Wall clock time and date at job start Tue Mar 31 2020 02:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47074 * 272.02025 * 3 2 1 5 5 H 1.48506 * 109.46926 * 32.01828 * 3 2 1 6 6 H 1.48497 * 109.47354 * 152.01904 * 3 2 1 7 7 C 1.38816 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00208 * 336.83518 * 7 2 1 9 9 N 1.36940 * 119.99593 * 156.83091 * 7 2 1 10 10 C 1.46497 * 120.00055 * 320.88874 * 9 7 2 11 11 C 1.53007 * 109.47024 * 269.99738 * 10 9 7 12 12 N 1.46497 * 109.47024 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99760 * 180.02562 * 12 11 10 14 14 O 1.21275 * 120.00062 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99475 * 180.02562 * 13 12 11 16 16 C 1.52997 * 119.80491 * 250.97811 * 15 13 12 17 17 C 1.52997 * 60.65832 * 247.69526 * 16 15 13 18 18 H 1.09002 * 120.25019 * 112.13157 * 17 16 15 19 19 C 1.54482 * 118.06389 * 269.59839 * 17 16 15 20 20 O 1.44426 * 104.80261 * 86.82429 * 19 17 16 21 21 C 1.43865 * 105.56941 * 319.93938 * 20 19 17 22 22 C 1.46501 * 119.99729 * 140.88651 * 9 7 2 23 23 C 1.53001 * 117.49855 * 4.01648 * 22 9 7 24 24 C 1.52995 * 117.50109 * 295.39510 * 22 9 7 25 25 H 0.96994 * 119.99733 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46723 * 150.00106 * 10 9 7 27 27 H 1.08995 * 109.47436 * 30.00164 * 10 9 7 28 28 H 1.08995 * 109.46597 * 60.00377 * 11 10 9 29 29 H 1.09003 * 109.47083 * 300.00304 * 11 10 9 30 30 H 0.97001 * 120.00563 * 0.02562 * 12 11 10 31 31 H 1.08999 * 117.43393 * 355.37490 * 16 15 13 32 32 H 1.09004 * 117.43383 * 140.01630 * 16 15 13 33 33 H 1.09001 * 110.36587 * 205.65549 * 19 17 16 34 34 H 1.08998 * 110.36946 * 327.98951 * 19 17 16 35 35 H 1.08999 * 109.55727 * 281.17411 * 21 20 19 36 36 H 1.08997 * 110.91946 * 159.02116 * 21 20 19 37 37 H 1.09006 * 115.54796 * 149.72321 * 22 9 7 38 38 H 1.08996 * 117.49697 * 359.97438 * 23 22 9 39 39 H 1.09001 * 117.49736 * 145.01796 * 23 22 9 40 40 H 1.08999 * 117.49949 * 214.98322 * 24 22 9 41 41 H 1.09007 * 117.49743 * 359.97312 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4550 2.0710 -1.3992 5 1 1.4697 2.6400 0.7423 6 1 3.5685 1.4282 0.6569 7 6 2.0102 -1.2022 0.0005 8 1 1.5356 -2.0996 0.3688 9 7 3.2968 -1.2502 -0.4661 10 6 3.6779 -0.4691 -1.6454 11 6 3.4610 -1.3095 -2.9055 12 7 3.8427 -0.5287 -4.0848 13 6 3.7347 -1.0692 -5.3148 14 8 3.3213 -2.2018 -5.4452 15 6 4.1279 -0.2661 -6.5279 16 6 3.0485 0.2441 -7.4847 17 6 4.0264 -0.8313 -7.9624 18 1 3.6738 -1.8420 -8.1677 19 6 5.3368 -0.3727 -8.6400 20 8 6.2622 -0.1649 -7.5508 21 6 5.4939 0.4548 -6.5042 22 6 4.2921 -2.0826 0.2142 23 6 3.8113 -2.9465 1.3819 24 6 4.6660 -1.7061 1.6492 25 1 -0.4849 0.8400 -0.0004 26 1 4.7288 -0.1893 -1.5717 27 1 3.0651 0.4307 -1.6988 28 1 2.4102 -1.5893 -2.9791 29 1 4.0738 -2.2094 -2.8521 30 1 4.1730 0.3774 -3.9806 31 1 2.0205 -0.0622 -7.2913 32 1 3.1702 1.2489 -7.8892 33 1 5.7081 -1.1473 -9.3109 34 1 5.1767 0.5577 -9.1848 35 1 5.3673 1.5150 -6.7233 36 1 5.9766 0.3216 -5.5360 37 1 5.0796 -2.4878 -0.4213 38 1 2.7546 -2.8953 1.6441 39 1 4.2824 -3.9205 1.5146 40 1 5.6994 -1.8639 1.9579 41 1 4.1718 -0.8387 2.0870 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691211030.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:17 Heat of formation + Delta-G solvation = -13.857817 kcal Electronic energy + Delta-G solvation = -22154.405550 eV Core-core repulsion = 18843.448898 eV Total energy + Delta-G solvation = -3310.956651 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.91127 -39.96918 -38.99576 -36.51845 -35.65924 -35.01470 -33.34032 -30.47191 -29.16765 -26.51076 -26.25752 -24.78535 -23.42231 -22.91895 -22.09046 -21.49834 -20.81721 -18.84025 -18.17321 -17.53141 -17.39193 -16.95848 -16.61443 -16.41221 -16.08663 -15.76539 -15.47985 -15.19817 -14.85422 -14.41284 -14.26545 -14.09862 -13.68119 -13.59114 -13.36331 -13.01292 -12.71648 -12.54600 -12.27036 -12.11949 -11.86761 -11.81260 -11.76713 -11.36216 -11.33580 -11.05421 -10.92439 -10.63755 -10.57776 -10.17780 -8.70186 -8.23835 -5.65590 1.25629 1.38214 1.41333 1.52721 1.95076 2.34897 2.38684 2.95046 3.01055 3.19789 3.31587 3.34424 3.39961 3.68858 3.93992 3.98721 4.08720 4.14591 4.26110 4.34808 4.37367 4.45861 4.53559 4.61938 4.64701 4.66702 4.77425 4.86284 4.88373 4.93729 5.00679 5.05162 5.07937 5.27549 5.36840 5.52957 5.69538 5.90869 6.18302 6.45690 6.93485 7.13575 7.56627 7.96698 8.95167 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020739 B = 0.004403 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.809750 B = 6358.110829 C = 6838.017841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.016 4.016 3 Si 0.939 3.061 4 H -0.258 1.258 5 H -0.310 1.310 6 H -0.255 1.255 7 C -0.263 4.263 8 H 0.041 0.959 9 N -0.581 5.581 10 C 0.130 3.870 11 C 0.118 3.882 12 N -0.708 5.708 13 C 0.551 3.449 14 O -0.589 6.589 15 C -0.228 4.228 16 C -0.088 4.088 17 C -0.162 4.162 18 H 0.114 0.886 19 C 0.075 3.925 20 O -0.392 6.392 21 C 0.091 3.909 22 C 0.101 3.899 23 C -0.190 4.190 24 C -0.204 4.204 25 H 0.264 0.736 26 H 0.086 0.914 27 H 0.049 0.951 28 H 0.031 0.969 29 H 0.059 0.941 30 H 0.414 0.586 31 H 0.099 0.901 32 H 0.142 0.858 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.125 0.875 38 H 0.067 0.933 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.635 5.093 -14.849 20.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.213 4.213 3 Si 0.766 3.234 4 H -0.184 1.184 5 H -0.239 1.239 6 H -0.179 1.179 7 C -0.392 4.392 8 H 0.058 0.942 9 N -0.301 5.301 10 C 0.005 3.995 11 C -0.008 4.008 12 N -0.359 5.359 13 C 0.338 3.662 14 O -0.470 6.470 15 C -0.232 4.232 16 C -0.125 4.125 17 C -0.181 4.181 18 H 0.132 0.868 19 C -0.001 4.001 20 O -0.311 6.311 21 C 0.014 3.986 22 C -0.006 4.006 23 C -0.229 4.229 24 C -0.245 4.245 25 H 0.073 0.927 26 H 0.104 0.896 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.251 0.749 31 H 0.117 0.883 32 H 0.160 0.840 33 H 0.128 0.872 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.142 0.858 38 H 0.085 0.915 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.437 4.318 -14.897 20.521 hybrid contribution -0.826 0.639 0.737 1.278 sum 12.611 4.957 -14.159 19.599 Atomic orbital electron populations 1.70020 1.07953 1.27663 1.53079 1.26158 0.95606 1.01451 0.98091 0.85959 0.79388 0.79649 0.78374 1.18438 1.23894 1.17922 1.18528 0.88045 0.93251 1.39392 0.94174 1.43594 1.06592 1.52971 1.26911 1.21426 1.00002 0.93440 0.84667 1.21818 0.98876 0.95437 0.84688 1.45826 1.66011 1.18791 1.05304 1.19758 0.76443 0.85795 0.84185 1.90678 1.48440 1.20950 1.86897 1.23375 1.02129 1.07148 0.90525 1.23291 0.94177 1.00137 0.94860 1.24449 1.00323 1.01040 0.92290 0.86757 1.23169 0.85069 1.02648 0.89165 1.89053 1.34098 1.81795 1.26159 1.22840 0.85925 0.96855 0.92969 1.21539 0.94192 0.97346 0.87563 1.23043 0.99634 0.95506 1.04669 1.23333 0.99967 0.98107 1.03068 0.92710 0.89572 0.93310 0.95011 0.92292 0.74946 0.88300 0.83985 0.87180 0.88594 0.88059 0.88175 0.85767 0.91462 0.87121 0.86868 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.18 13.97 21.65 0.30 -57.88 16 2 C -0.02 -0.90 5.28 84.86 0.45 -0.45 16 3 Si 0.94 43.38 25.32 68.60 1.74 45.12 16 4 H -0.26 -10.73 6.52 99.48 0.65 -10.08 16 5 H -0.31 -14.82 7.11 99.48 0.71 -14.12 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.26 -14.53 8.93 84.03 0.75 -13.78 16 8 H 0.04 2.52 6.85 -2.91 -0.02 2.50 16 9 N -0.58 -26.13 2.38 -678.02 -1.61 -27.74 16 10 C 0.13 5.00 4.68 86.38 0.40 5.40 16 11 C 0.12 4.49 6.00 86.38 0.52 5.01 16 12 N -0.71 -21.53 5.45 -463.05 -2.52 -24.05 16 13 C 0.55 17.83 7.42 87.66 0.65 18.48 16 14 O -0.59 -24.80 16.85 -3.01 -0.05 -24.85 16 15 C -0.23 -5.11 2.84 -51.91 -0.15 -5.26 16 16 C -0.09 -1.49 9.89 30.59 0.30 -1.19 16 17 C -0.16 -3.16 6.90 -9.78 -0.07 -3.23 16 18 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 19 C 0.08 1.13 7.45 72.49 0.54 1.67 16 20 O -0.39 -8.10 11.62 -148.98 -1.73 -9.83 16 21 C 0.09 1.59 7.09 72.48 0.51 2.10 16 22 C 0.10 3.78 6.57 44.99 0.30 4.08 16 23 C -0.19 -7.04 9.80 30.59 0.30 -6.74 16 24 C -0.20 -7.14 10.34 30.59 0.32 -6.82 16 25 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 26 H 0.09 2.67 8.07 -2.38 -0.02 2.65 16 27 H 0.05 2.02 3.45 -2.39 -0.01 2.02 16 28 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.41 9.62 8.28 -92.71 -0.77 8.85 16 31 H 0.10 1.94 8.14 -2.39 -0.02 1.93 16 32 H 0.14 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.10 1.71 7.88 -2.39 -0.02 1.69 16 37 H 0.12 3.90 8.14 -2.38 -0.02 3.88 16 38 H 0.07 2.99 6.44 -2.39 -0.02 2.98 16 39 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 40 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.06 2.55 8.14 -2.38 -0.02 2.53 16 Total: -1.00 -74.80 336.49 1.16 -73.64 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.21 Total: 26.32 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 4.82 Total: -0.73 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -3.83 Total: -109.67 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -1.78 Total: -34.68 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.74 Total: 45.12 kcal Total: -74.80 1.16 -73.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691211030.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.786 kcal (2) G-P(sol) polarization free energy of solvation -74.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds