Wall clock time and date at job start Tue Mar 31 2020 02:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 120.00088 * 2 1 4 4 H 1.48498 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.48489 * 109.47301 * 300.00286 * 3 2 1 6 6 H 1.48505 * 109.46863 * 60.00502 * 3 2 1 7 7 C 1.38809 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00581 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00251 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00407 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47073 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47119 * 64.99436 * 11 10 9 13 13 N 1.46507 * 109.47043 * 305.00011 * 11 10 9 14 14 C 1.34775 * 120.00016 * 155.00258 * 13 11 10 15 15 O 1.21286 * 119.99642 * 359.97438 * 14 13 11 16 16 C 1.50693 * 120.00174 * 179.97438 * 14 13 11 17 17 H 1.09004 * 115.51209 * 325.37362 * 16 14 13 18 18 C 1.53003 * 117.38894 * 110.66712 * 16 14 13 19 19 H 1.08999 * 119.80451 * 355.38809 * 18 16 14 20 20 C 1.54472 * 118.06755 * 198.10871 * 18 16 14 21 21 O 1.44425 * 104.80190 * 321.12498 * 20 18 16 22 22 C 1.44421 * 105.27967 * 319.48952 * 21 20 18 23 23 C 1.52998 * 117.43468 * 179.97438 * 16 14 13 24 24 H 1.09001 * 119.80826 * 5.71425 * 23 16 14 25 25 C 1.52999 * 109.47152 * 184.99954 * 11 10 9 26 26 C 1.53002 * 117.49879 * 248.74755 * 25 11 10 27 27 C 1.52995 * 117.49981 * 180.08887 * 25 11 10 28 28 H 0.97002 * 120.00185 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.46943 * 59.99323 * 10 9 7 31 31 H 1.08999 * 109.46501 * 299.99737 * 10 9 7 32 32 H 0.96998 * 119.99926 * 334.99645 * 13 11 10 33 33 H 1.08999 * 110.37330 * 79.95879 * 20 18 16 34 34 H 1.09007 * 110.37121 * 202.18917 * 20 18 16 35 35 H 1.08997 * 110.37554 * 281.67915 * 22 21 20 36 36 H 1.09004 * 110.37353 * 159.34062 * 22 21 20 37 37 H 1.08997 * 115.54767 * 34.41256 * 25 11 10 38 38 H 1.08996 * 117.49676 * 359.97438 * 26 25 11 39 39 H 1.09001 * 117.49700 * 145.01811 * 26 25 11 40 40 H 1.09005 * 117.50158 * 214.98097 * 27 25 11 41 41 H 1.08999 * 117.50259 * 359.97250 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0638 -4.8197 -0.0022 12 1 0.4979 -4.8134 -0.9338 13 7 0.1438 -4.6763 1.1289 14 6 -1.0806 -5.2371 1.0770 15 8 -1.4210 -5.8601 0.0937 16 6 -2.0266 -5.0901 2.2407 17 1 -1.5606 -5.0782 3.2260 18 6 -3.2639 -4.2136 2.0356 19 1 -3.3913 -3.6664 1.1016 20 6 -4.0075 -3.7013 3.2889 21 8 -3.9738 -4.8081 4.2161 22 6 -4.2122 -5.9846 3.4132 23 6 -3.4017 -5.7498 2.1190 24 1 -3.6276 -6.3765 1.2562 25 6 1.8246 -6.1412 0.1235 26 6 1.8345 -7.0691 -1.0930 27 6 1.0020 -7.4311 0.1394 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3881 -0.0016 30 1 2.6841 -3.7149 0.8888 31 1 2.6853 -3.7141 -0.8912 32 1 0.4160 -4.1778 1.9152 33 1 -3.4920 -2.8380 3.7095 34 1 -5.0371 -3.4437 3.0403 35 1 -5.2736 -6.0791 3.1841 36 1 -3.8539 -6.8753 3.9294 37 1 2.7231 -6.1096 0.7397 38 1 1.2988 -6.7383 -1.9827 39 1 2.7395 -7.6482 -1.2768 40 1 1.3595 -8.2484 0.7659 41 1 -0.0812 -7.3384 0.0608 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670507701.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:50 Heat of formation + Delta-G solvation = -9.935124 kcal Electronic energy + Delta-G solvation = -22289.184859 eV Core-core repulsion = 18978.398308 eV Total energy + Delta-G solvation = -3310.786550 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.75754 -39.29836 -37.13183 -35.01811 -34.28894 -33.37235 -31.11733 -28.80079 -28.31242 -26.26234 -24.05338 -22.41767 -22.02351 -21.47548 -20.70969 -20.03745 -19.70547 -17.73369 -17.05273 -16.18723 -16.03815 -15.52647 -15.23860 -14.99793 -14.92944 -14.43214 -13.90780 -13.47945 -13.22098 -13.05941 -12.80596 -12.66605 -12.16023 -11.78794 -11.69911 -11.63815 -11.24411 -11.05371 -10.91883 -10.84632 -10.32598 -10.27453 -10.17125 -10.11725 -9.94022 -9.78684 -9.71376 -9.45617 -8.94533 -8.63106 -6.98879 -5.81047 -3.10707 2.62288 3.19623 3.40499 3.46453 3.48460 3.63988 3.85321 4.14559 4.53045 4.59534 4.61298 4.77790 4.82460 4.89200 5.15401 5.18829 5.27235 5.29968 5.35313 5.47655 5.50346 5.53482 5.58104 5.70911 5.77619 5.84551 5.89568 5.90043 6.02502 6.08540 6.21617 6.35709 6.47935 6.51512 6.61076 6.66297 6.93470 7.66227 7.86743 8.36745 8.52721 9.48889 10.04173 10.39867 11.41354 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.012005 B = 0.005665 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.787816 B = 4941.568364 C = 6962.483606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.169 3.831 12 H 0.087 0.913 13 N -0.700 5.700 14 C 0.550 3.450 15 O -0.547 6.547 16 C -0.142 4.142 17 H 0.123 0.877 18 C -0.166 4.166 19 H 0.132 0.868 20 C 0.072 3.928 21 O -0.375 6.375 22 C 0.072 3.928 23 C -0.172 4.172 24 H 0.134 0.866 25 C -0.163 4.163 26 C -0.171 4.171 27 C -0.185 4.185 28 H 0.255 0.745 29 H 0.386 0.614 30 H 0.025 0.975 31 H 0.036 0.964 32 H 0.406 0.594 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.972 -13.538 5.557 15.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.064 3.936 12 H 0.105 0.895 13 N -0.349 5.349 14 C 0.336 3.664 15 O -0.426 6.426 16 C -0.163 4.163 17 H 0.141 0.859 18 C -0.185 4.185 19 H 0.150 0.850 20 C -0.005 4.005 21 O -0.294 6.294 22 C -0.005 4.005 23 C -0.191 4.191 24 H 0.152 0.848 25 C -0.183 4.183 26 C -0.209 4.209 27 C -0.222 4.222 28 H 0.064 0.936 29 H 0.220 0.780 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.241 0.759 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.028 -13.825 5.087 15.565 hybrid contribution 0.431 1.239 0.068 1.314 sum -4.597 -12.585 5.154 14.356 Atomic orbital electron populations 1.69672 1.05103 1.25555 1.57553 1.24738 0.95514 0.97691 1.02824 0.86120 0.78803 0.84077 0.77186 1.20549 1.21865 1.21856 1.19262 0.91075 0.84026 1.42940 0.91073 1.42348 1.05987 0.99717 1.89578 1.20920 0.93020 0.85087 0.98990 1.20811 0.90121 0.92789 0.89847 0.89490 1.45858 1.14245 1.53902 1.20848 1.19332 0.81804 0.78344 0.86895 1.90595 1.76409 1.42077 1.33512 1.22044 0.89777 1.04945 0.99504 0.85899 1.23989 0.98948 0.93924 1.01591 0.84991 1.22986 0.99360 0.90549 0.87578 1.89158 1.93158 1.16047 1.31055 1.22968 0.98333 0.89574 0.89627 1.23985 0.96964 0.97006 1.01109 0.84775 1.22656 1.01506 0.91469 1.02678 1.22895 1.02027 1.03179 0.92781 1.23261 1.00674 0.97455 1.00794 0.93558 0.78019 0.95715 0.94667 0.75930 0.88055 0.90831 0.91027 0.88701 0.87874 0.88777 0.89207 0.89905 0.86506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.54 13.06 55.49 0.72 -26.82 16 2 C -0.01 -0.32 5.50 -17.44 -0.10 -0.42 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.73 -17.93 5.43 -59.91 -0.33 -18.25 16 10 C 0.15 2.88 5.80 -4.04 -0.02 2.85 16 11 C 0.17 2.86 2.43 -67.93 -0.17 2.69 16 12 H 0.09 1.68 7.33 -51.93 -0.38 1.29 16 13 N -0.70 -11.24 4.50 -53.81 -0.24 -11.49 16 14 C 0.55 8.87 6.94 -10.99 -0.08 8.79 16 15 O -0.55 -10.06 13.37 5.55 0.07 -9.99 16 16 C -0.14 -1.93 5.56 -91.77 -0.51 -2.44 16 17 H 0.12 1.56 8.06 -51.93 -0.42 1.15 16 18 C -0.17 -2.16 6.95 -89.08 -0.62 -2.78 16 19 H 0.13 1.87 8.14 -51.93 -0.42 1.45 16 20 C 0.07 0.83 7.53 37.93 0.29 1.11 16 21 O -0.38 -4.65 11.31 -35.23 -0.40 -5.05 16 22 C 0.07 0.73 7.54 37.95 0.29 1.01 16 23 C -0.17 -2.06 6.68 -89.07 -0.60 -2.66 16 24 H 0.13 1.66 7.82 -51.93 -0.41 1.25 16 25 C -0.16 -2.34 5.36 -90.62 -0.49 -2.83 16 26 C -0.17 -2.28 10.18 -26.69 -0.27 -2.55 16 27 C -0.18 -2.57 9.74 -26.70 -0.26 -2.83 16 28 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.39 10.07 7.33 -40.82 -0.30 9.77 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.41 6.31 8.60 -40.82 -0.35 5.96 16 33 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.10 1.38 8.11 -51.93 -0.42 0.96 16 38 H 0.09 1.32 8.05 -51.93 -0.42 0.90 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.12 1.87 5.02 -51.93 -0.26 1.61 16 LS Contribution 338.49 15.07 5.10 5.10 Total: -1.00 -30.94 338.49 -9.08 -40.02 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -6.31 Total: 16.24 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -2.68 Total: -6.80 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 0.16 Total: -56.56 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.32 Total: -15.04 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.94 -9.08 -40.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670507701.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.087 kcal (2) G-P(sol) polarization free energy of solvation -30.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds