Wall clock time and date at job start Tue Mar 31 2020 02:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 120.00044 * 2 1 4 4 H 1.48499 * 109.46993 * 269.99901 * 3 2 1 5 5 H 1.48502 * 109.46766 * 30.00075 * 3 2 1 6 6 H 1.48501 * 109.47337 * 149.99675 * 3 2 1 7 7 C 1.38815 * 120.00431 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99614 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00272 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00054 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.46747 * 35.00537 * 10 9 7 12 12 C 1.52993 * 109.47066 * 155.00265 * 10 9 7 13 13 N 1.46496 * 109.47551 * 305.00566 * 12 10 9 14 14 C 1.34777 * 120.00258 * 180.02562 * 13 12 10 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99762 * 179.97438 * 14 13 12 17 17 H 1.08991 * 115.51028 * 325.36737 * 16 14 13 18 18 C 1.53005 * 117.43116 * 110.65207 * 16 14 13 19 19 H 1.08996 * 119.80293 * 355.36114 * 18 16 14 20 20 C 1.54471 * 118.06193 * 198.07999 * 18 16 14 21 21 O 1.44422 * 104.81095 * 321.13000 * 20 18 16 22 22 C 1.45921 * 105.86085 * 319.97448 * 21 20 18 23 23 C 1.53000 * 117.43078 * 179.97438 * 16 14 13 24 24 H 1.09010 * 119.80697 * 4.63217 * 23 16 14 25 25 C 1.53003 * 109.47427 * 275.00873 * 10 9 7 26 26 C 1.52998 * 117.50051 * 128.62109 * 25 10 9 27 27 C 1.52998 * 117.49758 * 59.99736 * 25 10 9 28 28 H 0.96991 * 120.00327 * 359.97438 * 1 2 3 29 29 H 0.96999 * 119.99744 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47250 * 185.00344 * 12 10 9 31 31 H 1.09004 * 109.46862 * 65.00368 * 12 10 9 32 32 H 0.96999 * 119.99694 * 359.97438 * 13 12 10 33 33 H 1.09004 * 110.37532 * 79.96431 * 20 18 16 34 34 H 1.09002 * 110.37385 * 202.29239 * 20 18 16 35 35 H 1.08997 * 109.50970 * 281.46637 * 22 21 20 36 36 H 1.08998 * 111.92554 * 158.66928 * 22 21 20 37 37 H 1.09001 * 115.54634 * 274.32653 * 25 10 9 38 38 H 1.09000 * 117.49588 * 359.97438 * 26 25 10 39 39 H 1.09001 * 117.49681 * 145.01948 * 26 25 10 40 40 H 1.09004 * 117.49565 * 214.98027 * 27 25 10 41 41 H 1.09001 * 117.50222 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1123 -2.4708 0.0000 11 1 3.5647 -3.2064 -0.5892 12 6 5.4992 -2.2588 -0.6101 13 7 5.3613 -1.6639 -1.9417 14 6 6.4590 -1.3868 -2.6730 15 8 7.5609 -1.6296 -2.2286 16 6 6.3169 -0.7753 -4.0431 17 1 5.4461 -1.0983 -4.6133 18 6 6.7758 0.6737 -4.2193 19 1 7.1149 1.2435 -3.3543 20 6 6.2664 1.4524 -5.4522 21 8 6.2769 0.4887 -6.5278 22 6 7.4965 -0.2928 -6.3512 23 6 7.6014 -0.4845 -4.8218 24 1 8.5644 -0.7893 -4.4118 25 6 4.2588 -2.9752 1.4371 26 6 3.8323 -4.4156 1.7272 27 6 2.9756 -3.2493 2.2238 28 1 -0.4850 0.8399 0.0004 29 1 3.8647 -0.3620 -0.0004 30 1 6.0106 -3.2179 -0.6919 31 1 6.0786 -1.5913 0.0278 32 1 4.4799 -1.4701 -2.2973 33 1 5.2537 1.8167 -5.2792 34 1 6.9353 2.2824 -5.6798 35 1 8.3498 0.2753 -6.7216 36 1 7.4368 -1.2592 -6.8518 37 1 5.1131 -2.5821 1.9884 38 1 3.4469 -5.0037 0.8943 39 1 4.4061 -4.9705 2.4695 40 1 2.9857 -3.0369 3.2929 41 1 2.0269 -3.0699 1.7179 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713874163.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:06 Heat of formation + Delta-G solvation = -8.568610 kcal Electronic energy + Delta-G solvation = -22057.517901 eV Core-core repulsion = 18746.790607 eV Total energy + Delta-G solvation = -3310.727294 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.76643 -39.00764 -37.63129 -34.86336 -34.33810 -33.47784 -31.26542 -28.94924 -28.77502 -26.48302 -23.80078 -22.56825 -21.75304 -21.36266 -20.81498 -20.15652 -19.52128 -18.02234 -17.32110 -16.12405 -15.88212 -15.53472 -15.44211 -15.22339 -14.82441 -14.36142 -14.09442 -13.79448 -13.38073 -13.11444 -12.84558 -12.78571 -12.45918 -11.88448 -11.79245 -11.54231 -11.44255 -10.97281 -10.91381 -10.76637 -10.49318 -10.40157 -10.30091 -9.97061 -9.78270 -9.73436 -9.52067 -9.40757 -9.04773 -8.82378 -7.39556 -5.85279 -3.21778 2.47840 3.12151 3.30722 3.34909 3.40054 3.49878 3.74253 4.36918 4.44847 4.47230 4.51240 4.62690 4.67236 5.06495 5.10398 5.17846 5.20102 5.29991 5.38150 5.41246 5.46484 5.53608 5.55058 5.63541 5.70283 5.71944 5.86370 5.89880 5.95674 6.10728 6.15946 6.44218 6.45763 6.53550 6.69962 6.73030 6.96811 7.74585 7.88633 8.32452 8.37627 9.09901 9.82527 10.01720 11.32392 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014819 B = 0.005246 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.040677 B = 5336.285584 C = 6753.881526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.010 3.990 3 Si 0.880 3.120 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.242 4.242 8 H 0.092 0.908 9 N -0.742 5.742 10 C 0.198 3.802 11 H 0.065 0.935 12 C 0.116 3.884 13 N -0.710 5.710 14 C 0.542 3.458 15 O -0.551 6.551 16 C -0.143 4.143 17 H 0.128 0.872 18 C -0.173 4.173 19 H 0.129 0.871 20 C 0.073 3.927 21 O -0.378 6.378 22 C 0.072 3.928 23 C -0.168 4.168 24 H 0.135 0.865 25 C -0.164 4.164 26 C -0.193 4.193 27 C -0.154 4.154 28 H 0.260 0.740 29 H 0.362 0.638 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.412 0.588 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.716 -1.793 -7.871 15.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.187 4.187 3 Si 0.710 3.290 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.372 4.372 8 H 0.110 0.890 9 N -0.384 5.384 10 C 0.088 3.912 11 H 0.082 0.918 12 C -0.008 4.008 13 N -0.361 5.361 14 C 0.328 3.672 15 O -0.430 6.430 16 C -0.164 4.164 17 H 0.145 0.855 18 C -0.191 4.191 19 H 0.146 0.854 20 C -0.003 4.003 21 O -0.297 6.297 22 C -0.004 4.004 23 C -0.187 4.187 24 H 0.152 0.848 25 C -0.186 4.186 26 C -0.231 4.231 27 C -0.191 4.191 28 H 0.070 0.930 29 H 0.195 0.805 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.249 0.751 33 H 0.119 0.881 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 14.062 -2.037 -7.730 16.175 hybrid contribution 0.261 1.403 0.378 1.477 sum 14.323 -0.634 -7.351 16.112 Atomic orbital electron populations 1.69684 1.05075 1.25893 1.57091 1.24639 0.95128 0.97045 1.01858 0.86632 0.79270 0.85294 0.77794 1.21030 1.21831 1.20426 1.19003 0.80288 0.94558 1.43349 0.88992 1.42834 1.04112 1.01667 1.89820 1.20023 0.89720 0.89727 0.91683 0.91750 1.21671 0.98433 0.98123 0.82601 1.45931 1.09545 1.62726 1.17855 1.19419 0.84425 0.78088 0.85305 1.90665 1.26025 1.54061 1.72261 1.22102 1.00316 0.98286 0.95735 0.85454 1.24004 1.04327 0.89711 1.01101 0.85354 1.22962 1.02705 0.91177 0.83497 1.89349 1.42158 1.49013 1.49163 1.23233 0.87889 0.96551 0.92721 1.23974 0.96914 1.03341 0.94461 0.84768 1.22945 0.99095 0.97159 0.99411 1.22945 1.05419 0.91288 1.03428 1.22841 0.96811 1.00371 0.99098 0.92994 0.80503 0.91146 0.91834 0.75134 0.88144 0.90891 0.90917 0.88145 0.89173 0.89383 0.90028 0.90199 0.87081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.74 13.97 55.49 0.78 -26.97 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 3 Si 0.88 21.10 27.74 -169.99 -4.71 16.39 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 7 C -0.24 -6.17 9.11 -15.06 -0.14 -6.31 16 8 H 0.09 2.52 7.14 -52.48 -0.37 2.15 16 9 N -0.74 -15.73 4.34 -53.43 -0.23 -15.96 16 10 C 0.20 3.47 2.70 -67.93 -0.18 3.29 16 11 H 0.06 1.16 7.84 -51.93 -0.41 0.75 16 12 C 0.12 1.83 5.21 -4.05 -0.02 1.81 16 13 N -0.71 -10.97 5.39 -60.30 -0.32 -11.29 16 14 C 0.54 8.40 7.61 -10.98 -0.08 8.32 16 15 O -0.55 -10.02 16.34 5.56 0.09 -9.93 16 16 C -0.14 -1.84 5.55 -91.77 -0.51 -2.35 16 17 H 0.13 1.57 8.06 -51.93 -0.42 1.15 16 18 C -0.17 -1.99 6.95 -89.08 -0.62 -2.61 16 19 H 0.13 1.48 8.14 -51.93 -0.42 1.06 16 20 C 0.07 0.76 7.56 37.93 0.29 1.04 16 21 O -0.38 -4.46 11.33 -35.23 -0.40 -4.85 16 22 C 0.07 0.68 7.67 37.94 0.29 0.97 16 23 C -0.17 -1.87 6.63 -89.07 -0.59 -2.46 16 24 H 0.13 1.54 7.81 -51.92 -0.41 1.13 16 25 C -0.16 -2.73 5.36 -90.62 -0.49 -3.22 16 26 C -0.19 -2.86 10.18 -26.73 -0.27 -3.13 16 27 C -0.15 -2.70 9.78 -26.73 -0.26 -2.96 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.36 7.83 5.66 -40.82 -0.23 7.60 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.41 6.39 8.14 -40.82 -0.33 6.06 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.44 8.11 -51.93 -0.42 1.02 16 38 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.11 2.28 6.23 -51.93 -0.32 1.95 16 LS Contribution 338.28 15.07 5.10 5.10 Total: -1.00 -30.50 338.28 -8.69 -39.19 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -6.30 Total: 15.77 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -2.68 Total: -7.44 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.22 Total: -54.23 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.31 Total: -14.78 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.71 Total: 16.39 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.50 -8.69 -39.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713874163.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.621 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds