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 39 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.03 1.69 6.80 -2.39 -0.02 1.67 16 41 H 0.04 1.97 8.10 -2.39 -0.02 1.95 16 Total: -1.00 -71.36 343.35 -0.31 -71.68 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: -0.45 Total: 28.70 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 4.46 Total: 7.91 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -4.28 Total: -114.77 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -2.08 Total: -40.66 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -71.36 -0.31 -71.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570766521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.978 kcal (2) G-P(sol) polarization free energy of solvation -71.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds