Wall clock time and date at job start Tue Mar 31 2020 02:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 120.00044 * 2 1 4 4 H 1.48499 * 109.46993 * 269.99901 * 3 2 1 5 5 H 1.48502 * 109.46766 * 30.00075 * 3 2 1 6 6 H 1.48501 * 109.47337 * 149.99675 * 3 2 1 7 7 C 1.38815 * 120.00431 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99614 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00272 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00054 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.46747 * 35.00537 * 10 9 7 12 12 C 1.52993 * 109.47066 * 155.00265 * 10 9 7 13 13 N 1.46496 * 109.47551 * 305.00566 * 12 10 9 14 14 C 1.34777 * 120.00258 * 180.02562 * 13 12 10 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99762 * 179.97438 * 14 13 12 17 17 H 1.08991 * 115.51028 * 325.36737 * 16 14 13 18 18 C 1.53005 * 117.43116 * 110.65207 * 16 14 13 19 19 H 1.08996 * 119.80293 * 355.36114 * 18 16 14 20 20 C 1.54471 * 118.06193 * 198.07999 * 18 16 14 21 21 O 1.44422 * 104.81095 * 321.13000 * 20 18 16 22 22 C 1.45921 * 105.86085 * 319.97448 * 21 20 18 23 23 C 1.53000 * 117.43078 * 179.97438 * 16 14 13 24 24 H 1.09010 * 119.80697 * 4.63217 * 23 16 14 25 25 C 1.53003 * 109.47427 * 275.00873 * 10 9 7 26 26 C 1.52998 * 117.50051 * 128.62109 * 25 10 9 27 27 C 1.52998 * 117.49758 * 59.99736 * 25 10 9 28 28 H 0.96991 * 120.00327 * 359.97438 * 1 2 3 29 29 H 0.96999 * 119.99744 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47250 * 185.00344 * 12 10 9 31 31 H 1.09004 * 109.46862 * 65.00368 * 12 10 9 32 32 H 0.96999 * 119.99694 * 359.97438 * 13 12 10 33 33 H 1.09004 * 110.37532 * 79.96431 * 20 18 16 34 34 H 1.09002 * 110.37385 * 202.29239 * 20 18 16 35 35 H 1.08997 * 109.50970 * 281.46637 * 22 21 20 36 36 H 1.08998 * 111.92554 * 158.66928 * 22 21 20 37 37 H 1.09001 * 115.54634 * 274.32653 * 25 10 9 38 38 H 1.09000 * 117.49588 * 359.97438 * 26 25 10 39 39 H 1.09001 * 117.49681 * 145.01948 * 26 25 10 40 40 H 1.09004 * 117.49565 * 214.98027 * 27 25 10 41 41 H 1.09001 * 117.50222 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1123 -2.4708 0.0000 11 1 3.5647 -3.2064 -0.5892 12 6 5.4992 -2.2588 -0.6101 13 7 5.3613 -1.6639 -1.9417 14 6 6.4590 -1.3868 -2.6730 15 8 7.5609 -1.6296 -2.2286 16 6 6.3169 -0.7753 -4.0431 17 1 5.4461 -1.0983 -4.6133 18 6 6.7758 0.6737 -4.2193 19 1 7.1149 1.2435 -3.3543 20 6 6.2664 1.4524 -5.4522 21 8 6.2769 0.4887 -6.5278 22 6 7.4965 -0.2928 -6.3512 23 6 7.6014 -0.4845 -4.8218 24 1 8.5644 -0.7893 -4.4118 25 6 4.2588 -2.9752 1.4371 26 6 3.8323 -4.4156 1.7272 27 6 2.9756 -3.2493 2.2238 28 1 -0.4850 0.8399 0.0004 29 1 3.8647 -0.3620 -0.0004 30 1 6.0106 -3.2179 -0.6919 31 1 6.0786 -1.5913 0.0278 32 1 4.4799 -1.4701 -2.2973 33 1 5.2537 1.8167 -5.2792 34 1 6.9353 2.2824 -5.6798 35 1 8.3498 0.2753 -6.7216 36 1 7.4368 -1.2592 -6.8518 37 1 5.1131 -2.5821 1.9884 38 1 3.4469 -5.0037 0.8943 39 1 4.4061 -4.9705 2.4695 40 1 2.9857 -3.0369 3.2929 41 1 2.0269 -3.0699 1.7179 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713874163.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:05 Heat of formation + Delta-G solvation = -29.309975 kcal Electronic energy + Delta-G solvation = -22058.417314 eV Core-core repulsion = 18746.790607 eV Total energy + Delta-G solvation = -3311.626707 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.73559 -40.17725 -39.03158 -36.20808 -35.31865 -35.19009 -33.10453 -30.33085 -29.69318 -27.52837 -25.35578 -24.09797 -23.05893 -22.52220 -21.68722 -21.49181 -20.81309 -19.64013 -18.65735 -17.14510 -17.01214 -16.95528 -16.48659 -16.30146 -16.08619 -15.90680 -15.44092 -15.20935 -14.70481 -14.56825 -14.30285 -14.02253 -13.57872 -13.14591 -13.02970 -12.76906 -12.74410 -12.59012 -12.38877 -12.28875 -12.10265 -11.66188 -11.42313 -11.29618 -11.10490 -11.02454 -10.94709 -10.83793 -10.59214 -10.10847 -9.32502 -7.96939 -5.29805 1.34037 1.39286 1.40946 1.47531 2.01934 2.50745 2.53422 2.88631 2.99060 3.37714 3.53530 3.58371 3.64175 3.69305 3.81138 3.83608 4.06914 4.14836 4.28551 4.31800 4.33877 4.49267 4.51383 4.60993 4.68562 4.75295 4.77195 4.80594 4.84152 4.89676 4.97483 5.08399 5.16218 5.38269 5.43007 5.49755 5.69136 5.84254 6.24980 6.49513 7.10703 7.14241 7.84879 8.04129 9.24121 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014819 B = 0.005246 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.040677 B = 5336.285584 C = 6753.881526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.057 4.057 3 Si 0.942 3.058 4 H -0.275 1.275 5 H -0.305 1.305 6 H -0.262 1.262 7 C -0.208 4.208 8 H 0.065 0.935 9 N -0.741 5.741 10 C 0.200 3.800 11 H 0.059 0.941 12 C 0.126 3.874 13 N -0.711 5.711 14 C 0.543 3.457 15 O -0.579 6.579 16 C -0.159 4.159 17 H 0.130 0.870 18 C -0.173 4.173 19 H 0.128 0.872 20 C 0.075 3.925 21 O -0.399 6.399 22 C 0.074 3.926 23 C -0.158 4.158 24 H 0.132 0.868 25 C -0.170 4.170 26 C -0.161 4.161 27 C -0.176 4.176 28 H 0.254 0.746 29 H 0.363 0.637 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.412 0.588 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.238 -1.807 -8.482 18.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.249 4.249 3 Si 0.771 3.229 4 H -0.201 1.201 5 H -0.233 1.233 6 H -0.187 1.187 7 C -0.339 4.339 8 H 0.082 0.918 9 N -0.384 5.384 10 C 0.091 3.909 11 H 0.077 0.923 12 C 0.001 3.999 13 N -0.361 5.361 14 C 0.331 3.669 15 O -0.460 6.460 16 C -0.180 4.180 17 H 0.148 0.852 18 C -0.192 4.192 19 H 0.146 0.854 20 C -0.002 4.002 21 O -0.318 6.318 22 C -0.002 4.002 23 C -0.177 4.177 24 H 0.149 0.851 25 C -0.191 4.191 26 C -0.199 4.199 27 C -0.214 4.214 28 H 0.063 0.937 29 H 0.196 0.804 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.248 0.752 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.110 0.890 39 H 0.128 0.872 40 H 0.106 0.894 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 16.638 -2.085 -8.346 18.730 hybrid contribution -0.496 1.264 0.578 1.476 sum 16.142 -0.821 -7.768 17.932 Atomic orbital electron populations 1.69852 1.06951 1.26241 1.60288 1.25297 0.95763 1.00457 1.03376 0.85608 0.78314 0.80893 0.78077 1.20108 1.23289 1.18681 1.18909 0.82010 0.93159 1.39778 0.91760 1.42787 1.02604 1.03260 1.89722 1.20134 0.90240 0.87867 0.92616 0.92327 1.21546 0.96877 0.98788 0.82647 1.45960 1.09659 1.62698 1.17778 1.19793 0.83749 0.77394 0.85990 1.90646 1.26917 1.55317 1.73144 1.22057 1.01721 0.99664 0.94579 0.85181 1.24102 1.04117 0.89318 1.01616 0.85445 1.23069 1.03267 0.91329 0.82526 1.89331 1.43345 1.49590 1.49538 1.23418 0.87972 0.97386 0.91402 1.24039 0.95789 1.02239 0.95589 0.85067 1.22897 0.98852 0.99101 0.98272 1.23017 1.03164 0.90230 1.03488 1.22715 0.95632 1.03674 0.99368 0.93655 0.80373 0.89802 0.92083 0.75186 0.88249 0.88615 0.88595 0.86937 0.87793 0.88959 0.87174 0.89364 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.48 13.97 21.65 0.30 -60.18 16 2 C -0.06 -3.20 5.50 84.86 0.47 -2.73 16 3 Si 0.94 43.82 27.74 68.60 1.90 45.72 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.31 -14.84 7.11 99.48 0.71 -14.13 16 6 H -0.26 -11.28 6.52 99.48 0.65 -10.63 16 7 C -0.21 -10.72 9.11 84.03 0.77 -9.96 16 8 H 0.06 3.66 7.14 -2.91 -0.02 3.64 16 9 N -0.74 -30.90 4.34 -322.94 -1.40 -32.30 16 10 C 0.20 6.75 2.70 44.99 0.12 6.87 16 11 H 0.06 2.07 7.84 -2.39 -0.02 2.05 16 12 C 0.13 3.74 5.21 86.38 0.45 4.19 16 13 N -0.71 -21.06 5.39 -463.07 -2.49 -23.55 16 14 C 0.54 16.16 7.61 87.66 0.67 16.83 16 15 O -0.58 -20.30 16.34 -3.03 -0.05 -20.35 16 16 C -0.16 -3.88 5.55 -11.54 -0.06 -3.94 16 17 H 0.13 3.07 8.06 -2.39 -0.02 3.05 16 18 C -0.17 -3.66 6.95 -9.79 -0.07 -3.73 16 19 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 20 C 0.07 1.37 7.56 72.48 0.55 1.92 16 21 O -0.40 -8.49 11.33 -148.98 -1.69 -10.18 16 22 C 0.07 1.20 7.67 72.49 0.56 1.75 16 23 C -0.16 -3.20 6.63 -9.79 -0.06 -3.26 16 24 H 0.13 2.77 7.81 -2.38 -0.02 2.75 16 25 C -0.17 -5.33 5.36 -10.79 -0.06 -5.39 16 26 C -0.16 -4.38 10.18 30.59 0.31 -4.06 16 27 C -0.18 -6.08 9.78 30.59 0.30 -5.78 16 28 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 29 H 0.36 15.14 5.66 -92.71 -0.52 14.61 16 30 H 0.08 2.31 8.14 -2.39 -0.02 2.30 16 31 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.41 12.38 8.14 -92.71 -0.75 11.62 16 33 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 36 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.10 3.02 8.11 -2.39 -0.02 3.00 16 38 H 0.09 2.44 8.05 -2.39 -0.02 2.43 16 39 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 41 H 0.07 3.10 6.23 -2.39 -0.01 3.09 16 Total: -1.00 -66.22 338.28 0.21 -66.01 By element: Atomic # 1 Polarization: 42.41 SS G_CDS: -0.29 Total: 42.11 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 3.93 Total: -7.29 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -3.59 Total: -116.03 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -1.74 Total: -30.53 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.90 Total: 45.72 kcal Total: -66.22 0.21 -66.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713874163.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.703 kcal (2) G-P(sol) polarization free energy of solvation -66.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds