Wall clock time and date at job start Tue Mar 31 2020 02:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47074 * 272.02025 * 3 2 1 5 5 H 1.48506 * 109.46926 * 32.01828 * 3 2 1 6 6 H 1.48497 * 109.47354 * 152.01904 * 3 2 1 7 7 C 1.38816 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00208 * 336.83518 * 7 2 1 9 9 N 1.36940 * 119.99593 * 156.83091 * 7 2 1 10 10 C 1.46497 * 120.00055 * 320.88874 * 9 7 2 11 11 C 1.53007 * 109.47024 * 269.99738 * 10 9 7 12 12 N 1.46497 * 109.47024 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99760 * 180.02562 * 12 11 10 14 14 O 1.21275 * 120.00062 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99475 * 180.02562 * 13 12 11 16 16 C 1.52997 * 119.80491 * 250.97811 * 15 13 12 17 17 C 1.52997 * 60.65832 * 247.69526 * 16 15 13 18 18 H 1.09002 * 120.25019 * 112.13157 * 17 16 15 19 19 C 1.54482 * 118.06389 * 269.59839 * 17 16 15 20 20 O 1.44426 * 104.80261 * 86.82429 * 19 17 16 21 21 C 1.43865 * 105.56941 * 319.93938 * 20 19 17 22 22 C 1.46501 * 119.99729 * 140.88651 * 9 7 2 23 23 C 1.53001 * 117.49855 * 4.01648 * 22 9 7 24 24 C 1.52995 * 117.50109 * 295.39510 * 22 9 7 25 25 H 0.96994 * 119.99733 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46723 * 150.00106 * 10 9 7 27 27 H 1.08995 * 109.47436 * 30.00164 * 10 9 7 28 28 H 1.08995 * 109.46597 * 60.00377 * 11 10 9 29 29 H 1.09003 * 109.47083 * 300.00304 * 11 10 9 30 30 H 0.97001 * 120.00563 * 0.02562 * 12 11 10 31 31 H 1.08999 * 117.43393 * 355.37490 * 16 15 13 32 32 H 1.09004 * 117.43383 * 140.01630 * 16 15 13 33 33 H 1.09001 * 110.36587 * 205.65549 * 19 17 16 34 34 H 1.08998 * 110.36946 * 327.98951 * 19 17 16 35 35 H 1.08999 * 109.55727 * 281.17411 * 21 20 19 36 36 H 1.08997 * 110.91946 * 159.02116 * 21 20 19 37 37 H 1.09006 * 115.54796 * 149.72321 * 22 9 7 38 38 H 1.08996 * 117.49697 * 359.97438 * 23 22 9 39 39 H 1.09001 * 117.49736 * 145.01796 * 23 22 9 40 40 H 1.08999 * 117.49949 * 214.98322 * 24 22 9 41 41 H 1.09007 * 117.49743 * 359.97312 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4550 2.0710 -1.3992 5 1 1.4697 2.6400 0.7423 6 1 3.5685 1.4282 0.6569 7 6 2.0102 -1.2022 0.0005 8 1 1.5356 -2.0996 0.3688 9 7 3.2968 -1.2502 -0.4661 10 6 3.6779 -0.4691 -1.6454 11 6 3.4610 -1.3095 -2.9055 12 7 3.8427 -0.5287 -4.0848 13 6 3.7347 -1.0692 -5.3148 14 8 3.3213 -2.2018 -5.4452 15 6 4.1279 -0.2661 -6.5279 16 6 3.0485 0.2441 -7.4847 17 6 4.0264 -0.8313 -7.9624 18 1 3.6738 -1.8420 -8.1677 19 6 5.3368 -0.3727 -8.6400 20 8 6.2622 -0.1649 -7.5508 21 6 5.4939 0.4548 -6.5042 22 6 4.2921 -2.0826 0.2142 23 6 3.8113 -2.9465 1.3819 24 6 4.6660 -1.7061 1.6492 25 1 -0.4849 0.8400 -0.0004 26 1 4.7288 -0.1893 -1.5717 27 1 3.0651 0.4307 -1.6988 28 1 2.4102 -1.5893 -2.9791 29 1 4.0738 -2.2094 -2.8521 30 1 4.1730 0.3774 -3.9806 31 1 2.0205 -0.0622 -7.2913 32 1 3.1702 1.2489 -7.8892 33 1 5.7081 -1.1473 -9.3109 34 1 5.1767 0.5577 -9.1848 35 1 5.3673 1.5150 -6.7233 36 1 5.9766 0.3216 -5.5360 37 1 5.0796 -2.4878 -0.4213 38 1 2.7546 -2.8953 1.6441 39 1 4.2824 -3.9205 1.5146 40 1 5.6994 -1.8639 1.9579 41 1 4.1718 -0.8387 2.0870 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691211030.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:18 Heat of formation + Delta-G solvation = 9.305191 kcal Electronic energy + Delta-G solvation = -22153.401126 eV Core-core repulsion = 18843.448898 eV Total energy + Delta-G solvation = -3309.952228 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.96383 -38.72426 -37.35978 -35.13907 -34.67974 -33.26190 -31.44814 -29.40388 -27.78281 -25.67591 -24.50216 -23.41013 -22.02946 -21.44432 -21.22595 -19.85149 -19.51248 -17.71025 -16.48347 -16.11448 -15.77136 -15.73040 -15.56606 -15.14311 -14.78699 -14.67169 -14.13134 -13.79778 -13.34853 -13.22498 -12.86761 -12.56895 -12.29575 -12.14913 -11.90219 -11.68977 -11.51117 -10.94570 -10.92830 -10.78471 -10.51445 -10.45238 -10.10957 -10.02398 -9.91001 -9.60747 -9.55285 -9.45047 -8.76100 -8.57010 -6.84524 -6.12034 -3.55985 2.56734 3.12443 3.17312 3.34391 3.37048 3.42798 3.73131 4.12809 4.24196 4.39514 4.57666 4.71950 4.74887 4.79103 4.91408 5.03477 5.17227 5.33896 5.35622 5.37517 5.44292 5.60656 5.70344 5.74107 5.76316 5.85363 5.95247 6.03140 6.13306 6.39534 6.41121 6.41619 6.55543 6.63632 6.79346 6.89582 7.07970 7.70563 7.93498 8.30879 8.39880 8.86172 9.57450 9.96586 11.02491 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020739 B = 0.004403 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.809750 B = 6358.110829 C = 6838.017841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.042 3.958 3 Si 0.873 3.127 4 H -0.284 1.284 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.275 4.275 8 H 0.084 0.916 9 N -0.567 5.567 10 C 0.129 3.871 11 C 0.100 3.900 12 N -0.719 5.719 13 C 0.556 3.444 14 O -0.538 6.538 15 C -0.211 4.211 16 C -0.107 4.107 17 C -0.160 4.160 18 H 0.132 0.868 19 C 0.073 3.927 20 O -0.369 6.369 21 C 0.087 3.913 22 C 0.117 3.883 23 C -0.187 4.187 24 C -0.222 4.222 25 H 0.265 0.735 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.396 0.604 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.425 3.117 -13.383 17.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.160 4.160 3 Si 0.702 3.298 4 H -0.212 1.212 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.403 4.403 8 H 0.102 0.898 9 N -0.286 5.286 10 C 0.002 3.998 11 C -0.025 4.025 12 N -0.369 5.369 13 C 0.341 3.659 14 O -0.415 6.415 15 C -0.214 4.214 16 C -0.144 4.144 17 C -0.179 4.179 18 H 0.150 0.850 19 C -0.003 4.003 20 O -0.288 6.288 21 C 0.010 3.990 22 C 0.009 3.991 23 C -0.225 4.225 24 C -0.262 4.262 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.230 0.770 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.122 0.878 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.170 2.320 -13.417 16.995 hybrid contribution 0.203 1.430 0.284 1.472 sum 10.373 3.750 -13.132 17.150 Atomic orbital electron populations 1.69876 1.06034 1.26951 1.50148 1.25520 0.95056 0.97782 0.97637 0.87042 0.80896 0.84671 0.77145 1.21234 1.22692 1.19043 1.18740 0.86287 0.94677 1.40618 0.89818 1.43506 1.07344 1.52165 1.25566 1.21374 0.98252 0.94497 0.85637 1.22289 1.01675 0.95089 0.83410 1.46008 1.66407 1.18260 1.06215 1.18975 0.77769 0.86087 0.83068 1.90706 1.46193 1.18495 1.86102 1.23388 0.99985 1.05997 0.92053 1.23154 0.95479 0.98670 0.97076 1.24336 0.99072 1.01224 0.93293 0.85015 1.22987 0.86742 1.00839 0.89762 1.89076 1.33109 1.81355 1.25212 1.22729 0.87655 0.95662 0.92968 1.21194 0.93958 0.97272 0.86678 1.23066 1.01166 0.93506 1.04747 1.23365 0.98422 0.99640 1.04804 0.92503 0.93468 0.91883 0.90466 0.92068 0.77030 0.87038 0.87646 0.88168 0.91565 0.91241 0.88139 0.88955 0.87828 0.90380 0.90748 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.97 55.49 0.78 -25.47 16 2 C 0.04 1.15 5.28 -17.43 -0.09 1.06 16 3 Si 0.87 20.97 25.32 -169.99 -4.30 16.67 16 4 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 5 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.27 -7.33 8.93 -15.06 -0.13 -7.47 16 8 H 0.08 2.44 6.85 -52.49 -0.36 2.08 16 9 N -0.57 -12.86 2.38 -165.66 -0.39 -13.25 16 10 C 0.13 2.58 4.68 -4.04 -0.02 2.56 16 11 C 0.10 1.91 6.00 -4.04 -0.02 1.89 16 12 N -0.72 -11.34 5.45 -60.29 -0.33 -11.67 16 13 C 0.56 9.11 7.42 -10.98 -0.08 9.03 16 14 O -0.54 -11.00 16.85 5.56 0.09 -10.91 16 15 C -0.21 -2.57 2.84 -154.09 -0.44 -3.01 16 16 C -0.11 -1.04 9.89 -26.73 -0.26 -1.31 16 17 C -0.16 -1.71 6.90 -89.05 -0.61 -2.32 16 18 H 0.13 1.51 8.14 -51.93 -0.42 1.08 16 19 C 0.07 0.66 7.45 37.94 0.28 0.95 16 20 O -0.37 -4.37 11.62 -35.23 -0.41 -4.78 16 21 C 0.09 0.91 7.09 37.93 0.27 1.18 16 22 C 0.12 2.31 6.57 -67.93 -0.45 1.87 16 23 C -0.19 -3.52 9.80 -26.73 -0.26 -3.78 16 24 C -0.22 -4.14 10.34 -26.74 -0.28 -4.41 16 25 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.05 0.82 8.07 -51.93 -0.42 0.41 16 27 H 0.06 1.37 3.45 -51.93 -0.18 1.19 16 28 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.40 5.12 8.28 -40.82 -0.34 4.78 16 31 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 1.01 7.88 -51.93 -0.41 0.60 16 37 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.10 2.20 6.44 -51.93 -0.33 1.87 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 LS Contribution 336.49 15.07 5.07 5.07 Total: -1.00 -32.20 336.49 -7.88 -40.08 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -6.28 Total: 8.04 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -2.10 Total: -3.77 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 0.05 Total: -50.39 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.32 Total: -15.69 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.30 Total: 16.67 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.20 -7.88 -40.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691211030.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.381 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds