Wall clock time and date at job start Tue Mar 31 2020 02:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 120.00088 * 2 1 4 4 H 1.48498 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.48489 * 109.47301 * 300.00286 * 3 2 1 6 6 H 1.48505 * 109.46863 * 60.00502 * 3 2 1 7 7 C 1.38809 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00581 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00251 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00407 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47073 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47119 * 64.99436 * 11 10 9 13 13 N 1.46507 * 109.47043 * 305.00011 * 11 10 9 14 14 C 1.34775 * 120.00016 * 155.00258 * 13 11 10 15 15 O 1.21286 * 119.99642 * 359.97438 * 14 13 11 16 16 C 1.50693 * 120.00174 * 179.97438 * 14 13 11 17 17 H 1.09004 * 115.51209 * 325.37362 * 16 14 13 18 18 C 1.53003 * 117.38894 * 110.66712 * 16 14 13 19 19 H 1.08999 * 119.80451 * 355.38809 * 18 16 14 20 20 C 1.54472 * 118.06755 * 198.10871 * 18 16 14 21 21 O 1.44425 * 104.80190 * 321.12498 * 20 18 16 22 22 C 1.44421 * 105.27967 * 319.48952 * 21 20 18 23 23 C 1.52998 * 117.43468 * 179.97438 * 16 14 13 24 24 H 1.09001 * 119.80826 * 5.71425 * 23 16 14 25 25 C 1.52999 * 109.47152 * 184.99954 * 11 10 9 26 26 C 1.53002 * 117.49879 * 248.74755 * 25 11 10 27 27 C 1.52995 * 117.49981 * 180.08887 * 25 11 10 28 28 H 0.97002 * 120.00185 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.46943 * 59.99323 * 10 9 7 31 31 H 1.08999 * 109.46501 * 299.99737 * 10 9 7 32 32 H 0.96998 * 119.99926 * 334.99645 * 13 11 10 33 33 H 1.08999 * 110.37330 * 79.95879 * 20 18 16 34 34 H 1.09007 * 110.37121 * 202.18917 * 20 18 16 35 35 H 1.08997 * 110.37554 * 281.67915 * 22 21 20 36 36 H 1.09004 * 110.37353 * 159.34062 * 22 21 20 37 37 H 1.08997 * 115.54767 * 34.41256 * 25 11 10 38 38 H 1.08996 * 117.49676 * 359.97438 * 26 25 11 39 39 H 1.09001 * 117.49700 * 145.01811 * 26 25 11 40 40 H 1.09005 * 117.50158 * 214.98097 * 27 25 11 41 41 H 1.08999 * 117.50259 * 359.97250 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0638 -4.8197 -0.0022 12 1 0.4979 -4.8134 -0.9338 13 7 0.1438 -4.6763 1.1289 14 6 -1.0806 -5.2371 1.0770 15 8 -1.4210 -5.8601 0.0937 16 6 -2.0266 -5.0901 2.2407 17 1 -1.5606 -5.0782 3.2260 18 6 -3.2639 -4.2136 2.0356 19 1 -3.3913 -3.6664 1.1016 20 6 -4.0075 -3.7013 3.2889 21 8 -3.9738 -4.8081 4.2161 22 6 -4.2122 -5.9846 3.4132 23 6 -3.4017 -5.7498 2.1190 24 1 -3.6276 -6.3765 1.2562 25 6 1.8246 -6.1412 0.1235 26 6 1.8345 -7.0691 -1.0930 27 6 1.0020 -7.4311 0.1394 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3881 -0.0016 30 1 2.6841 -3.7149 0.8888 31 1 2.6853 -3.7141 -0.8912 32 1 0.4160 -4.1778 1.9152 33 1 -3.4920 -2.8380 3.7095 34 1 -5.0371 -3.4437 3.0403 35 1 -5.2736 -6.0791 3.1841 36 1 -3.8539 -6.8753 3.9294 37 1 2.7231 -6.1096 0.7397 38 1 1.2988 -6.7383 -1.9827 39 1 2.7395 -7.6482 -1.2768 40 1 1.3595 -8.2484 0.7659 41 1 -0.0812 -7.3384 0.0608 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670507701.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:50 Heat of formation + Delta-G solvation = -30.457230 kcal Electronic energy + Delta-G solvation = -22290.074764 eV Core-core repulsion = 18978.398308 eV Total energy + Delta-G solvation = -3311.676456 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.83719 -40.49016 -38.39062 -36.63262 -35.31896 -34.97693 -32.99111 -29.93036 -29.66758 -27.39685 -25.88398 -23.67103 -23.12733 -22.95354 -21.69084 -21.32958 -20.89611 -19.31638 -18.62543 -17.46527 -16.99123 -16.75244 -16.64212 -16.28503 -16.04741 -15.87698 -15.24269 -15.13248 -14.78247 -14.54299 -14.12626 -13.71947 -13.51877 -13.20310 -12.85397 -12.80213 -12.70999 -12.58999 -12.47650 -12.28988 -12.04611 -11.85896 -11.36751 -11.32671 -11.18793 -11.09809 -11.00651 -10.85803 -10.55469 -9.96786 -9.02455 -7.94962 -5.24716 1.39926 1.48407 1.48947 1.58816 1.99861 2.55185 2.56924 2.88070 3.06658 3.39455 3.53499 3.61340 3.62101 3.72538 3.85847 3.93968 4.08124 4.12071 4.16826 4.29530 4.37950 4.44329 4.49585 4.62088 4.69206 4.77181 4.80806 4.83002 4.87819 4.88456 4.99849 5.03311 5.09663 5.27632 5.35826 5.49926 5.56720 5.73198 6.25659 6.56250 7.23254 7.33190 8.05144 8.29867 9.28162 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.012005 B = 0.005665 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.787816 B = 4941.568364 C = 6962.483606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.297 1.297 6 H -0.293 1.293 7 C -0.245 4.245 8 H 0.078 0.922 9 N -0.742 5.742 10 C 0.150 3.850 11 C 0.180 3.820 12 H 0.057 0.943 13 N -0.699 5.699 14 C 0.547 3.453 15 O -0.573 6.573 16 C -0.151 4.151 17 H 0.133 0.867 18 C -0.178 4.178 19 H 0.114 0.886 20 C 0.077 3.923 21 O -0.389 6.389 22 C 0.075 3.925 23 C -0.157 4.157 24 H 0.130 0.870 25 C -0.167 4.167 26 C -0.164 4.164 27 C -0.181 4.181 28 H 0.250 0.750 29 H 0.374 0.626 30 H 0.040 0.960 31 H 0.037 0.963 32 H 0.408 0.592 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.121 0.879 38 H 0.081 0.919 39 H 0.116 0.884 40 H 0.104 0.896 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.211 -14.480 6.576 16.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.224 1.224 6 H -0.220 1.220 7 C -0.376 4.376 8 H 0.096 0.904 9 N -0.386 5.386 10 C 0.023 3.977 11 C 0.075 3.925 12 H 0.076 0.924 13 N -0.347 5.347 14 C 0.335 3.665 15 O -0.454 6.454 16 C -0.172 4.172 17 H 0.151 0.849 18 C -0.197 4.197 19 H 0.132 0.868 20 C 0.001 3.999 21 O -0.308 6.308 22 C -0.002 4.002 23 C -0.175 4.175 24 H 0.147 0.853 25 C -0.186 4.186 26 C -0.201 4.201 27 C -0.218 4.218 28 H 0.059 0.941 29 H 0.206 0.794 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.244 0.756 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.130 0.870 37 H 0.139 0.861 38 H 0.099 0.901 39 H 0.135 0.865 40 H 0.123 0.877 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.228 -14.796 6.114 16.558 hybrid contribution 0.204 1.467 -0.299 1.511 sum -4.025 -13.328 5.815 15.088 Atomic orbital electron populations 1.69826 1.06588 1.25919 1.59337 1.25530 0.96330 1.00975 1.03560 0.85091 0.78309 0.79902 0.76528 1.18988 1.22415 1.21980 1.19659 0.91581 0.85089 1.41320 0.90363 1.42508 1.05633 1.00883 1.89531 1.21038 0.93354 0.83892 0.99403 1.20560 0.89532 0.93437 0.89007 0.92436 1.45849 1.14398 1.53910 1.20584 1.19749 0.81878 0.77646 0.87268 1.90581 1.76828 1.43247 1.34764 1.22009 0.89991 1.06490 0.98686 0.84895 1.24015 0.98868 0.94964 1.01825 0.86803 1.23012 1.00107 0.90314 0.86516 1.89144 1.93346 1.16756 1.31601 1.23155 0.99235 0.89413 0.88353 1.24058 0.95490 0.95893 1.02087 0.85251 1.22574 1.01889 0.90090 1.04090 1.22984 1.02713 1.02547 0.91905 1.23201 0.99405 0.97626 1.01573 0.94084 0.79374 0.94191 0.94530 0.75617 0.88272 0.88880 0.88768 0.86965 0.86090 0.90063 0.86541 0.87733 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.19 13.06 21.65 0.28 -57.91 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 3 Si 0.97 45.40 29.55 68.60 2.03 47.43 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 7 C -0.24 -13.32 9.99 84.03 0.84 -12.48 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.74 -36.70 5.43 -343.45 -1.87 -38.56 16 10 C 0.15 5.77 5.80 86.38 0.50 6.27 16 11 C 0.18 6.09 2.43 44.99 0.11 6.20 16 12 H 0.06 2.30 7.33 -2.39 -0.02 2.28 16 13 N -0.70 -22.74 4.50 -442.53 -1.99 -24.73 16 14 C 0.55 18.01 6.94 87.65 0.61 18.62 16 15 O -0.57 -21.74 13.37 -3.05 -0.04 -21.78 16 16 C -0.15 -4.10 5.56 -11.54 -0.06 -4.16 16 17 H 0.13 3.31 8.06 -2.38 -0.02 3.29 16 18 C -0.18 -4.66 6.95 -9.80 -0.07 -4.73 16 19 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 20 C 0.08 1.69 7.53 72.48 0.55 2.24 16 21 O -0.39 -8.94 11.31 -148.98 -1.69 -10.62 16 22 C 0.07 1.35 7.54 72.49 0.55 1.90 16 23 C -0.16 -3.63 6.68 -9.79 -0.07 -3.70 16 24 H 0.13 3.15 7.82 -2.39 -0.02 3.13 16 25 C -0.17 -4.56 5.36 -10.79 -0.06 -4.62 16 26 C -0.16 -4.11 10.18 30.62 0.31 -3.80 16 27 C -0.18 -4.78 9.74 30.62 0.30 -4.48 16 28 H 0.25 14.64 8.31 -92.71 -0.77 13.86 16 29 H 0.37 20.06 7.33 -92.71 -0.68 19.39 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.41 12.77 8.60 -92.71 -0.80 11.98 16 33 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.12 2.91 8.11 -2.39 -0.02 2.89 16 38 H 0.08 2.25 8.05 -2.39 -0.02 2.23 16 39 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 41 H 0.09 3.00 5.02 -2.39 -0.01 2.98 16 Total: -1.00 -66.21 338.49 0.27 -65.95 By element: Atomic # 1 Polarization: 46.97 SS G_CDS: -0.43 Total: 46.54 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 3.97 Total: -6.31 kcal Atomic # 7 Polarization: -117.62 SS G_CDS: -3.57 Total: -121.20 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -1.73 Total: -32.41 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -66.21 0.27 -65.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670507701.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.489 kcal (2) G-P(sol) polarization free energy of solvation -66.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds