Wall clock time and date at job start Tue Mar 31 2020 02:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 120.00267 * 2 1 4 4 H 1.48501 * 109.47213 * 270.00236 * 3 2 1 5 5 H 1.48497 * 109.47310 * 29.99822 * 3 2 1 6 6 H 1.48498 * 109.47534 * 149.99922 * 3 2 1 7 7 C 1.38818 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99385 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00276 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00045 * 180.02562 * 9 7 2 11 11 H 1.08991 * 109.47435 * 35.00327 * 10 9 7 12 12 C 1.53006 * 109.47247 * 155.00497 * 10 9 7 13 13 N 1.46496 * 109.46682 * 304.99737 * 12 10 9 14 14 C 1.34779 * 120.00170 * 179.97438 * 13 12 10 15 15 O 1.21284 * 119.99536 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00401 * 179.97438 * 14 13 12 17 17 C 1.52997 * 119.80997 * 248.98035 * 16 14 13 18 18 C 1.54516 * 122.36871 * 176.60024 * 16 14 13 19 19 H 1.09003 * 122.36135 * 359.44624 * 18 16 14 20 20 C 1.54474 * 104.06447 * 223.21906 * 18 16 14 21 21 O 1.44427 * 104.80148 * 336.02153 * 20 18 16 22 22 C 1.44423 * 105.27958 * 40.51323 * 21 20 18 23 23 C 1.53008 * 109.47009 * 274.99932 * 10 9 7 24 24 C 1.53000 * 117.49506 * 60.00159 * 23 10 9 25 25 C 1.53002 * 60.02940 * 107.50086 * 24 23 10 26 26 H 0.96998 * 119.99926 * 0.02562 * 1 2 3 27 27 H 0.97005 * 119.99901 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.46877 * 64.99623 * 12 10 9 29 29 H 1.08998 * 109.47270 * 184.99757 * 12 10 9 30 30 H 0.97000 * 120.00213 * 0.02562 * 13 12 10 31 31 H 1.09008 * 117.43096 * 355.36288 * 17 16 14 32 32 H 1.09000 * 117.43829 * 140.01440 * 17 16 14 33 33 H 1.08993 * 110.37764 * 217.18717 * 20 18 16 34 34 H 1.09008 * 110.46769 * 94.89638 * 20 18 16 35 35 H 1.08996 * 110.37370 * 200.66134 * 22 21 20 36 36 H 1.08999 * 110.46506 * 78.36544 * 22 21 20 37 37 H 1.08999 * 115.55053 * 274.33502 * 23 10 9 38 38 H 1.09002 * 117.49833 * 215.00191 * 24 23 10 39 39 H 1.09002 * 117.49953 * 0.02562 * 24 23 10 40 40 H 1.09000 * 117.49996 * 107.50493 * 25 24 23 41 41 H 1.08999 * 117.49664 * 252.51862 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 1 3.5645 -3.2066 -0.5890 12 6 5.4991 -2.2592 -0.6101 13 7 5.3610 -1.6644 -1.9418 14 6 6.4587 -1.3864 -2.6728 15 8 7.5607 -1.6292 -2.2282 16 6 6.3168 -0.7751 -4.0428 17 6 6.6723 -1.5974 -5.2831 18 6 7.5378 -0.3637 -4.8956 19 1 8.5625 -0.4871 -4.5451 20 6 7.1437 1.0124 -5.4763 21 8 5.6995 1.0195 -5.4608 22 6 5.3293 0.4012 -4.2092 23 6 4.2586 -2.9752 1.4372 24 6 2.9754 -3.2492 2.2240 25 6 3.8317 -4.4161 1.7280 26 1 -0.4850 0.8400 -0.0004 27 1 3.8646 -0.3622 -0.0004 28 1 6.0784 -1.5917 0.0277 29 1 6.0104 -3.2183 -0.6918 30 1 4.4797 -1.4699 -2.2971 31 1 7.0958 -2.5891 -5.1237 32 1 6.0242 -1.4986 -6.1539 33 1 7.5127 1.1135 -6.4969 34 1 7.5338 1.8157 -4.8512 35 1 4.3046 0.0326 -4.2565 36 1 5.4398 1.1085 -3.3873 37 1 5.1128 -2.5821 1.9884 38 1 2.9854 -3.0363 3.2930 39 1 2.0267 -3.0706 1.7178 40 1 4.4049 -4.9710 2.4706 41 1 3.4465 -5.0046 0.8953 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690151647.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:53 Heat of formation + Delta-G solvation = -6.242858 kcal Electronic energy + Delta-G solvation = -22426.811632 eV Core-core repulsion = 19116.185190 eV Total energy + Delta-G solvation = -3310.626442 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.85726 -38.89394 -37.61434 -34.88649 -34.34819 -33.50772 -31.31080 -29.38740 -28.22402 -25.99782 -24.25512 -22.82429 -21.82503 -21.63964 -20.90941 -20.09731 -19.33266 -17.95347 -17.30785 -16.19753 -15.74132 -15.55741 -15.37135 -15.06950 -14.83773 -14.32771 -14.12338 -13.77204 -13.36598 -13.00163 -12.92239 -12.82142 -12.48803 -12.08316 -11.67135 -11.56823 -11.44532 -10.98814 -10.92371 -10.79171 -10.70266 -10.32901 -10.29871 -9.81469 -9.77819 -9.74896 -9.53214 -9.41817 -9.06010 -8.86017 -7.41003 -5.86404 -3.23022 2.52478 3.17528 3.29494 3.33893 3.34831 3.40019 3.73038 4.27898 4.36069 4.40253 4.50080 4.68168 4.73656 5.02672 5.06276 5.25178 5.28360 5.37396 5.42871 5.48870 5.50991 5.52637 5.58902 5.62304 5.66691 5.70432 5.85845 5.89538 5.93741 6.09650 6.14176 6.42203 6.50418 6.52659 6.68304 6.70417 6.95807 7.70797 7.87379 8.31205 8.33808 9.08576 9.81191 10.00318 11.31217 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014631 B = 0.005958 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.227365 B = 4698.137982 C = 6140.383296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.010 3.990 3 Si 0.878 3.122 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.093 0.907 9 N -0.742 5.742 10 C 0.199 3.801 11 H 0.065 0.935 12 C 0.115 3.885 13 N -0.709 5.709 14 C 0.558 3.442 15 O -0.549 6.549 16 C -0.210 4.210 17 C -0.103 4.103 18 C -0.167 4.167 19 H 0.133 0.867 20 C 0.069 3.931 21 O -0.367 6.367 22 C 0.081 3.919 23 C -0.165 4.165 24 C -0.154 4.154 25 C -0.193 4.193 26 H 0.260 0.740 27 H 0.362 0.638 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.411 0.589 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.081 0.919 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.974 -3.194 -7.609 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.186 4.186 3 Si 0.708 3.292 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.372 4.372 8 H 0.110 0.890 9 N -0.384 5.384 10 C 0.089 3.911 11 H 0.083 0.917 12 C -0.009 4.009 13 N -0.360 5.360 14 C 0.343 3.657 15 O -0.427 6.427 16 C -0.213 4.213 17 C -0.140 4.140 18 C -0.186 4.186 19 H 0.150 0.850 20 C -0.008 4.008 21 O -0.286 6.286 22 C 0.004 3.996 23 C -0.186 4.186 24 C -0.191 4.191 25 C -0.231 4.231 26 H 0.070 0.930 27 H 0.195 0.805 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.248 0.752 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.124 0.876 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.129 0.871 40 H 0.100 0.900 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.324 -3.315 -7.438 15.616 hybrid contribution 0.275 1.315 0.433 1.412 sum 13.599 -2.000 -7.005 15.427 Atomic orbital electron populations 1.69682 1.05070 1.25907 1.57002 1.24636 0.95123 0.97017 1.01845 0.86666 0.79326 0.85340 0.77869 1.20959 1.21786 1.20401 1.18997 0.80263 0.94553 1.43434 0.88973 1.42837 1.04124 1.01646 1.89835 1.20023 0.89681 0.89735 0.91694 0.91726 1.21688 0.98495 0.98157 0.82540 1.45954 1.09428 1.62759 1.17894 1.18996 0.84425 0.77852 0.84453 1.90676 1.26045 1.54136 1.71858 1.23190 1.01949 1.03351 0.92839 1.23285 1.00374 0.94930 0.95383 1.24581 0.96626 0.95013 1.02340 0.84950 1.22992 0.81570 0.94141 1.02069 1.89181 1.20366 1.81151 1.37868 1.22886 0.98519 0.90909 0.87274 1.22958 0.99114 0.97159 0.99397 1.22841 0.96802 1.00334 0.99108 1.22955 1.05441 0.91271 1.03427 0.92971 0.80531 0.91763 0.91128 0.75235 0.87239 0.87369 0.88300 0.91094 0.87626 0.90837 0.89161 0.90194 0.87079 0.90031 0.89387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.57 13.97 55.49 0.78 -26.79 16 2 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 3 Si 0.88 20.98 27.73 -169.99 -4.71 16.26 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 7 C -0.24 -6.12 9.11 -15.06 -0.14 -6.26 16 8 H 0.09 2.50 7.14 -52.49 -0.37 2.13 16 9 N -0.74 -15.53 4.34 -53.42 -0.23 -15.76 16 10 C 0.20 3.43 2.70 -67.93 -0.18 3.25 16 11 H 0.06 1.15 7.84 -51.93 -0.41 0.74 16 12 C 0.12 1.80 5.22 -4.04 -0.02 1.78 16 13 N -0.71 -10.83 5.34 -60.30 -0.32 -11.16 16 14 C 0.56 8.65 7.51 -10.99 -0.08 8.56 16 15 O -0.55 -10.04 16.85 5.55 0.09 -9.94 16 16 C -0.21 -2.71 2.81 -154.09 -0.43 -3.14 16 17 C -0.10 -1.09 9.84 -25.35 -0.25 -1.34 16 18 C -0.17 -1.85 7.04 -87.67 -0.62 -2.46 16 19 H 0.13 1.45 8.14 -51.93 -0.42 1.02 16 20 C 0.07 0.71 7.54 37.93 0.29 1.00 16 21 O -0.37 -4.82 11.32 -35.23 -0.40 -5.22 16 22 C 0.08 1.07 6.97 37.94 0.26 1.33 16 23 C -0.16 -2.71 5.36 -90.58 -0.49 -3.19 16 24 C -0.15 -2.67 9.78 -26.73 -0.26 -2.93 16 25 C -0.19 -2.83 10.18 -26.69 -0.27 -3.10 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.36 7.73 5.66 -40.82 -0.23 7.50 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.41 6.27 7.90 -40.82 -0.32 5.94 16 31 H 0.11 1.10 8.14 -51.92 -0.42 0.68 16 32 H 0.11 1.06 8.07 -51.93 -0.42 0.64 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 35 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 1.43 8.11 -51.93 -0.42 1.01 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.11 2.26 6.23 -51.93 -0.32 1.93 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16 LS Contribution 338.58 15.07 5.10 5.10 Total: -1.00 -30.19 338.58 -8.30 -38.48 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -6.31 Total: 15.37 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -2.29 Total: -6.34 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.22 Total: -53.71 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.31 Total: -15.16 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.71 Total: 16.26 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.19 -8.30 -38.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690151647.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.242 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds