Wall clock time and date at job start Tue Mar 31 2020 02:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00381 * 2 1 4 4 H 1.48500 * 109.47636 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46755 * 300.00467 * 3 2 1 6 6 H 1.48501 * 109.47174 * 60.00122 * 3 2 1 7 7 C 1.38816 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99928 * 196.91455 * 7 2 1 9 9 N 1.36933 * 120.00309 * 16.92009 * 7 2 1 10 10 C 1.47147 * 120.98361 * 26.21654 * 9 7 2 11 11 C 1.53297 * 108.38406 * 129.48367 * 10 9 7 12 12 O 1.42964 * 109.22357 * 52.30240 * 11 10 9 13 13 C 1.42953 * 114.16682 * 297.42194 * 12 11 10 14 14 H 1.09006 * 109.51434 * 302.60292 * 13 12 11 15 15 C 1.53002 * 109.51626 * 182.50451 * 13 12 11 16 16 N 1.46500 * 109.47042 * 65.09571 * 15 13 12 17 17 C 1.34772 * 120.00295 * 180.02562 * 16 15 13 18 18 O 1.21616 * 119.99725 * 0.02562 * 17 16 15 19 19 C 1.47098 * 120.00458 * 180.02562 * 17 16 15 20 20 C 1.32988 * 120.00236 * 180.02562 * 19 17 16 21 21 C 1.51579 * 135.78246 * 180.02562 * 20 19 17 22 22 C 1.53842 * 86.75611 * 205.15172 * 21 20 19 23 23 C 1.51883 * 135.78754 * 359.97438 * 20 19 17 24 24 C 1.47173 * 120.94067 * 206.20646 * 9 7 2 25 25 H 0.97002 * 119.99835 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.68291 * 9.75785 * 10 9 7 27 27 H 1.09003 * 109.71450 * 249.22203 * 10 9 7 28 28 H 1.09002 * 109.51210 * 292.37698 * 11 10 9 29 29 H 1.09007 * 109.55616 * 172.25254 * 11 10 9 30 30 H 1.09004 * 109.46836 * 305.10299 * 15 13 12 31 31 H 1.08997 * 109.47420 * 185.09988 * 15 13 12 32 32 H 0.97008 * 119.99747 * 0.02562 * 16 15 13 33 33 H 1.08000 * 119.99999 * 0.02562 * 19 17 16 34 34 H 1.08998 * 113.66792 * 90.68786 * 21 20 19 35 35 H 1.09001 * 113.66707 * 319.61237 * 21 20 19 36 36 H 1.09003 * 113.66155 * 89.68712 * 22 21 20 37 37 H 1.09000 * 113.65785 * 220.63526 * 22 21 20 38 38 H 1.09004 * 113.74942 * 40.41869 * 23 20 19 39 39 H 1.08992 * 113.66781 * 269.26237 * 23 20 19 40 40 H 1.08998 * 109.64871 * 110.77705 * 24 9 7 41 41 H 1.09003 * 109.72863 * 350.20931 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0552 -1.2226 0.2716 9 7 1.3700 -2.3623 -0.3462 10 6 0.1974 -2.3445 -1.2350 11 6 0.4244 -3.3658 -2.3554 12 8 0.7650 -4.6290 -1.7789 13 6 1.9812 -4.6206 -1.0278 14 1 2.8005 -4.2876 -1.6650 15 6 2.2745 -6.0317 -0.5142 16 7 2.5294 -6.9215 -1.6498 17 6 2.8116 -8.2220 -1.4368 18 8 2.8543 -8.6570 -0.3019 19 6 3.0681 -9.1153 -2.5770 20 6 3.3461 -10.3988 -2.3668 21 6 3.6589 -11.5993 -3.2377 22 6 3.1267 -12.4656 -2.0831 23 6 3.4888 -11.2967 -1.1502 24 6 1.8352 -3.6633 0.1607 25 1 -0.4850 0.8401 0.0004 26 1 0.0769 -1.3497 -1.6639 27 1 -0.6960 -2.6114 -0.6704 28 1 1.2377 -3.0273 -2.9973 29 1 -0.4864 -3.4686 -2.9454 30 1 1.4168 -6.3987 0.0495 31 1 3.1514 -6.0080 0.1328 32 1 2.4950 -6.5746 -2.5550 33 1 3.0306 -8.7290 -3.5848 34 1 4.7230 -11.7341 -3.4313 35 1 3.0521 -11.6542 -4.1415 36 1 2.0564 -12.6635 -2.1421 37 1 3.7149 -13.3657 -1.9045 38 1 2.7452 -11.1081 -0.3758 39 1 4.5053 -11.3469 -0.7602 40 1 1.1075 -4.0631 0.8667 41 1 2.7991 -3.5422 0.6551 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714465012.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:31 Heat of formation + Delta-G solvation = -40.362026 kcal Electronic energy + Delta-G solvation = -21577.683835 eV Core-core repulsion = 18265.577875 eV Total energy + Delta-G solvation = -3312.105960 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.93476 -40.08033 -39.05110 -36.50301 -35.72263 -33.41211 -32.62687 -31.51165 -29.21521 -27.23013 -26.69673 -25.04525 -24.26946 -23.15716 -21.86662 -21.25733 -19.32029 -18.83422 -17.95166 -17.54272 -17.17118 -16.82143 -16.39347 -16.19169 -15.77276 -15.63149 -15.53447 -15.14854 -14.98672 -14.61770 -14.43650 -13.71560 -13.32848 -13.23198 -13.03248 -12.87008 -12.72198 -12.58940 -12.51878 -12.18651 -12.06631 -11.88792 -11.86182 -11.52417 -11.33725 -10.83362 -10.73987 -10.55122 -10.31154 -9.91622 -8.77807 -7.92922 -5.40515 0.40616 1.45409 1.47130 1.58055 2.18101 2.33560 2.47507 2.76699 3.22209 3.43055 3.48619 3.58013 3.85371 3.96638 4.04703 4.18093 4.26616 4.30042 4.46718 4.51026 4.60125 4.63326 4.69973 4.75222 4.77234 4.87497 4.88708 4.97435 5.04107 5.06581 5.22514 5.27852 5.37658 5.42119 5.53755 5.59700 5.68419 6.24014 6.31418 6.62033 7.04360 7.27901 7.72124 8.25880 9.13414 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.047070 B = 0.002864 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.711891 B = 9774.388306 C = 9958.970003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.293 1.293 7 C -0.266 4.266 8 H 0.073 0.927 9 N -0.613 5.613 10 C 0.143 3.857 11 C 0.054 3.946 12 O -0.390 6.390 13 C 0.080 3.920 14 H 0.071 0.929 15 C 0.142 3.858 16 N -0.710 5.710 17 C 0.541 3.459 18 O -0.590 6.590 19 C -0.212 4.212 20 C -0.069 4.069 21 C -0.095 4.095 22 C -0.134 4.134 23 C -0.120 4.120 24 C 0.116 3.884 25 H 0.252 0.748 26 H 0.068 0.932 27 H -0.002 1.002 28 H 0.053 0.947 29 H 0.109 0.891 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.414 0.586 33 H 0.160 0.840 34 H 0.120 0.880 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.059 0.941 39 H 0.101 0.899 40 H 0.016 0.984 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.497 -20.561 -10.191 24.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.220 1.220 7 C -0.395 4.395 8 H 0.091 0.909 9 N -0.338 5.338 10 C 0.017 3.983 11 C -0.024 4.024 12 O -0.310 6.310 13 C 0.021 3.979 14 H 0.089 0.911 15 C 0.017 3.983 16 N -0.361 5.361 17 C 0.332 3.668 18 O -0.472 6.472 19 C -0.233 4.233 20 C -0.071 4.071 21 C -0.131 4.131 22 C -0.171 4.171 23 C -0.157 4.157 24 C -0.010 4.010 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.016 0.984 28 H 0.071 0.929 29 H 0.127 0.873 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.251 0.749 33 H 0.178 0.822 34 H 0.138 0.862 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.078 0.922 39 H 0.120 0.880 40 H 0.034 0.966 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.316 -20.861 -9.398 24.021 hybrid contribution -0.119 1.869 0.226 1.887 sum 7.197 -18.992 -9.172 22.285 Atomic orbital electron populations 1.70202 1.06774 1.26047 1.55223 1.25855 0.96125 1.01706 1.01000 0.85131 0.78600 0.79388 0.76844 1.18899 1.21339 1.22050 1.19592 0.93037 0.85521 1.41395 0.90924 1.44371 1.33673 1.01889 1.53861 1.21320 0.87879 0.98471 0.90641 1.23169 1.00818 0.83547 0.94834 1.87806 1.41822 1.32075 1.69248 1.22635 0.87421 0.94122 0.93740 0.91130 1.21141 1.01176 0.86945 0.89007 1.45735 1.70829 1.08783 1.10723 1.19021 0.75971 0.82233 0.89590 1.90744 1.54298 1.76375 1.25810 1.21718 1.10666 0.92370 0.98536 1.24148 0.89699 0.92753 1.00519 1.22448 1.03452 0.89712 0.97525 1.22834 1.02033 0.97076 0.95184 1.22498 1.02570 0.94662 0.95950 1.21608 0.98735 0.86322 0.94340 0.93904 0.91333 0.98410 0.92920 0.87284 0.92351 0.89602 0.74913 0.82207 0.86237 0.88638 0.89858 0.88690 0.92225 0.88049 0.96593 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.14 11.14 21.65 0.24 -54.90 16 2 C -0.05 -2.85 4.95 84.86 0.42 -2.43 16 3 Si 0.97 44.18 29.59 68.60 2.03 46.21 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 6 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 7 C -0.27 -14.49 9.65 84.04 0.81 -13.68 16 8 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 9 N -0.61 -31.00 3.05 -697.49 -2.13 -33.13 16 10 C 0.14 6.89 5.45 86.36 0.47 7.36 16 11 C 0.05 1.99 6.98 72.08 0.50 2.49 16 12 O -0.39 -14.10 10.33 -148.98 -1.54 -15.64 16 13 C 0.08 2.73 2.81 30.70 0.09 2.81 16 14 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 15 C 0.14 4.31 5.34 86.38 0.46 4.77 16 16 N -0.71 -18.49 5.50 -466.71 -2.57 -21.06 16 17 C 0.54 15.14 7.76 86.57 0.67 15.81 16 18 O -0.59 -20.96 15.11 -4.08 -0.06 -21.02 16 19 C -0.21 -4.31 10.03 23.43 0.23 -4.07 16 20 C -0.07 -1.27 6.88 -17.01 -0.12 -1.39 16 21 C -0.09 -1.00 8.05 30.41 0.24 -0.75 16 22 C -0.13 -1.60 8.10 31.12 0.25 -1.35 16 23 C -0.12 -2.27 7.07 30.52 0.22 -2.06 16 24 C 0.12 4.88 6.03 86.35 0.52 5.40 16 25 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 26 H 0.07 3.66 6.14 -2.39 -0.01 3.64 16 27 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 28 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.11 3.43 8.14 -2.38 -0.02 3.41 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.41 8.84 8.46 -92.70 -0.78 8.06 16 33 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 34 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.06 1.47 7.49 -2.38 -0.02 1.45 16 39 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.07 2.87 7.96 -2.39 -0.02 2.85 16 Total: -1.00 -70.05 337.15 0.99 -69.06 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.24 Total: 17.56 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 4.78 Total: 12.92 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -4.45 Total: -109.09 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -1.60 Total: -36.66 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -70.05 0.99 -69.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714465012.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.699 kcal (2) G-P(sol) polarization free energy of solvation -70.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds