Wall clock time and date at job start Tue Mar 31 2020 01:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36940 * 120.00106 * 2 1 4 4 H 1.08005 * 119.99888 * 322.04932 * 3 2 1 5 5 C 1.38810 * 120.00257 * 142.05079 * 3 2 1 6 6 N 1.31617 * 120.00711 * 157.02165 * 5 3 2 7 7 Si 1.86800 * 119.99444 * 337.01686 * 5 3 2 8 8 H 1.48502 * 109.47133 * 95.68588 * 7 5 3 9 9 H 1.48505 * 109.47316 * 215.68121 * 7 5 3 10 10 H 1.48496 * 109.47619 * 335.68556 * 7 5 3 11 11 C 1.46502 * 120.00190 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.46981 * 89.99331 * 11 2 1 13 13 N 1.46502 * 109.46981 * 179.97438 * 12 11 2 14 14 C 1.34783 * 119.99832 * 180.02562 * 13 12 11 15 15 O 1.21554 * 119.99987 * 0.02562 * 14 13 12 16 16 C 1.47836 * 119.99732 * 180.02562 * 14 13 12 17 17 C 1.39577 * 120.14498 * 180.02562 * 16 14 13 18 18 C 1.37957 * 119.85773 * 180.02562 * 17 16 14 19 19 C 1.38363 * 120.13958 * 0.02562 * 18 17 16 20 20 C 1.50698 * 119.85094 * 179.97438 * 19 18 17 21 21 F 1.39902 * 109.47366 * 89.99868 * 20 19 18 22 22 C 1.38353 * 120.29625 * 0.22993 * 19 18 17 23 23 C 1.37965 * 120.14368 * 359.48981 * 22 19 18 24 24 H 1.09003 * 109.46671 * 265.65427 * 1 2 3 25 25 H 1.09000 * 109.46864 * 25.64601 * 1 2 3 26 26 H 1.08993 * 109.47165 * 145.64840 * 1 2 3 27 27 H 0.96994 * 120.00352 * 179.97438 * 6 5 3 28 28 H 1.08995 * 109.46575 * 330.00095 * 11 2 1 29 29 H 1.08991 * 109.47067 * 209.99854 * 11 2 1 30 30 H 1.09003 * 109.47139 * 60.00364 * 12 11 2 31 31 H 1.08994 * 109.47502 * 300.00680 * 12 11 2 32 32 H 0.96992 * 119.99945 * 0.02562 * 13 12 11 33 33 H 1.07998 * 120.07177 * 0.02562 * 17 16 14 34 34 H 1.07998 * 119.92970 * 180.02562 * 18 17 16 35 35 H 1.09003 * 109.47435 * 210.00038 * 20 19 18 36 36 H 1.08997 * 109.47376 * 330.00421 * 20 19 18 37 37 H 1.08001 * 119.93000 * 179.74030 * 22 19 18 38 38 H 1.07998 * 120.07112 * 180.24743 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7810 2.0224 -0.5752 5 6 3.3177 1.3131 0.7392 6 7 4.2046 2.2304 0.4163 7 14 3.6307 0.1822 2.1927 8 1 4.4683 -0.9640 1.7567 9 1 4.3373 0.9333 3.2612 10 1 2.3355 -0.3220 2.7157 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4433 13 7 3.1855 -2.9782 -1.4438 14 6 3.5229 -3.5610 -2.6114 15 8 3.2193 -3.0340 -3.6638 16 6 4.2621 -4.8413 -2.6119 17 6 4.6136 -5.4473 -3.8192 18 6 5.3029 -6.6422 -3.8128 19 6 5.6455 -7.2402 -2.6130 20 6 6.3981 -8.5458 -2.6136 21 9 7.7737 -8.2912 -2.6118 22 6 5.2956 -6.6475 -1.4128 23 6 4.6112 -5.4496 -1.4052 24 1 -0.3633 -0.0779 1.0248 25 1 -0.3633 0.9264 -0.4448 26 1 -0.3633 -0.8484 -0.5798 27 1 5.0205 2.3194 0.9331 28 1 1.6084 -2.0285 0.5129 29 1 3.1499 -1.1386 0.5133 30 1 3.0415 -0.9499 -1.9569 31 1 1.5000 -1.8398 -1.9571 32 1 3.4280 -3.3985 -0.6041 33 1 4.3464 -4.9817 -4.7563 34 1 5.5758 -7.1119 -4.7462 35 1 6.1334 -9.1182 -1.7245 36 1 6.1355 -9.1162 -3.5045 37 1 5.5624 -7.1216 -0.4798 38 1 4.3422 -4.9860 -0.4676 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663342356.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:57 Heat of formation + Delta-G solvation = -59.608700 kcal Electronic energy + Delta-G solvation = -20987.019615 eV Core-core repulsion = 17550.618751 eV Total energy + Delta-G solvation = -3436.400863 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.59127 -41.31678 -39.53124 -38.09317 -35.79115 -33.84568 -33.42941 -32.09239 -30.36864 -28.14836 -27.70947 -25.05801 -23.78743 -23.28819 -22.74418 -21.43292 -19.41711 -18.51602 -17.64008 -17.41183 -17.15377 -16.78807 -16.71057 -16.41581 -16.00305 -15.67822 -15.32647 -15.18784 -15.05426 -14.58815 -14.47316 -14.31250 -13.93615 -13.85065 -13.47529 -13.30727 -12.76694 -12.51331 -12.35256 -12.30153 -12.11247 -11.94973 -11.83096 -11.59701 -11.17070 -10.69564 -10.31283 -10.05461 -9.95948 -8.86563 -8.23794 -5.65331 -0.34541 0.31233 1.27127 1.41913 1.53880 1.70371 2.00804 2.39870 2.73572 3.02343 3.36816 3.47622 3.67604 3.73733 3.90223 4.06698 4.08963 4.13517 4.17391 4.34728 4.46713 4.51602 4.64566 4.69914 4.81057 4.85276 4.95620 4.96351 5.07788 5.11774 5.16994 5.26635 5.32321 5.37261 5.78649 5.88992 6.12941 6.42934 6.91631 7.09048 7.55777 7.96462 8.95795 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.023196 B = 0.003643 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.799053 B = 7684.745430 C = 8226.943035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.621 5.621 3 C -0.273 4.273 4 H 0.037 0.963 5 C -0.023 4.023 6 N -0.947 5.947 7 Si 0.948 3.052 8 H -0.263 1.263 9 H -0.307 1.307 10 H -0.252 1.252 11 C 0.129 3.871 12 C 0.115 3.885 13 N -0.709 5.709 14 C 0.548 3.452 15 O -0.585 6.585 16 C -0.141 4.141 17 C -0.079 4.079 18 C -0.105 4.105 19 C -0.115 4.115 20 C 0.101 3.899 21 F -0.229 7.229 22 C -0.103 4.103 23 C -0.089 4.089 24 H 0.025 0.975 25 H 0.039 0.961 26 H 0.059 0.941 27 H 0.264 0.736 28 H 0.087 0.913 29 H 0.044 0.956 30 H 0.031 0.969 31 H 0.063 0.937 32 H 0.412 0.588 33 H 0.127 0.873 34 H 0.156 0.844 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.163 0.837 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.553 -26.966 -1.696 27.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.346 5.346 3 C -0.403 4.403 4 H 0.054 0.946 5 C -0.220 4.220 6 N -0.590 5.590 7 Si 0.775 3.225 8 H -0.189 1.189 9 H -0.236 1.236 10 H -0.176 1.176 11 C 0.003 3.997 12 C -0.011 4.011 13 N -0.361 5.361 14 C 0.337 3.663 15 O -0.466 6.466 16 C -0.144 4.144 17 C -0.098 4.098 18 C -0.123 4.123 19 C -0.116 4.116 20 C 0.047 3.953 21 F -0.210 7.210 22 C -0.121 4.121 23 C -0.107 4.107 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.250 0.750 33 H 0.145 0.855 34 H 0.173 0.827 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.180 0.820 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.437 -26.464 -2.366 26.608 hybrid contribution 0.468 0.609 0.633 0.995 sum 1.905 -25.855 -1.733 25.983 Atomic orbital electron populations 1.21248 0.81700 1.00387 0.98958 1.44056 1.02588 1.01139 1.86818 1.18682 1.06516 0.91492 1.23628 0.94578 1.26218 0.96442 0.98895 1.00407 1.70033 1.09193 1.39127 1.40656 0.85781 0.78645 0.78416 0.79633 1.18923 1.23555 1.17554 1.21408 0.96801 0.88291 0.93194 1.21870 0.95343 0.83504 1.00387 1.45841 1.57479 1.23947 1.08836 1.18859 0.78814 0.85226 0.83449 1.90741 1.56813 1.66321 1.32745 1.19995 1.03209 0.95020 0.96201 1.21357 0.95895 0.95166 0.97356 1.21309 0.97235 0.94487 0.99273 1.20812 0.98801 0.98227 0.93739 1.21131 0.73900 0.93085 1.07189 1.92795 1.34095 1.95755 1.98375 1.21380 0.96920 0.94665 0.99095 1.21583 0.96625 0.95606 0.96928 0.95646 0.94201 0.92261 0.92669 0.89463 0.93810 0.94999 0.91891 0.75005 0.85514 0.82681 0.86862 0.87254 0.81985 0.83415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.54 10.70 127.77 1.37 5.91 16 2 N -0.62 -28.78 2.47 -726.95 -1.79 -30.57 16 3 C -0.27 -15.63 9.88 84.03 0.83 -14.79 16 4 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 5 C -0.02 -1.32 5.29 84.86 0.45 -0.87 16 6 N -0.95 -59.44 13.97 21.65 0.30 -59.14 16 7 Si 0.95 44.00 25.10 68.60 1.72 45.72 16 8 H -0.26 -11.10 6.68 99.48 0.66 -10.43 16 9 H -0.31 -14.58 7.11 99.48 0.71 -13.87 16 10 H -0.25 -10.91 7.11 99.48 0.71 -10.20 16 11 C 0.13 5.05 4.65 86.38 0.40 5.46 16 12 C 0.12 4.49 6.00 86.38 0.52 5.01 16 13 N -0.71 -22.35 5.51 -465.97 -2.57 -24.92 16 14 C 0.55 18.53 7.77 86.78 0.67 19.20 16 15 O -0.58 -24.90 16.35 -3.89 -0.06 -24.96 16 16 C -0.14 -3.63 5.87 -20.09 -0.12 -3.75 16 17 C -0.08 -1.84 9.60 22.53 0.22 -1.63 16 18 C -0.11 -1.76 9.68 22.23 0.22 -1.54 16 19 C -0.12 -1.63 5.60 -19.81 -0.11 -1.74 16 20 C 0.10 0.90 7.67 71.24 0.55 1.45 16 21 F -0.23 -3.77 17.34 44.97 0.78 -2.99 16 22 C -0.10 -1.47 9.68 22.23 0.22 -1.25 16 23 C -0.09 -1.66 9.54 22.53 0.21 -1.44 16 24 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.04 1.53 8.00 -2.39 -0.02 1.51 16 26 H 0.06 1.85 8.10 -2.39 -0.02 1.83 16 27 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 28 H 0.09 2.72 8.07 -2.39 -0.02 2.70 16 29 H 0.04 1.85 3.38 -2.39 -0.01 1.85 16 30 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 2.42 8.14 -2.39 -0.02 2.41 16 32 H 0.41 9.93 6.51 -92.71 -0.60 9.32 16 33 H 0.13 3.20 7.65 -2.91 -0.02 3.18 16 34 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 35 H 0.11 0.42 8.08 -2.39 -0.02 0.40 16 36 H 0.11 0.47 8.08 -2.39 -0.02 0.46 16 37 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 38 H 0.15 2.12 6.41 -2.91 -0.02 2.11 16 Total: -1.00 -77.31 324.75 4.23 -73.08 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.43 Total: 13.76 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 5.42 Total: 10.01 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -4.06 Total: -114.63 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.06 Total: -24.96 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.78 Total: -2.99 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.72 Total: 45.72 kcal Total: -77.31 4.23 -73.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663342356.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.474 kcal (2) G-P(sol) polarization free energy of solvation -77.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds