Wall clock time and date at job start Tue Mar 31 2020 02:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99605 * 2 1 4 4 H 1.48503 * 109.46845 * 239.99915 * 3 2 1 5 5 H 1.48503 * 109.47399 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47295 * 120.00011 * 3 2 1 7 7 C 1.38809 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99737 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00267 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00298 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47309 * 325.00059 * 10 9 7 12 12 C 1.53000 * 109.47255 * 204.99806 * 10 9 7 13 13 N 1.46497 * 109.46643 * 55.00336 * 12 10 9 14 14 C 1.34782 * 119.99471 * 180.02562 * 13 12 10 15 15 O 1.21276 * 120.00188 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99726 * 180.02562 * 14 13 12 17 17 C 1.53005 * 119.80398 * 248.97600 * 16 14 13 18 18 C 1.54512 * 122.36423 * 176.59967 * 16 14 13 19 19 H 1.08999 * 122.36747 * 359.43658 * 18 16 14 20 20 C 1.54487 * 104.05779 * 223.21242 * 18 16 14 21 21 O 1.44422 * 104.80275 * 336.02129 * 20 18 16 22 22 C 1.44424 * 105.27970 * 40.51328 * 21 20 18 23 23 C 1.53004 * 109.46966 * 84.99893 * 10 9 7 24 24 C 1.52995 * 117.49777 * 8.62398 * 23 10 9 25 25 C 1.52993 * 117.49853 * 300.00021 * 23 10 9 26 26 H 0.97000 * 119.99327 * 180.02562 * 1 2 3 27 27 H 0.96992 * 119.99688 * 359.97438 * 9 7 2 28 28 H 1.09001 * 109.46674 * 174.99546 * 12 10 9 29 29 H 1.08995 * 109.47319 * 294.99889 * 12 10 9 30 30 H 0.97000 * 120.00231 * 359.97438 * 13 12 10 31 31 H 1.08995 * 117.43594 * 355.36136 * 17 16 14 32 32 H 1.08991 * 117.43425 * 140.01587 * 17 16 14 33 33 H 1.08998 * 110.36874 * 217.18952 * 20 18 16 34 34 H 1.09003 * 110.46413 * 94.89755 * 20 18 16 35 35 H 1.08994 * 110.37221 * 200.65708 * 22 21 20 36 36 H 1.08992 * 110.46439 * 78.36164 * 22 21 20 37 37 H 1.09001 * 115.55124 * 154.33336 * 23 10 9 38 38 H 1.08997 * 117.49979 * 359.97438 * 24 23 10 39 39 H 1.08998 * 117.50029 * 145.02263 * 24 23 10 40 40 H 1.09001 * 117.50196 * 214.97823 * 25 23 10 41 41 H 1.09006 * 117.50287 * 0.02562 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9690 -3.5505 -0.5889 12 6 1.1811 -4.7521 -0.6090 13 7 0.7346 -4.3355 -1.9406 14 6 -0.0553 -5.1474 -2.6711 15 8 -0.3959 -6.2230 -2.2263 16 6 -0.5142 -4.7191 -4.0412 17 6 -1.9884 -4.3862 -4.2798 18 6 -1.3558 -5.6368 -4.9559 19 1 -1.6520 -6.6430 -4.6596 20 6 -0.7166 -5.4636 -6.3516 21 8 -0.0680 -4.1741 -6.3030 22 6 0.5339 -4.1000 -4.9923 23 6 2.4222 -4.0355 1.4376 24 6 1.8158 -3.1967 2.5643 25 6 3.3013 -3.0610 2.2239 26 1 -0.4849 -0.8401 0.0004 27 1 0.3558 -2.3881 0.0005 28 1 1.7562 -5.6745 -0.6908 29 1 0.3136 -4.9201 0.0291 30 1 1.0067 -3.4750 -2.2963 31 1 -2.6798 -4.5473 -3.4528 32 1 -2.2133 -3.5331 -4.9198 33 1 -1.4850 -5.4730 -7.1247 34 1 0.0156 -6.2499 -6.5357 35 1 0.7261 -3.0620 -4.7212 36 1 1.4587 -4.6762 -4.9645 37 1 2.5621 -5.1006 1.6220 38 1 1.1580 -2.3748 2.2819 39 1 1.5565 -3.7099 3.4903 40 1 4.0192 -3.4850 2.9260 41 1 3.6201 -2.1498 1.7177 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690151648.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:55 Heat of formation + Delta-G solvation = -6.281398 kcal Electronic energy + Delta-G solvation = -22442.485226 eV Core-core repulsion = 19131.857113 eV Total energy + Delta-G solvation = -3310.628113 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.81777 -38.86105 -37.67146 -34.71110 -34.29203 -33.59864 -30.94419 -29.13968 -27.84227 -25.96007 -24.08244 -23.28249 -21.95920 -21.47182 -20.85751 -19.83547 -18.98577 -17.70269 -17.38607 -16.20091 -15.70012 -15.52174 -15.47588 -14.95856 -14.75310 -14.40413 -13.89260 -13.69043 -13.50430 -13.26072 -12.92753 -12.85406 -12.18041 -11.95980 -11.63395 -11.41807 -11.34611 -10.80973 -10.68003 -10.63540 -10.44673 -10.28737 -10.04086 -9.77934 -9.73653 -9.54774 -9.28593 -9.22812 -9.02618 -8.78630 -7.17689 -6.17673 -3.20876 2.59746 3.21243 3.42890 3.46887 3.48897 3.66507 3.75210 4.32750 4.45213 4.46994 4.61567 4.72369 4.78531 5.07803 5.22512 5.23590 5.39493 5.43368 5.46898 5.51913 5.55736 5.63799 5.65454 5.69062 5.73329 5.84102 5.93172 5.94217 5.98675 6.29471 6.30450 6.50446 6.53478 6.61104 6.76294 6.92262 7.13975 7.72853 7.77807 8.40198 8.66014 9.09635 9.96345 10.10945 11.28994 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016066 B = 0.005159 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.342475 B = 5426.173605 C = 6593.802190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.039 4.039 3 Si 1.075 2.925 4 H -0.296 1.296 5 H -0.286 1.286 6 H -0.295 1.295 7 C -0.331 4.331 8 H 0.066 0.934 9 N -0.728 5.728 10 C 0.198 3.802 11 H 0.058 0.942 12 C 0.117 3.883 13 N -0.706 5.706 14 C 0.558 3.442 15 O -0.551 6.551 16 C -0.208 4.208 17 C -0.101 4.101 18 C -0.169 4.169 19 H 0.132 0.868 20 C 0.070 3.930 21 O -0.368 6.368 22 C 0.083 3.917 23 C -0.179 4.179 24 C -0.162 4.162 25 C -0.172 4.172 26 H 0.255 0.745 27 H 0.369 0.631 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.411 0.589 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.114 0.886 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.783 -9.948 -7.644 12.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.237 4.237 3 Si 0.906 3.094 4 H -0.223 1.223 5 H -0.211 1.211 6 H -0.223 1.223 7 C -0.462 4.462 8 H 0.084 0.916 9 N -0.371 5.371 10 C 0.087 3.913 11 H 0.076 0.924 12 C -0.007 4.007 13 N -0.357 5.357 14 C 0.343 3.657 15 O -0.429 6.429 16 C -0.212 4.212 17 C -0.138 4.138 18 C -0.187 4.187 19 H 0.150 0.850 20 C -0.007 4.007 21 O -0.286 6.286 22 C 0.006 3.994 23 C -0.201 4.201 24 C -0.199 4.199 25 C -0.209 4.209 26 H 0.067 0.933 27 H 0.203 0.797 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.247 0.753 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.123 0.877 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.132 0.868 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.656 -8.844 -7.499 11.613 hybrid contribution 0.189 -1.540 0.346 1.589 sum 0.845 -10.383 -7.153 12.637 Atomic orbital electron populations 1.70901 1.06043 1.28489 1.52958 1.25669 0.96954 1.00815 1.00266 0.83309 0.74319 0.75941 0.75871 1.22300 1.21125 1.22273 1.19947 0.91883 0.85414 1.48956 0.91618 1.42467 1.04823 1.00457 1.89334 1.19922 0.93996 0.85532 0.91848 0.92373 1.21633 0.98810 0.97620 0.82630 1.45928 1.50256 1.21699 1.17807 1.18995 0.78132 0.83961 0.84629 1.90669 1.57319 1.22717 1.72236 1.23158 0.94976 1.07762 0.95280 1.23293 0.90974 0.97871 1.01659 1.24579 1.03270 0.97494 0.93406 0.85008 1.22982 0.95869 0.86227 0.95592 1.89177 1.71561 1.35260 1.32625 1.22844 0.93619 1.02384 0.80554 1.23055 1.06209 0.95382 0.95421 1.22849 0.96905 1.03302 0.96877 1.22845 0.93343 1.01866 1.02863 0.93320 0.79729 0.91679 0.91726 0.75284 0.87176 0.87321 0.88318 0.91163 0.87748 0.91041 0.89569 0.86828 0.91196 0.90926 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.03 13.70 55.49 0.76 -26.27 16 2 C -0.04 -1.03 5.50 -17.43 -0.10 -1.12 16 3 Si 1.07 24.50 29.92 -169.99 -5.09 19.42 16 4 H -0.30 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.30 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.33 -8.20 8.15 -15.06 -0.12 -8.32 16 8 H 0.07 1.63 6.91 -52.48 -0.36 1.27 16 9 N -0.73 -15.81 3.08 -53.42 -0.16 -15.97 16 10 C 0.20 3.58 2.86 -67.93 -0.19 3.39 16 11 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 12 C 0.12 1.95 5.21 -4.04 -0.02 1.93 16 13 N -0.71 -11.43 5.34 -60.30 -0.32 -11.75 16 14 C 0.56 9.13 7.51 -10.98 -0.08 9.05 16 15 O -0.55 -10.57 16.85 5.56 0.09 -10.48 16 16 C -0.21 -2.84 2.81 -154.09 -0.43 -3.27 16 17 C -0.10 -1.24 9.84 -25.34 -0.25 -1.49 16 18 C -0.17 -1.96 7.04 -87.66 -0.62 -2.58 16 19 H 0.13 1.52 8.14 -51.93 -0.42 1.09 16 20 C 0.07 0.72 7.55 37.94 0.29 1.00 16 21 O -0.37 -4.71 11.32 -35.23 -0.40 -5.11 16 22 C 0.08 1.04 6.97 37.93 0.26 1.31 16 23 C -0.18 -3.10 5.71 -90.62 -0.52 -3.61 16 24 C -0.16 -3.02 9.74 -26.73 -0.26 -3.28 16 25 C -0.17 -3.07 9.86 -26.74 -0.26 -3.33 16 26 H 0.26 7.27 6.77 -40.82 -0.28 6.99 16 27 H 0.37 8.62 6.63 -40.82 -0.27 8.35 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.41 6.74 7.90 -40.82 -0.32 6.42 16 31 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.11 1.27 8.07 -51.93 -0.42 0.85 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 38 H 0.11 2.53 6.68 -51.93 -0.35 2.18 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.10 2.09 6.23 -51.93 -0.32 1.76 16 LS Contribution 337.08 15.07 5.08 5.08 Total: -1.00 -29.33 337.08 -8.53 -37.86 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -6.19 Total: 17.58 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -2.31 Total: -10.34 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.27 Total: -54.00 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.31 Total: -15.59 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -5.09 Total: 19.42 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.33 -8.53 -37.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690151648.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.575 kcal (2) G-P(sol) polarization free energy of solvation -29.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds