Wall clock time and date at job start Tue Mar 31 2020 02:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99605 * 2 1 4 4 H 1.48503 * 109.46845 * 239.99915 * 3 2 1 5 5 H 1.48503 * 109.47399 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47295 * 120.00011 * 3 2 1 7 7 C 1.38809 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99737 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00267 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00298 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47309 * 325.00059 * 10 9 7 12 12 C 1.53000 * 109.47255 * 204.99806 * 10 9 7 13 13 N 1.46497 * 109.46643 * 55.00336 * 12 10 9 14 14 C 1.34782 * 119.99471 * 180.02562 * 13 12 10 15 15 O 1.21276 * 120.00188 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99726 * 180.02562 * 14 13 12 17 17 C 1.53005 * 119.80398 * 248.97600 * 16 14 13 18 18 C 1.54512 * 122.36423 * 176.59967 * 16 14 13 19 19 H 1.08999 * 122.36747 * 359.43658 * 18 16 14 20 20 C 1.54487 * 104.05779 * 223.21242 * 18 16 14 21 21 O 1.44422 * 104.80275 * 336.02129 * 20 18 16 22 22 C 1.44424 * 105.27970 * 40.51328 * 21 20 18 23 23 C 1.53004 * 109.46966 * 84.99893 * 10 9 7 24 24 C 1.52995 * 117.49777 * 8.62398 * 23 10 9 25 25 C 1.52993 * 117.49853 * 300.00021 * 23 10 9 26 26 H 0.97000 * 119.99327 * 180.02562 * 1 2 3 27 27 H 0.96992 * 119.99688 * 359.97438 * 9 7 2 28 28 H 1.09001 * 109.46674 * 174.99546 * 12 10 9 29 29 H 1.08995 * 109.47319 * 294.99889 * 12 10 9 30 30 H 0.97000 * 120.00231 * 359.97438 * 13 12 10 31 31 H 1.08995 * 117.43594 * 355.36136 * 17 16 14 32 32 H 1.08991 * 117.43425 * 140.01587 * 17 16 14 33 33 H 1.08998 * 110.36874 * 217.18952 * 20 18 16 34 34 H 1.09003 * 110.46413 * 94.89755 * 20 18 16 35 35 H 1.08994 * 110.37221 * 200.65708 * 22 21 20 36 36 H 1.08992 * 110.46439 * 78.36164 * 22 21 20 37 37 H 1.09001 * 115.55124 * 154.33336 * 23 10 9 38 38 H 1.08997 * 117.49979 * 359.97438 * 24 23 10 39 39 H 1.08998 * 117.50029 * 145.02263 * 24 23 10 40 40 H 1.09001 * 117.50196 * 214.97823 * 25 23 10 41 41 H 1.09006 * 117.50287 * 0.02562 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9690 -3.5505 -0.5889 12 6 1.1811 -4.7521 -0.6090 13 7 0.7346 -4.3355 -1.9406 14 6 -0.0553 -5.1474 -2.6711 15 8 -0.3959 -6.2230 -2.2263 16 6 -0.5142 -4.7191 -4.0412 17 6 -1.9884 -4.3862 -4.2798 18 6 -1.3558 -5.6368 -4.9559 19 1 -1.6520 -6.6430 -4.6596 20 6 -0.7166 -5.4636 -6.3516 21 8 -0.0680 -4.1741 -6.3030 22 6 0.5339 -4.1000 -4.9923 23 6 2.4222 -4.0355 1.4376 24 6 1.8158 -3.1967 2.5643 25 6 3.3013 -3.0610 2.2239 26 1 -0.4849 -0.8401 0.0004 27 1 0.3558 -2.3881 0.0005 28 1 1.7562 -5.6745 -0.6908 29 1 0.3136 -4.9201 0.0291 30 1 1.0067 -3.4750 -2.2963 31 1 -2.6798 -4.5473 -3.4528 32 1 -2.2133 -3.5331 -4.9198 33 1 -1.4850 -5.4730 -7.1247 34 1 0.0156 -6.2499 -6.5357 35 1 0.7261 -3.0620 -4.7212 36 1 1.4587 -4.6762 -4.9645 37 1 2.5621 -5.1006 1.6220 38 1 1.1580 -2.3748 2.2819 39 1 1.5565 -3.7099 3.4903 40 1 4.0192 -3.4850 2.9260 41 1 3.6201 -2.1498 1.7177 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690151648.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:55 Heat of formation + Delta-G solvation = -25.103090 kcal Electronic energy + Delta-G solvation = -22443.301396 eV Core-core repulsion = 19131.857113 eV Total energy + Delta-G solvation = -3311.444283 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.88613 -40.14801 -39.15146 -36.09136 -35.43334 -35.31073 -32.59996 -30.33590 -29.26452 -26.91675 -25.67125 -24.96198 -23.32475 -22.87469 -21.78809 -21.21574 -20.33996 -19.39739 -18.72182 -17.36138 -16.91104 -16.82100 -16.68961 -16.34053 -16.06467 -15.76683 -15.60579 -15.32076 -14.87196 -14.65502 -13.93046 -13.88367 -13.61381 -13.13548 -12.98056 -12.86266 -12.58638 -12.54019 -12.24626 -12.13164 -11.87990 -11.69050 -11.30128 -11.25719 -11.05184 -10.98228 -10.81175 -10.72577 -10.66798 -10.15758 -9.08922 -8.26484 -5.23066 1.35582 1.61821 1.69156 1.84657 2.00795 2.37912 2.73471 2.79705 3.04657 3.35248 3.45822 3.50003 3.66616 3.71613 3.78599 3.86479 4.05781 4.18780 4.23150 4.35994 4.39021 4.48801 4.53443 4.59261 4.60461 4.66208 4.70953 4.76521 4.80458 4.89247 5.01440 5.08738 5.14193 5.33639 5.44751 5.56923 5.60435 5.74732 6.44198 6.58628 7.07870 7.14327 8.03945 8.16503 9.23598 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016066 B = 0.005159 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.342475 B = 5426.173605 C = 6593.802190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.097 4.097 3 Si 1.115 2.885 4 H -0.279 1.279 5 H -0.301 1.301 6 H -0.284 1.284 7 C -0.306 4.306 8 H 0.068 0.932 9 N -0.731 5.731 10 C 0.198 3.802 11 H 0.059 0.941 12 C 0.127 3.873 13 N -0.705 5.705 14 C 0.558 3.442 15 O -0.581 6.581 16 C -0.228 4.228 17 C -0.103 4.103 18 C -0.151 4.151 19 H 0.135 0.865 20 C 0.069 3.931 21 O -0.381 6.381 22 C 0.088 3.912 23 C -0.170 4.170 24 C -0.172 4.172 25 C -0.167 4.167 26 H 0.244 0.756 27 H 0.359 0.641 28 H 0.082 0.918 29 H 0.052 0.948 30 H 0.410 0.590 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.117 0.883 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.046 -11.214 -8.323 14.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.289 4.289 3 Si 0.943 3.057 4 H -0.205 1.205 5 H -0.228 1.228 6 H -0.211 1.211 7 C -0.438 4.438 8 H 0.086 0.914 9 N -0.372 5.372 10 C 0.089 3.911 11 H 0.077 0.923 12 C 0.002 3.998 13 N -0.355 5.355 14 C 0.345 3.655 15 O -0.462 6.462 16 C -0.231 4.231 17 C -0.140 4.140 18 C -0.170 4.170 19 H 0.152 0.848 20 C -0.007 4.007 21 O -0.300 6.300 22 C 0.011 3.989 23 C -0.191 4.191 24 C -0.210 4.210 25 C -0.204 4.204 26 H 0.054 0.946 27 H 0.192 0.808 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.246 0.754 31 H 0.123 0.877 32 H 0.134 0.866 33 H 0.141 0.859 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.134 0.866 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.963 -10.145 -8.184 13.181 hybrid contribution -0.184 -1.246 0.574 1.384 sum 1.780 -11.391 -7.610 13.814 Atomic orbital electron populations 1.70997 1.07196 1.27822 1.56516 1.26727 0.96956 1.03889 1.01331 0.82750 0.73425 0.72680 0.76868 1.20513 1.22803 1.21071 1.20141 0.91942 0.86245 1.45437 0.91437 1.42513 1.04377 1.01105 1.89251 1.20054 0.93815 0.84413 0.92818 0.92278 1.21511 0.98124 0.97533 0.82601 1.45929 1.50285 1.21616 1.17639 1.19396 0.77351 0.83339 0.85428 1.90645 1.58392 1.23959 1.73216 1.23160 0.95870 1.09809 0.94299 1.23340 0.89964 0.98852 1.01836 1.24709 1.01422 0.97119 0.93720 0.84753 1.23211 0.96643 0.85639 0.95173 1.89166 1.71813 1.36670 1.32345 1.22787 0.93535 1.02174 0.80377 1.23056 1.05191 0.96837 0.93983 1.22718 0.96910 1.02859 0.98475 1.22830 0.93288 1.01111 1.03210 0.94569 0.80830 0.89985 0.93005 0.75394 0.87691 0.86608 0.85905 0.89608 0.88225 0.90277 0.86552 0.90956 0.88968 0.87877 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -57.77 13.70 21.65 0.30 -57.47 16 2 C -0.10 -5.22 5.50 84.86 0.47 -4.75 16 3 Si 1.12 49.76 29.92 68.60 2.05 51.81 16 4 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.31 -15.19 8.15 84.03 0.68 -14.51 16 8 H 0.07 3.31 6.91 -2.91 -0.02 3.29 16 9 N -0.73 -31.98 3.08 -322.94 -0.99 -32.97 16 10 C 0.20 6.98 2.86 44.99 0.13 7.11 16 11 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 12 C 0.13 4.09 5.21 86.38 0.45 4.54 16 13 N -0.70 -22.58 5.34 -463.07 -2.47 -25.05 16 14 C 0.56 18.04 7.51 87.66 0.66 18.69 16 15 O -0.58 -22.04 16.85 -3.02 -0.05 -22.09 16 16 C -0.23 -6.03 2.81 -51.91 -0.15 -6.18 16 17 C -0.10 -2.46 9.84 31.49 0.31 -2.15 16 18 C -0.15 -3.27 7.04 -8.88 -0.06 -3.33 16 19 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 20 C 0.07 1.24 7.55 72.49 0.55 1.79 16 21 O -0.38 -9.06 11.32 -148.98 -1.69 -10.75 16 22 C 0.09 2.12 6.97 72.48 0.51 2.62 16 23 C -0.17 -5.50 5.71 -10.80 -0.06 -5.57 16 24 C -0.17 -6.23 9.74 30.59 0.30 -5.94 16 25 C -0.17 -5.62 9.86 30.59 0.30 -5.32 16 26 H 0.24 14.42 6.77 -92.71 -0.63 13.79 16 27 H 0.36 17.27 6.63 -92.71 -0.61 16.66 16 28 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.41 13.43 7.90 -92.71 -0.73 12.70 16 31 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.12 2.59 8.07 -2.39 -0.02 2.57 16 33 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.12 3.16 8.11 -2.39 -0.02 3.14 16 38 H 0.07 3.27 6.68 -2.39 -0.02 3.26 16 39 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 40 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 41 H 0.08 3.05 6.23 -2.38 -0.01 3.04 16 Total: -1.00 -63.26 337.08 1.07 -62.19 By element: Atomic # 1 Polarization: 47.48 SS G_CDS: -0.16 Total: 47.32 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 4.08 Total: -12.99 kcal Atomic # 7 Polarization: -112.32 SS G_CDS: -3.17 Total: -115.49 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -1.74 Total: -32.84 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 2.05 Total: 51.81 kcal Total: -63.26 1.07 -62.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690151648.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.089 kcal (2) G-P(sol) polarization free energy of solvation -63.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds