Wall clock time and date at job start Tue Mar 31 2020 02:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 120.00267 * 2 1 4 4 H 1.48501 * 109.47213 * 270.00236 * 3 2 1 5 5 H 1.48497 * 109.47310 * 29.99822 * 3 2 1 6 6 H 1.48498 * 109.47534 * 149.99922 * 3 2 1 7 7 C 1.38818 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99385 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00276 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00045 * 180.02562 * 9 7 2 11 11 H 1.08991 * 109.47435 * 35.00327 * 10 9 7 12 12 C 1.53006 * 109.47247 * 155.00497 * 10 9 7 13 13 N 1.46496 * 109.46682 * 304.99737 * 12 10 9 14 14 C 1.34779 * 120.00170 * 179.97438 * 13 12 10 15 15 O 1.21284 * 119.99536 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00401 * 179.97438 * 14 13 12 17 17 C 1.52997 * 119.80997 * 248.98035 * 16 14 13 18 18 C 1.54516 * 122.36871 * 176.60024 * 16 14 13 19 19 H 1.09003 * 122.36135 * 359.44624 * 18 16 14 20 20 C 1.54474 * 104.06447 * 223.21906 * 18 16 14 21 21 O 1.44427 * 104.80148 * 336.02153 * 20 18 16 22 22 C 1.44423 * 105.27958 * 40.51323 * 21 20 18 23 23 C 1.53008 * 109.47009 * 274.99932 * 10 9 7 24 24 C 1.53000 * 117.49506 * 60.00159 * 23 10 9 25 25 C 1.53002 * 60.02940 * 107.50086 * 24 23 10 26 26 H 0.96998 * 119.99926 * 0.02562 * 1 2 3 27 27 H 0.97005 * 119.99901 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.46877 * 64.99623 * 12 10 9 29 29 H 1.08998 * 109.47270 * 184.99757 * 12 10 9 30 30 H 0.97000 * 120.00213 * 0.02562 * 13 12 10 31 31 H 1.09008 * 117.43096 * 355.36288 * 17 16 14 32 32 H 1.09000 * 117.43829 * 140.01440 * 17 16 14 33 33 H 1.08993 * 110.37764 * 217.18717 * 20 18 16 34 34 H 1.09008 * 110.46769 * 94.89638 * 20 18 16 35 35 H 1.08996 * 110.37370 * 200.66134 * 22 21 20 36 36 H 1.08999 * 110.46506 * 78.36544 * 22 21 20 37 37 H 1.08999 * 115.55053 * 274.33502 * 23 10 9 38 38 H 1.09002 * 117.49833 * 215.00191 * 24 23 10 39 39 H 1.09002 * 117.49953 * 0.02562 * 24 23 10 40 40 H 1.09000 * 117.49996 * 107.50493 * 25 24 23 41 41 H 1.08999 * 117.49664 * 252.51862 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 1 3.5645 -3.2066 -0.5890 12 6 5.4991 -2.2592 -0.6101 13 7 5.3610 -1.6644 -1.9418 14 6 6.4587 -1.3864 -2.6728 15 8 7.5607 -1.6292 -2.2282 16 6 6.3168 -0.7751 -4.0428 17 6 6.6723 -1.5974 -5.2831 18 6 7.5378 -0.3637 -4.8956 19 1 8.5625 -0.4871 -4.5451 20 6 7.1437 1.0124 -5.4763 21 8 5.6995 1.0195 -5.4608 22 6 5.3293 0.4012 -4.2092 23 6 4.2586 -2.9752 1.4372 24 6 2.9754 -3.2492 2.2240 25 6 3.8317 -4.4161 1.7280 26 1 -0.4850 0.8400 -0.0004 27 1 3.8646 -0.3622 -0.0004 28 1 6.0784 -1.5917 0.0277 29 1 6.0104 -3.2183 -0.6918 30 1 4.4797 -1.4699 -2.2971 31 1 7.0958 -2.5891 -5.1237 32 1 6.0242 -1.4986 -6.1539 33 1 7.5127 1.1135 -6.4969 34 1 7.5338 1.8157 -4.8512 35 1 4.3046 0.0326 -4.2565 36 1 5.4398 1.1085 -3.3873 37 1 5.1128 -2.5821 1.9884 38 1 2.9854 -3.0363 3.2930 39 1 2.0267 -3.0706 1.7178 40 1 4.4049 -4.9710 2.4706 41 1 3.4465 -5.0046 0.8953 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690151647.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:52 Heat of formation + Delta-G solvation = -26.788900 kcal Electronic energy + Delta-G solvation = -22427.702575 eV Core-core repulsion = 19116.185190 eV Total energy + Delta-G solvation = -3311.517385 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.87053 -40.10082 -39.00301 -36.21923 -35.35995 -35.20660 -33.12391 -30.65118 -29.46130 -26.90870 -25.72146 -24.46345 -23.10459 -22.93403 -21.77255 -21.49047 -20.62155 -19.55764 -18.59905 -17.28753 -17.02332 -16.84513 -16.47474 -16.33788 -16.09275 -15.93827 -15.39731 -15.17720 -14.66453 -14.61663 -14.19712 -13.88263 -13.80492 -13.16837 -13.10453 -12.98391 -12.76797 -12.52368 -12.38847 -12.28477 -12.10834 -11.69444 -11.65630 -11.27256 -11.03853 -11.02060 -10.89435 -10.77765 -10.67123 -10.13190 -9.32442 -7.96924 -5.29519 1.38009 1.38787 1.40489 1.46889 2.04752 2.38018 2.50273 2.80420 2.98667 3.35549 3.38414 3.46502 3.62457 3.71454 3.80572 3.81135 4.08072 4.14517 4.30823 4.34000 4.36239 4.50182 4.58326 4.59741 4.63081 4.67014 4.74495 4.76515 4.77683 4.90211 5.05560 5.08760 5.16675 5.38122 5.41657 5.49900 5.59783 5.84774 6.25047 6.47154 7.10244 7.12012 7.85048 8.04071 9.24109 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014631 B = 0.005958 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.227365 B = 4698.137982 C = 6140.383296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.056 4.056 3 Si 0.938 3.062 4 H -0.275 1.275 5 H -0.306 1.306 6 H -0.262 1.262 7 C -0.206 4.206 8 H 0.066 0.934 9 N -0.741 5.741 10 C 0.200 3.800 11 H 0.060 0.940 12 C 0.125 3.875 13 N -0.709 5.709 14 C 0.559 3.441 15 O -0.578 6.578 16 C -0.229 4.229 17 C -0.088 4.088 18 C -0.156 4.156 19 H 0.135 0.865 20 C 0.066 3.934 21 O -0.381 6.381 22 C 0.083 3.917 23 C -0.170 4.170 24 C -0.176 4.176 25 C -0.161 4.161 26 H 0.254 0.746 27 H 0.363 0.637 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.411 0.589 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.064 0.936 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.462 -3.652 -8.316 17.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.247 4.247 3 Si 0.767 3.233 4 H -0.201 1.201 5 H -0.234 1.234 6 H -0.187 1.187 7 C -0.337 4.337 8 H 0.084 0.916 9 N -0.384 5.384 10 C 0.092 3.908 11 H 0.078 0.922 12 C 0.001 3.999 13 N -0.360 5.360 14 C 0.346 3.654 15 O -0.459 6.459 16 C -0.232 4.232 17 C -0.125 4.125 18 C -0.175 4.175 19 H 0.153 0.847 20 C -0.010 4.010 21 O -0.300 6.300 22 C 0.005 3.995 23 C -0.191 4.191 24 C -0.214 4.214 25 C -0.199 4.199 26 H 0.063 0.937 27 H 0.196 0.804 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.248 0.752 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.143 0.857 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.082 0.918 37 H 0.122 0.878 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.128 0.872 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 15.868 -3.805 -8.151 18.241 hybrid contribution -0.456 1.327 0.652 1.547 sum 15.413 -2.478 -7.499 17.318 Atomic orbital electron populations 1.69846 1.06907 1.26185 1.60310 1.25263 0.95715 1.00297 1.03462 0.85676 0.78389 0.81118 0.78133 1.20068 1.23396 1.18680 1.18903 0.81972 0.93145 1.39661 0.91631 1.42795 1.02625 1.03246 1.89709 1.20135 0.90208 0.87878 0.92601 0.92183 1.21568 0.96949 0.98848 0.82569 1.45975 1.09545 1.62653 1.17796 1.19344 0.83754 0.77166 0.85119 1.90657 1.26964 1.55550 1.72702 1.23124 1.03487 1.04437 0.92183 1.23399 0.99798 0.95061 0.94239 1.24703 0.96136 0.95610 1.01059 0.84720 1.23211 0.80185 0.93808 1.03813 1.89168 1.22065 1.81164 1.37565 1.22795 0.98576 0.90866 0.87219 1.22911 0.98841 0.99108 0.98288 1.22716 0.95652 1.03668 0.99351 1.23026 1.03160 0.90205 1.03490 0.93676 0.80428 0.92097 0.89680 0.75239 0.86549 0.86223 0.85704 0.90475 0.87850 0.91787 0.87843 0.89427 0.90792 0.87230 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.13 13.97 21.65 0.30 -59.83 16 2 C -0.06 -3.09 5.50 84.86 0.47 -2.62 16 3 Si 0.94 43.70 27.73 68.60 1.90 45.60 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.31 -14.99 7.11 99.48 0.71 -14.29 16 6 H -0.26 -11.31 6.52 99.48 0.65 -10.66 16 7 C -0.21 -10.51 9.11 84.04 0.77 -9.75 16 8 H 0.07 3.69 7.14 -2.91 -0.02 3.67 16 9 N -0.74 -30.50 4.34 -322.93 -1.40 -31.90 16 10 C 0.20 6.64 2.70 45.00 0.12 6.76 16 11 H 0.06 2.07 7.84 -2.39 -0.02 2.05 16 12 C 0.12 3.65 5.22 86.38 0.45 4.11 16 13 N -0.71 -20.66 5.34 -463.06 -2.47 -23.13 16 14 C 0.56 16.50 7.51 87.65 0.66 17.15 16 15 O -0.58 -20.23 16.85 -3.04 -0.05 -20.28 16 16 C -0.23 -5.52 2.81 -51.91 -0.15 -5.66 16 17 C -0.09 -1.66 9.84 31.49 0.31 -1.35 16 18 C -0.16 -3.09 7.04 -8.88 -0.06 -3.15 16 19 H 0.14 2.63 8.14 -2.39 -0.02 2.61 16 20 C 0.07 1.19 7.54 72.48 0.55 1.74 16 21 O -0.38 -9.28 11.32 -148.98 -1.69 -10.96 16 22 C 0.08 2.07 6.97 72.49 0.51 2.57 16 23 C -0.17 -5.27 5.36 -10.77 -0.06 -5.33 16 24 C -0.18 -6.01 9.78 30.60 0.30 -5.71 16 25 C -0.16 -4.30 10.18 30.62 0.31 -3.99 16 26 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 27 H 0.36 14.97 5.66 -92.70 -0.52 14.45 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.41 12.11 7.90 -92.71 -0.73 11.37 16 31 H 0.12 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.12 2.01 8.07 -2.39 -0.02 1.99 16 33 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.10 2.98 8.11 -2.39 -0.02 2.96 16 38 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 39 H 0.07 3.09 6.23 -2.39 -0.01 3.08 16 40 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.09 2.41 8.05 -2.39 -0.02 2.39 16 Total: -1.00 -65.49 338.58 0.49 -65.00 By element: Atomic # 1 Polarization: 41.00 SS G_CDS: -0.27 Total: 40.73 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 4.17 Total: -5.23 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -3.57 Total: -114.86 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -1.74 Total: -31.25 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.90 Total: 45.60 kcal Total: -65.49 0.49 -65.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690151647.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.214 kcal (2) G-P(sol) polarization free energy of solvation -65.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds