Wall clock time and date at job start Tue Mar 31 2020 01:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 120.00110 * 2 1 4 4 H 1.07991 * 120.00216 * 322.05362 * 3 2 1 5 5 C 1.38813 * 119.99492 * 142.04440 * 3 2 1 6 6 N 1.31618 * 119.99472 * 157.02292 * 5 3 2 7 7 Si 1.86793 * 120.00357 * 337.02856 * 5 3 2 8 8 H 1.48502 * 109.47264 * 95.68137 * 7 5 3 9 9 H 1.48497 * 109.47307 * 215.67737 * 7 5 3 10 10 H 1.48503 * 109.47165 * 335.67829 * 7 5 3 11 11 C 1.46505 * 119.99786 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.47198 * 89.99731 * 11 2 1 13 13 N 1.46495 * 109.47191 * 180.02562 * 12 11 2 14 14 C 1.34776 * 120.00109 * 179.97438 * 13 12 11 15 15 O 1.21278 * 119.99835 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99771 * 179.97438 * 14 13 12 17 17 H 1.09000 * 109.47142 * 15.00879 * 16 14 13 18 18 F 1.39895 * 109.47175 * 255.00094 * 16 14 13 19 19 C 1.50707 * 109.46436 * 135.00360 * 16 14 13 20 20 C 1.38244 * 119.99572 * 245.00056 * 19 16 14 21 21 C 1.38232 * 119.99550 * 180.02562 * 20 19 16 22 22 C 1.38233 * 120.00218 * 359.94983 * 21 20 19 23 23 C 1.38229 * 120.00299 * 0.02562 * 22 21 20 24 24 C 1.38228 * 120.00519 * 64.97861 * 19 16 14 25 25 H 1.09007 * 109.46892 * 265.64835 * 1 2 3 26 26 H 1.08998 * 109.46884 * 25.64319 * 1 2 3 27 27 H 1.08996 * 109.47167 * 145.65214 * 1 2 3 28 28 H 0.96998 * 119.99963 * 180.02562 * 6 5 3 29 29 H 1.08996 * 109.47020 * 329.99569 * 11 2 1 30 30 H 1.09000 * 109.46697 * 209.99717 * 11 2 1 31 31 H 1.08997 * 109.47082 * 59.99467 * 12 11 2 32 32 H 1.09006 * 109.46992 * 299.99948 * 12 11 2 33 33 H 0.97008 * 119.99743 * 359.97438 * 13 12 11 34 34 H 1.07994 * 120.00109 * 359.97361 * 20 19 16 35 35 H 1.07999 * 119.99897 * 179.97438 * 21 20 19 36 36 H 1.08006 * 120.00010 * 179.72272 * 22 21 20 37 37 H 1.07996 * 120.00692 * 179.97438 * 23 22 21 38 38 H 1.07999 * 119.99562 * 0.02562 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7811 2.0223 -0.5751 5 6 3.3177 1.3129 0.7394 6 7 4.2045 2.2302 0.4164 7 14 3.6307 0.1819 2.1927 8 1 4.4683 -0.9642 1.7566 9 1 4.3373 0.9330 3.2612 10 1 2.3355 -0.3222 2.7157 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7099 -1.4433 13 7 3.1843 -2.9789 -1.4439 14 6 3.5207 -3.5624 -2.6113 15 8 3.2170 -3.0370 -3.6614 16 6 4.2741 -4.8675 -2.6118 17 1 4.2257 -5.3154 -1.6192 18 9 5.6104 -4.6344 -2.9537 19 6 3.6546 -5.8046 -3.6164 20 6 3.0480 -6.9716 -3.1906 21 6 2.4803 -7.8314 -4.1122 22 6 2.5180 -7.5238 -5.4593 23 6 3.1240 -6.3566 -5.8850 24 6 3.6923 -5.4971 -4.9635 25 1 -0.3633 -0.0780 1.0248 26 1 -0.3633 0.9264 -0.4447 27 1 -0.3633 -0.8484 -0.5798 28 1 5.0208 2.3188 0.9328 29 1 1.6084 -2.0286 0.5130 30 1 3.1499 -1.1386 0.5133 31 1 3.0414 -0.9500 -1.9568 32 1 1.4999 -1.8400 -1.9572 33 1 3.4269 -3.3993 -0.6039 34 1 3.0186 -7.2120 -2.1382 35 1 2.0068 -8.7434 -3.7796 36 1 2.0784 -8.1978 -6.1797 37 1 3.1539 -6.1164 -6.9375 38 1 4.1662 -4.5854 -5.2961 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713468385.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:08 Heat of formation + Delta-G solvation = -30.246067 kcal Electronic energy + Delta-G solvation = -21415.963020 eV Core-core repulsion = 17980.835415 eV Total energy + Delta-G solvation = -3435.127604 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.00293 -39.79690 -38.84633 -36.39646 -34.24646 -32.59889 -31.67752 -31.08996 -29.24898 -27.09433 -26.09726 -23.35811 -22.83413 -21.87585 -21.00056 -20.37134 -17.81381 -17.42236 -16.74407 -16.57348 -16.08664 -15.58260 -15.33556 -14.84794 -14.53539 -14.46747 -14.14553 -13.82134 -13.58591 -13.20865 -12.90631 -12.89915 -12.53619 -12.52025 -12.24253 -11.92612 -11.61278 -11.30717 -11.16651 -11.08090 -10.73138 -10.55254 -10.05232 -9.80369 -9.65731 -9.09485 -9.05493 -8.84085 -8.58423 -6.94618 -6.07429 -3.50440 1.00782 1.22605 2.53755 3.05895 3.20505 3.39326 3.43900 3.58903 4.14312 4.37512 4.43369 4.50469 4.76704 4.80495 4.93826 5.04104 5.09390 5.28846 5.31123 5.43623 5.66131 5.68982 5.72446 5.86273 6.06259 6.19459 6.20759 6.31484 6.33892 6.41481 6.55804 6.58920 6.65330 6.75869 6.77649 7.54383 7.95764 8.20808 8.31038 8.88132 9.61457 10.00671 11.07845 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.026278 B = 0.003891 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.256405 B = 7194.872451 C = 7468.045917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.606 5.606 3 C -0.277 4.277 4 H 0.081 0.919 5 C 0.037 3.963 6 N -0.893 5.893 7 Si 0.878 3.122 8 H -0.285 1.285 9 H -0.299 1.299 10 H -0.269 1.269 11 C 0.129 3.871 12 C 0.098 3.902 13 N -0.714 5.714 14 C 0.491 3.509 15 O -0.517 6.517 16 C 0.127 3.873 17 H 0.105 0.895 18 F -0.183 7.183 19 C -0.125 4.125 20 C -0.097 4.097 21 C -0.129 4.129 22 C -0.108 4.108 23 C -0.126 4.126 24 C -0.067 4.067 25 H 0.010 0.990 26 H 0.048 0.952 27 H 0.028 0.972 28 H 0.265 0.735 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.398 0.602 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.397 -21.161 -5.957 22.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.330 5.330 3 C -0.406 4.406 4 H 0.098 0.902 5 C -0.164 4.164 6 N -0.534 5.534 7 Si 0.707 3.293 8 H -0.213 1.213 9 H -0.226 1.226 10 H -0.194 1.194 11 C 0.002 3.998 12 C -0.028 4.028 13 N -0.365 5.365 14 C 0.273 3.727 15 O -0.392 6.392 16 C 0.087 3.913 17 H 0.123 0.877 18 F -0.164 7.164 19 C -0.126 4.126 20 C -0.115 4.115 21 C -0.147 4.147 22 C -0.126 4.126 23 C -0.144 4.144 24 C -0.085 4.085 25 H 0.028 0.972 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.232 0.768 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.479 -20.597 -6.670 21.792 hybrid contribution 0.544 -0.694 1.271 1.546 sum -1.935 -21.291 -5.399 22.050 Atomic orbital electron populations 1.21126 0.84024 0.99371 0.97594 1.43911 1.00985 1.01571 1.86508 1.18821 1.06370 0.90666 1.24721 0.90156 1.25502 0.96701 0.96525 0.97677 1.69885 1.08300 1.35997 1.39171 0.86924 0.77895 0.80066 0.84375 1.21346 1.22642 1.19372 1.21340 0.97091 0.88687 0.92711 1.22383 0.95840 0.82993 1.01536 1.46158 1.57551 1.25094 1.07696 1.20648 0.80910 0.86271 0.84849 1.90719 1.53310 1.64122 1.31045 1.20298 0.77958 0.93820 0.99198 0.87670 1.92917 1.33717 1.95678 1.94068 1.19766 1.02445 0.95888 0.94496 1.20988 0.97306 0.93282 0.99944 1.21075 1.00574 0.99794 0.93251 1.21251 0.98467 0.96953 0.95961 1.21197 0.98713 0.94623 0.99845 1.21156 0.96491 0.98760 0.92092 0.97224 0.93336 0.95333 0.92546 0.93680 0.92323 0.90270 0.91930 0.76813 0.85615 0.85711 0.85900 0.85643 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.42 10.70 59.85 0.64 3.06 16 2 N -0.61 -14.16 2.47 -181.11 -0.45 -14.61 16 3 C -0.28 -7.68 9.88 -15.06 -0.15 -7.83 16 4 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 5 C 0.04 1.06 5.29 -17.43 -0.09 0.97 16 6 N -0.89 -26.98 13.97 55.49 0.78 -26.21 16 7 Si 0.88 21.43 25.10 -169.99 -4.27 17.16 16 8 H -0.29 -6.60 6.68 56.52 0.38 -6.22 16 9 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 C 0.13 2.62 4.65 -4.04 -0.02 2.60 16 12 C 0.10 1.87 6.00 -4.04 -0.02 1.84 16 13 N -0.71 -11.15 5.56 -60.29 -0.33 -11.48 16 14 C 0.49 7.94 7.16 -10.99 -0.08 7.86 16 15 O -0.52 -10.22 15.19 5.56 0.08 -10.14 16 16 C 0.13 1.61 4.01 -29.03 -0.12 1.49 16 17 H 0.11 0.92 7.74 -51.93 -0.40 0.52 16 18 F -0.18 -2.67 16.92 2.25 0.04 -2.64 16 19 C -0.13 -1.54 5.01 -104.62 -0.52 -2.07 16 20 C -0.10 -0.96 9.67 -39.58 -0.38 -1.34 16 21 C -0.13 -1.16 10.05 -39.59 -0.40 -1.55 16 22 C -0.11 -1.00 10.05 -39.59 -0.40 -1.39 16 23 C -0.13 -1.34 10.05 -39.59 -0.40 -1.74 16 24 C -0.07 -0.87 8.57 -39.59 -0.34 -1.21 16 25 H 0.01 0.18 8.14 -51.92 -0.42 -0.24 16 26 H 0.05 0.93 8.00 -51.93 -0.42 0.52 16 27 H 0.03 0.48 8.10 -51.93 -0.42 0.06 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 30 H 0.06 1.30 3.38 -51.93 -0.18 1.12 16 31 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.40 4.92 8.37 -40.82 -0.34 4.58 16 34 H 0.13 0.91 7.95 -52.49 -0.42 0.49 16 35 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 36 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 37 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.13 1.89 7.41 -52.49 -0.39 1.50 16 LS Contribution 325.16 15.07 4.90 4.90 Total: -1.00 -33.29 325.16 -6.63 -39.92 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.10 Total: 2.42 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -2.28 Total: 0.68 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.01 Total: -52.30 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.14 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.27 Total: 17.16 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.29 -6.63 -39.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713468385.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.674 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds