Wall clock time and date at job start Tue Mar 31 2020 01:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 120.00110 * 2 1 4 4 H 1.07991 * 120.00216 * 322.05362 * 3 2 1 5 5 C 1.38813 * 119.99492 * 142.04440 * 3 2 1 6 6 N 1.31618 * 119.99472 * 157.02292 * 5 3 2 7 7 Si 1.86793 * 120.00357 * 337.02856 * 5 3 2 8 8 H 1.48502 * 109.47264 * 95.68137 * 7 5 3 9 9 H 1.48497 * 109.47307 * 215.67737 * 7 5 3 10 10 H 1.48503 * 109.47165 * 335.67829 * 7 5 3 11 11 C 1.46505 * 119.99786 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.47198 * 89.99731 * 11 2 1 13 13 N 1.46495 * 109.47191 * 180.02562 * 12 11 2 14 14 C 1.34776 * 120.00109 * 179.97438 * 13 12 11 15 15 O 1.21278 * 119.99835 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99771 * 179.97438 * 14 13 12 17 17 H 1.09000 * 109.47142 * 15.00879 * 16 14 13 18 18 F 1.39895 * 109.47175 * 255.00094 * 16 14 13 19 19 C 1.50707 * 109.46436 * 135.00360 * 16 14 13 20 20 C 1.38244 * 119.99572 * 245.00056 * 19 16 14 21 21 C 1.38232 * 119.99550 * 180.02562 * 20 19 16 22 22 C 1.38233 * 120.00218 * 359.94983 * 21 20 19 23 23 C 1.38229 * 120.00299 * 0.02562 * 22 21 20 24 24 C 1.38228 * 120.00519 * 64.97861 * 19 16 14 25 25 H 1.09007 * 109.46892 * 265.64835 * 1 2 3 26 26 H 1.08998 * 109.46884 * 25.64319 * 1 2 3 27 27 H 1.08996 * 109.47167 * 145.65214 * 1 2 3 28 28 H 0.96998 * 119.99963 * 180.02562 * 6 5 3 29 29 H 1.08996 * 109.47020 * 329.99569 * 11 2 1 30 30 H 1.09000 * 109.46697 * 209.99717 * 11 2 1 31 31 H 1.08997 * 109.47082 * 59.99467 * 12 11 2 32 32 H 1.09006 * 109.46992 * 299.99948 * 12 11 2 33 33 H 0.97008 * 119.99743 * 359.97438 * 13 12 11 34 34 H 1.07994 * 120.00109 * 359.97361 * 20 19 16 35 35 H 1.07999 * 119.99897 * 179.97438 * 21 20 19 36 36 H 1.08006 * 120.00010 * 179.72272 * 22 21 20 37 37 H 1.07996 * 120.00692 * 179.97438 * 23 22 21 38 38 H 1.07999 * 119.99562 * 0.02562 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7811 2.0223 -0.5751 5 6 3.3177 1.3129 0.7394 6 7 4.2045 2.2302 0.4164 7 14 3.6307 0.1819 2.1927 8 1 4.4683 -0.9642 1.7566 9 1 4.3373 0.9330 3.2612 10 1 2.3355 -0.3222 2.7157 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7099 -1.4433 13 7 3.1843 -2.9789 -1.4439 14 6 3.5207 -3.5624 -2.6113 15 8 3.2170 -3.0370 -3.6614 16 6 4.2741 -4.8675 -2.6118 17 1 4.2257 -5.3154 -1.6192 18 9 5.6104 -4.6344 -2.9537 19 6 3.6546 -5.8046 -3.6164 20 6 3.0480 -6.9716 -3.1906 21 6 2.4803 -7.8314 -4.1122 22 6 2.5180 -7.5238 -5.4593 23 6 3.1240 -6.3566 -5.8850 24 6 3.6923 -5.4971 -4.9635 25 1 -0.3633 -0.0780 1.0248 26 1 -0.3633 0.9264 -0.4447 27 1 -0.3633 -0.8484 -0.5798 28 1 5.0208 2.3188 0.9328 29 1 1.6084 -2.0286 0.5130 30 1 3.1499 -1.1386 0.5133 31 1 3.0414 -0.9500 -1.9568 32 1 1.4999 -1.8400 -1.9572 33 1 3.4269 -3.3993 -0.6039 34 1 3.0186 -7.2120 -2.1382 35 1 2.0068 -8.7434 -3.7796 36 1 2.0784 -8.1978 -6.1797 37 1 3.1539 -6.1164 -6.9375 38 1 4.1662 -4.5854 -5.2961 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713468385.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:07 Heat of formation + Delta-G solvation = -52.994075 kcal Electronic energy + Delta-G solvation = -21416.949447 eV Core-core repulsion = 17980.835415 eV Total energy + Delta-G solvation = -3436.114032 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.07449 -40.95847 -39.80169 -38.11212 -35.77857 -33.80356 -33.43879 -31.84121 -30.68076 -28.30179 -27.87163 -24.90838 -23.60797 -22.94305 -22.72985 -21.61030 -19.22507 -18.38985 -18.28335 -17.91336 -17.31915 -17.04055 -16.56000 -16.14902 -15.75744 -15.58077 -15.39281 -15.25718 -14.90281 -14.56024 -14.33687 -14.27373 -13.78741 -13.75996 -13.57819 -13.31346 -13.12563 -12.75997 -12.50153 -12.34139 -12.08436 -11.94778 -11.93323 -11.59232 -11.03370 -10.69322 -10.24583 -9.87649 -9.85584 -8.86258 -8.23770 -5.65451 0.21479 0.46030 1.27057 1.28216 1.42812 1.54733 1.84607 2.40152 2.78811 3.00966 3.23534 3.32354 3.57070 3.59592 3.95715 4.07402 4.12566 4.13128 4.20777 4.27129 4.47784 4.56191 4.67497 4.69911 4.84412 4.94285 4.96324 5.07585 5.10956 5.12099 5.26576 5.46869 5.53628 5.56465 5.89015 6.02676 6.12931 6.32124 6.91326 6.99735 7.55998 7.96305 8.95863 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.026278 B = 0.003891 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.256405 B = 7194.872451 C = 7468.045917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.621 5.621 3 C -0.275 4.275 4 H 0.035 0.965 5 C -0.023 4.023 6 N -0.948 5.948 7 Si 0.950 3.050 8 H -0.261 1.261 9 H -0.308 1.308 10 H -0.251 1.251 11 C 0.129 3.871 12 C 0.114 3.886 13 N -0.702 5.702 14 C 0.486 3.514 15 O -0.562 6.562 16 C 0.132 3.868 17 H 0.155 0.845 18 F -0.198 7.198 19 C -0.147 4.147 20 C -0.095 4.095 21 C -0.128 4.128 22 C -0.107 4.107 23 C -0.139 4.139 24 C -0.099 4.099 25 H 0.025 0.975 26 H 0.038 0.962 27 H 0.059 0.941 28 H 0.264 0.736 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.030 0.970 32 H 0.064 0.936 33 H 0.418 0.582 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.151 0.849 37 H 0.135 0.865 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.605 -25.558 -4.139 26.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.346 5.346 3 C -0.405 4.405 4 H 0.053 0.947 5 C -0.220 4.220 6 N -0.591 5.591 7 Si 0.776 3.224 8 H -0.188 1.188 9 H -0.237 1.237 10 H -0.175 1.175 11 C 0.003 3.997 12 C -0.012 4.012 13 N -0.355 5.355 14 C 0.270 3.730 15 O -0.440 6.440 16 C 0.093 3.907 17 H 0.173 0.827 18 F -0.178 7.178 19 C -0.148 4.148 20 C -0.113 4.113 21 C -0.145 4.145 22 C -0.125 4.125 23 C -0.157 4.157 24 C -0.117 4.117 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.256 0.744 34 H 0.177 0.823 35 H 0.176 0.824 36 H 0.169 0.831 37 H 0.153 0.847 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.706 -25.051 -4.836 25.782 hybrid contribution 0.834 0.682 0.555 1.213 sum -2.872 -24.369 -4.281 24.908 Atomic orbital electron populations 1.21246 0.81710 1.00350 0.98966 1.44053 1.02576 1.01152 1.86795 1.18683 1.06558 0.91551 1.23679 0.94679 1.26235 0.96419 0.98924 1.00427 1.70038 1.09184 1.39165 1.40684 0.85763 0.78686 0.78406 0.79507 1.18783 1.23670 1.17456 1.21426 0.96858 0.88297 0.93144 1.21895 0.95352 0.83468 1.00479 1.45945 1.57016 1.23747 1.08800 1.21402 0.80312 0.87214 0.84028 1.90703 1.54940 1.65603 1.32730 1.20482 0.76509 0.91682 1.01992 0.82724 1.92887 1.34826 1.95688 1.94428 1.19874 1.03883 0.97124 0.93880 1.21371 0.95962 0.92020 1.01937 1.21545 0.99543 1.00559 0.92884 1.21640 0.97376 0.96363 0.97144 1.21402 0.98930 0.95180 1.00154 1.21131 0.98305 0.98700 0.93583 0.95631 0.94325 0.92195 0.92669 0.89185 0.93811 0.95129 0.91805 0.74425 0.82328 0.82395 0.83090 0.84689 0.87909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.49 10.70 127.77 1.37 5.85 16 2 N -0.62 -28.40 2.47 -726.92 -1.79 -30.19 16 3 C -0.27 -15.64 9.88 84.03 0.83 -14.81 16 4 H 0.04 2.25 8.06 -2.92 -0.02 2.23 16 5 C -0.02 -1.34 5.29 84.86 0.45 -0.89 16 6 N -0.95 -59.43 13.97 21.65 0.30 -59.12 16 7 Si 0.95 43.73 25.10 68.60 1.72 45.46 16 8 H -0.26 -10.93 6.68 99.48 0.66 -10.26 16 9 H -0.31 -14.58 7.11 99.48 0.71 -13.88 16 10 H -0.25 -10.74 7.11 99.48 0.71 -10.04 16 11 C 0.13 4.91 4.65 86.38 0.40 5.31 16 12 C 0.11 4.30 6.00 86.38 0.52 4.82 16 13 N -0.70 -20.56 5.56 -463.06 -2.57 -23.14 16 14 C 0.49 15.38 7.16 87.66 0.63 16.01 16 15 O -0.56 -22.99 15.19 -3.02 -0.05 -23.03 16 16 C 0.13 3.11 4.01 29.10 0.12 3.23 16 17 H 0.16 2.03 7.74 -2.39 -0.02 2.01 16 18 F -0.20 -5.66 16.92 44.97 0.76 -4.90 16 19 C -0.15 -3.40 5.01 -19.86 -0.10 -3.49 16 20 C -0.10 -1.53 9.67 22.27 0.22 -1.31 16 21 C -0.13 -1.77 10.05 22.27 0.22 -1.55 16 22 C -0.11 -1.67 10.05 22.27 0.22 -1.45 16 23 C -0.14 -2.89 10.05 22.27 0.22 -2.66 16 24 C -0.10 -2.62 8.57 22.27 0.19 -2.43 16 25 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.04 1.47 8.00 -2.39 -0.02 1.45 16 27 H 0.06 1.83 8.10 -2.39 -0.02 1.81 16 28 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 29 H 0.09 2.68 8.07 -2.39 -0.02 2.66 16 30 H 0.04 1.82 3.38 -2.39 -0.01 1.81 16 31 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 33 H 0.42 8.76 8.37 -92.70 -0.78 7.98 16 34 H 0.16 1.42 7.95 -2.91 -0.02 1.39 16 35 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 36 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 37 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 38 H 0.10 3.22 7.41 -2.91 -0.02 3.20 16 Total: -1.00 -77.51 325.16 3.91 -73.60 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.25 Total: 14.71 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 5.29 Total: 6.62 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -4.06 Total: -112.45 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.05 Total: -23.03 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.76 Total: -4.90 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.72 Total: 45.46 kcal Total: -77.51 3.91 -73.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713468385.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.609 kcal (2) G-P(sol) polarization free energy of solvation -77.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds