Wall clock time and date at job start Tue Mar 31 2020 02:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00537 * 2 1 4 4 H 1.48509 * 109.47040 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47602 * 119.99635 * 3 2 1 6 6 H 1.48506 * 109.47358 * 239.99934 * 3 2 1 7 7 C 1.37888 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99868 * 185.42063 * 7 2 1 9 9 C 1.50695 * 119.99960 * 5.41800 * 7 2 1 10 10 C 1.53004 * 115.54938 * 279.43770 * 9 7 2 11 11 N 1.46494 * 109.46901 * 294.80496 * 10 9 7 12 12 C 1.34785 * 119.99768 * 184.78915 * 11 10 9 13 13 O 1.21279 * 120.00013 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99687 * 179.97438 * 12 11 10 15 15 C 1.54267 * 112.65317 * 61.02080 * 14 12 11 16 16 N 1.48497 * 104.74541 * 99.05610 * 15 14 12 17 17 C 1.48513 * 104.20244 * 39.77746 * 16 15 14 18 18 C 1.54264 * 104.74195 * 320.21581 * 17 16 15 19 19 H 1.08997 * 112.13552 * 261.24379 * 18 17 16 20 20 C 1.54393 * 109.34667 * 134.82318 * 18 17 16 21 21 O 1.44376 * 104.92026 * 272.63678 * 20 18 17 22 22 C 1.45415 * 105.74633 * 319.66774 * 21 20 18 23 23 C 1.52994 * 117.50009 * 133.72400 * 9 7 2 24 24 C 1.52996 * 60.00211 * 252.51482 * 23 9 7 25 25 H 0.96999 * 120.00371 * 174.99934 * 1 2 3 26 26 H 1.09000 * 109.47049 * 54.80581 * 10 9 7 27 27 H 1.09004 * 109.46839 * 174.80623 * 10 9 7 28 28 H 0.96995 * 120.00271 * 4.78798 * 11 10 9 29 29 H 1.08996 * 110.37983 * 217.87076 * 15 14 12 30 30 H 1.08996 * 110.38589 * 340.23308 * 15 14 12 31 31 H 1.00901 * 111.00140 * 280.23934 * 16 15 14 32 32 H 1.09002 * 110.37761 * 79.03491 * 17 16 15 33 33 H 1.09006 * 110.38288 * 201.39590 * 17 16 15 34 34 H 1.08999 * 110.35297 * 31.50012 * 20 18 17 35 35 H 1.09005 * 110.34564 * 153.66674 * 20 18 17 36 36 H 1.09003 * 110.15606 * 281.38803 * 22 21 20 37 37 H 1.09004 * 111.03001 * 158.78393 * 22 21 20 38 38 H 1.09004 * 117.50008 * 0.02562 * 23 9 7 39 39 H 1.09006 * 117.49894 * 145.02203 * 23 9 7 40 40 H 1.09004 * 117.49591 * 252.50845 * 24 23 9 41 41 H 1.08994 * 117.49969 * 107.49642 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0808 -1.1962 0.0889 9 6 1.2560 -2.4963 -0.1221 10 6 0.6213 -3.0168 1.1691 11 7 1.6747 -3.3515 2.1306 12 6 1.3550 -3.9221 3.3091 13 8 0.1952 -4.1588 3.5733 14 6 2.4387 -4.2670 4.2978 15 6 3.2296 -3.0288 4.7684 16 7 2.6346 -2.6774 6.0828 17 6 2.3933 -3.9892 6.7360 18 6 1.8838 -4.9040 5.6031 19 1 0.7973 -4.9909 5.6027 20 6 2.6032 -6.2676 5.6841 21 8 3.8134 -6.0957 4.9158 22 6 3.4332 -5.3134 3.7505 23 6 1.7958 -3.5310 -1.1115 24 6 0.5121 -2.7628 -1.4323 25 1 -0.4850 -0.8368 -0.0732 26 1 -0.0254 -2.2478 1.5917 27 1 0.0321 -3.9075 0.9510 28 1 2.6023 -3.1626 1.9191 29 1 4.2854 -3.2739 4.8829 30 1 3.1040 -2.2075 4.0630 31 1 1.7716 -2.1683 5.9646 32 1 3.3207 -4.3819 7.1530 33 1 1.6369 -3.8921 7.5148 34 1 2.8428 -6.5089 6.7197 35 1 1.9827 -7.0501 5.2471 36 1 2.9452 -5.9507 3.0131 37 1 4.2999 -4.8193 3.3113 38 1 2.6927 -3.2700 -1.6734 39 1 1.6991 -4.5829 -0.8425 40 1 -0.4292 -3.3094 -1.3744 41 1 0.5642 -1.9964 -2.2055 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580047485.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:10 Heat of formation + Delta-G solvation = -57.746980 kcal Electronic energy + Delta-G solvation = -23083.772334 eV Core-core repulsion = 19770.912506 eV Total energy + Delta-G solvation = -3312.859828 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.09628 -38.58948 -37.01825 -36.21400 -33.67515 -32.03480 -31.08012 -30.56096 -26.47110 -26.14236 -24.93176 -23.56167 -22.64755 -21.50131 -20.93285 -19.81856 -19.02465 -17.72422 -16.66047 -16.28571 -15.62437 -15.43727 -15.34353 -15.18529 -14.69327 -14.24911 -14.04174 -13.82137 -13.31260 -12.94632 -12.59480 -12.42485 -12.30387 -12.11809 -11.80893 -11.68591 -11.32727 -11.04093 -11.01333 -10.99341 -10.86915 -10.58878 -10.19761 -10.09923 -9.82853 -9.50463 -8.81290 -8.75655 -8.60918 -8.49923 -8.34020 -6.47095 -4.24742 2.84972 3.35943 3.36974 3.43726 3.55694 3.82218 4.03805 4.12392 4.40734 4.69715 4.77852 4.85808 4.92200 4.98652 5.13978 5.19702 5.22087 5.43779 5.48295 5.52001 5.53150 5.60755 5.72318 5.76939 5.86840 5.98199 6.03496 6.13967 6.26055 6.43107 6.47548 6.55001 6.56813 6.75718 6.98109 7.07884 7.14036 7.20233 8.01687 8.07308 8.25100 8.58363 8.72684 9.51785 10.91601 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020287 B = 0.005377 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.851138 B = 5206.006445 C = 5819.426500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.031 3.969 3 Si 1.065 2.935 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.578 4.578 8 H 0.054 0.946 9 C 0.005 3.995 10 C 0.158 3.842 11 N -0.694 5.694 12 C 0.524 3.476 13 O -0.551 6.551 14 C -0.149 4.149 15 C 0.056 3.944 16 N -0.663 5.663 17 C 0.049 3.951 18 C -0.142 4.142 19 H 0.112 0.888 20 C 0.056 3.944 21 O -0.371 6.371 22 C 0.067 3.933 23 C -0.193 4.193 24 C -0.173 4.173 25 H 0.275 0.725 26 H 0.066 0.934 27 H 0.041 0.959 28 H 0.403 0.597 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.342 0.658 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.968 -9.181 8.892 14.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.176 4.176 3 Si 0.893 3.107 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.615 4.615 8 H 0.072 0.928 9 C 0.004 3.996 10 C 0.034 3.966 11 N -0.342 5.342 12 C 0.308 3.692 13 O -0.430 6.430 14 C -0.155 4.155 15 C -0.075 4.075 16 N -0.289 5.289 17 C -0.081 4.081 18 C -0.162 4.162 19 H 0.130 0.870 20 C -0.021 4.021 21 O -0.289 6.289 22 C -0.010 4.010 23 C -0.230 4.230 24 C -0.212 4.212 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.059 0.941 28 H 0.237 0.763 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.158 0.842 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.765 -7.529 9.554 13.461 hybrid contribution -0.481 -1.927 -0.965 2.208 sum 5.285 -9.456 8.589 13.824 Atomic orbital electron populations 1.70742 1.06845 1.31674 1.43933 1.25774 0.96484 1.02328 0.93046 0.83592 0.74998 0.75498 0.76601 1.20745 1.21360 1.21391 1.21190 0.93841 0.89501 1.56974 0.92823 1.19326 0.98917 0.95314 0.86024 1.21076 0.88680 0.97561 0.89253 1.45875 1.11953 1.59919 1.16470 1.19792 0.89010 0.78094 0.82298 1.90649 1.20254 1.54883 1.77224 1.23478 0.96134 0.99771 0.96101 1.23158 0.98970 0.94488 0.90841 1.63212 1.30627 1.17269 1.17759 1.23106 1.00916 0.88319 0.95789 1.23884 1.02624 0.96169 0.93523 0.86975 1.23362 0.86115 0.95695 0.96969 1.89225 1.30393 1.73600 1.35687 1.23495 0.97503 0.91319 0.88726 1.22858 0.97793 0.95451 1.06892 1.22773 0.93751 1.02533 1.02100 0.91343 0.91538 0.94095 0.76277 0.88799 0.89563 0.84240 0.89679 0.90555 0.88582 0.92239 0.91822 0.87758 0.89962 0.91416 0.91323 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.31 13.61 55.43 0.75 -24.56 16 2 C 0.03 0.80 5.42 -17.82 -0.10 0.71 16 3 Si 1.07 23.63 29.91 -169.99 -5.08 18.55 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.58 -14.46 8.57 -34.44 -0.30 -14.76 16 8 H 0.05 1.33 7.82 -52.49 -0.41 0.92 16 9 C 0.01 0.11 0.91 -155.66 -0.14 -0.03 16 10 C 0.16 3.40 5.36 -4.04 -0.02 3.38 16 11 N -0.69 -12.72 5.28 -60.29 -0.32 -13.03 16 12 C 0.52 9.21 6.61 -10.98 -0.07 9.14 16 13 O -0.55 -11.56 15.62 5.56 0.09 -11.48 16 14 C -0.15 -2.04 0.91 -152.95 -0.14 -2.18 16 15 C 0.06 0.73 6.52 -2.28 -0.01 0.71 16 16 N -0.66 -8.56 7.62 -109.88 -0.84 -9.40 16 17 C 0.05 0.54 6.93 -2.27 -0.02 0.53 16 18 C -0.14 -1.75 3.71 -87.91 -0.33 -2.08 16 19 H 0.11 1.57 6.96 -51.93 -0.36 1.21 16 20 C 0.06 0.61 6.92 37.89 0.26 0.88 16 21 O -0.37 -4.72 11.66 -35.23 -0.41 -5.13 16 22 C 0.07 0.83 6.55 37.89 0.25 1.08 16 23 C -0.19 -3.82 9.95 -26.74 -0.27 -4.09 16 24 C -0.17 -3.74 8.96 -26.73 -0.24 -3.98 16 25 H 0.28 7.72 6.08 -40.82 -0.25 7.47 16 26 H 0.07 1.65 7.64 -51.93 -0.40 1.25 16 27 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 28 H 0.40 6.84 8.33 -40.82 -0.34 6.50 16 29 H 0.09 1.13 7.57 -51.93 -0.39 0.74 16 30 H 0.09 1.22 7.75 -51.93 -0.40 0.82 16 31 H 0.34 4.59 8.92 -39.29 -0.35 4.24 16 32 H 0.08 0.91 7.61 -51.93 -0.40 0.51 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 0.85 7.78 -51.93 -0.40 0.44 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.81 7.98 -51.93 -0.41 0.39 16 37 H 0.10 1.11 7.73 -51.93 -0.40 0.71 16 38 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 41 H 0.09 1.99 8.14 -51.93 -0.42 1.56 16 LS Contribution 331.46 15.07 5.00 5.00 Total: -1.00 -29.26 331.46 -8.20 -37.46 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -6.27 Total: 13.29 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -1.12 Total: -10.70 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -0.40 Total: -46.99 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.32 Total: -16.61 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -5.08 Total: 18.55 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.26 -8.20 -37.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047485.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.284 kcal (2) G-P(sol) polarization free energy of solvation -29.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds